mRNA_Ecto-sp13_S_contig11368.1200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11368.1200.1
Unique NamemRNA_Ecto-sp13_S_contig11368.1200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11368.1200.1 vs. uniprot
Match: D8LL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL55_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.430e-50
Identity = 115/132 (87.12%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:   94 VRPKGCITLKLLPKTAATAASVPASSPAFILSTATAVAALVASVRISSPPAAGTSPASSSFSGLTTAVAXXXXXSSAAFYFYARDRGEAAAAEGAAVKLVLPEPFFPQLPEENGKGLLDRYGGIESEYLERV 489
            VRPKG ITLKLLPKTAATAASVPASSPAFILS ATAVAALV+SVRISSP AA TSPASSSFSGL TAVAXXXXX     YFYARDRG AAA E AAVKLVLPEPFFPQLPEE GK LLDRYGGIESEYLE+V
Sbjct:  568 VRPKGRITLKLLPKTAATAASVPASSPAFILSAATAVAALVSSVRISSPTAADTSPASSSFSGLATAVAXXXXXXXXXXYFYARDRGAAAAEEDAAVKLVLPEPFFPQLPEEKGKELLDRYGGIESEYLEKV 699
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11368.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL55_ECTSI5.430e-5087.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11368contigEcto-sp13_S_contig11368:2881..4492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score188.7
Seed ortholog evalue2.5e-45
Seed eggNOG ortholog2880.D8LL55
Model size819
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EV1A@1,2SX3F@2759
Cds size579
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11368.1200.1prot_Ecto-sp13_S_contig11368.1200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11368 3046..4417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462594.750394-UTR-Ecto-sp13_S_contig11368:2880..30451681462594.750394-UTR-Ecto-sp13_S_contig11368:2880..3045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11368 2881..3045 -
1681462594.79858-UTR-Ecto-sp13_S_contig11368:4417..44921681462594.79858-UTR-Ecto-sp13_S_contig11368:4417..4492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11368 4418..4492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462594.7636878-CDS-Ecto-sp13_S_contig11368:3045..30811681462594.7636878-CDS-Ecto-sp13_S_contig11368:3045..3081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11368 3046..3081 -
1681462594.7731366-CDS-Ecto-sp13_S_contig11368:3325..34571681462594.7731366-CDS-Ecto-sp13_S_contig11368:3325..3457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11368 3326..3457 -
1681462594.781777-CDS-Ecto-sp13_S_contig11368:3639..40321681462594.781777-CDS-Ecto-sp13_S_contig11368:3639..4032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11368 3640..4032 -
1681462594.7898252-CDS-Ecto-sp13_S_contig11368:4399..44171681462594.7898252-CDS-Ecto-sp13_S_contig11368:4399..4417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11368 4400..4417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11368.1200.1

>prot_Ecto-sp13_S_contig11368.1200.1 ID=prot_Ecto-sp13_S_contig11368.1200.1|Name=mRNA_Ecto-sp13_S_contig11368.1200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MNNVFEVRPKGCITLKLLPKTAATAASVPASSPAFILSTATAVAALVASV
RISSPPAAGTSPASSSFSGLTTAVAATAVASSAAFYFYARDRGEAAAAEG
AAVKLVLPEPFFPQLPEENGKGLLDRYGGIESEYLERVLEAFKATPFKEH
FAKLLDKVFEPSPFGHGGETVLDHSVRKALQESRRATLPAGL*
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mRNA from alignment at Ecto-sp13_S_contig11368:2881..4492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11368.1200.1 ID=mRNA_Ecto-sp13_S_contig11368.1200.1|Name=mRNA_Ecto-sp13_S_contig11368.1200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11368:2881..4492- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCCATTTCCAAGCCAAGGCAGACTGGAGTGACGAGGGAGTACGCCCA
TCGATTGAAGTTTTTCACCTTCGTGATGAACAACGTTTTCGAGGTGTGTG
GCATACAAAGGTGGAATCCTCTTCTCAGCAAGGCAAGTCACGTGGTCATA
TGCAAACTACGTTCCGAAGCCTACTCACGCACTCCATCGGCACCACACAT
CACAGAACCTTAATTTTTTGGGAGGGGTGAGGAGAGAGGGGAAGGTGCCT
GGTGCGAAGAAGGAAGCGCGAGCGCGCCCTTAGAGCACAGAGAGGCGACA
ACGAGACCAAATCGCACCCGACCCCTACCTCCGGCAGGGGTTACCACCAA
TCGCACGTTGTTCCGTCAAACGAATATTGCATGGGCAACTACTACAACTG
TAACGATGTTTTTCTTGTTTTTGCAACTTTTTCGATTTTGGCGTGCTTTG
ATTGTGGCAGGTTCGTCCGAAGGGGTGCATAACGCTGAAGCTGCTCCCCA
AGACCGCGGCTACCGCAGCGTCGGTTCCGGCGTCGTCGCCGGCCTTCATC
CTCTCCACCGCCACCGCTGTCGCGGCTCTCGTCGCTTCAGTCCGCATCTC
CTCCCCGCCTGCCGCTGGTACGTCTCCAGCTTCCTCGTCCTTTTCAGGCC
TCACCACCGCTGTCGCTGCCACAGCTGTGGCCTCCTCGGCGGCTTTCTAT
TTCTACGCGCGTGATCGTGGCGAAGCTGCTGCAGCGGAGGGCGCTGCGGT
GAAGCTGGTCCTGCCCGAACCGTTCTTCCCTCAGCTCCCAGAAGAAAATG
GCAAGGGACTTCTGGACCGCTATGGCGGGATTGAATCGGAGTATTTGGAG
AGGGTACGAAACCCTGGGTGTTTGAAGTCCGTCTACAATACTCCTTTCTC
AAGAATGGTTGCCCCCCCCCGGCACTAACGACCAAGAATTCGCATTTGTA
TGTGCATGCCCGACCAGAGAAACGAACTGAATCGTTAACCTGAAGAGCTC
ATCAGCAAGTTTCTTCTCAACCAACCGTCTACAAGGTGCTGGAGGCCTTC
AAGGCTACCCCCTTCAAAGAGCATTTTGCGAAGCTCCTGGACAAGGTGTT
CGAGCCCTCCCCCTTCGGTCATGGCGGTGAAACTGTATTGGACCACAGCG
TCAGGAAAGCCTTGCAGGTATTTGAACGCCTTCCACAACAGTAGTACGCC
AGAGATCATTGCAGGCTCAAACGGTGCTTAGCTCAAGAGCTGATTGGGAC
TGGGTGAAAGGATGGTCAGCAATTGCCCCCGTTGGTGATTTCCAGGAGAG
CATGCGTTGTAGCGAACGACTGAAGATCTTGCAGGAAAACTAGCATGATA
GGCACAAGAGTGTCAAATACTGACGGTGCAAAATGACCGCCGGCCGGAAT
GGCTTTTACAGGAATCGCGCCGTGCTACGCTCCCGGCGGGTCTCTAGTTT
TGGCCCGACAAATGGAAAGATGCGAAATGACCAAGTGCTGGAAGGACTAG
ACACGAGTCACGCCATGTACCGCTCGTTGCGGGTGTCTATTTCTTGGCCC
ATCACACCACACGGGCCCGTTGTCGTCCGAAGAAAGCTATCCTTGCAACG
CACACTTGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11368:2881..4492-

>mRNA_Ecto-sp13_S_contig11368.1200.1 ID=mRNA_Ecto-sp13_S_contig11368.1200.1|Name=mRNA_Ecto-sp13_S_contig11368.1200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11368:2881..4492- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACGTTTTCGAGGTTCGTCCGAAGGGGTGCATAACGCTGAAGCT
GCTCCCCAAGACCGCGGCTACCGCAGCGTCGGTTCCGGCGTCGTCGCCGG
CCTTCATCCTCTCCACCGCCACCGCTGTCGCGGCTCTCGTCGCTTCAGTC
CGCATCTCCTCCCCGCCTGCCGCTGGTACGTCTCCAGCTTCCTCGTCCTT
TTCAGGCCTCACCACCGCTGTCGCTGCCACAGCTGTGGCCTCCTCGGCGG
CTTTCTATTTCTACGCGCGTGATCGTGGCGAAGCTGCTGCAGCGGAGGGC
GCTGCGGTGAAGCTGGTCCTGCCCGAACCGTTCTTCCCTCAGCTCCCAGA
AGAAAATGGCAAGGGACTTCTGGACCGCTATGGCGGGATTGAATCGGAGT
ATTTGGAGAGGGTGCTGGAGGCCTTCAAGGCTACCCCCTTCAAAGAGCAT
TTTGCGAAGCTCCTGGACAAGGTGTTCGAGCCCTCCCCCTTCGGTCATGG
CGGTGAAACTGTATTGGACCACAGCGTCAGGAAAGCCTTGCAGGAATCGC
GCCGTGCTACGCTCCCGGCGGGTCTCTAG
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