mRNA_Ecto-sp13_S_contig11364.1199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11364.1199.1
Unique NamemRNA_Ecto-sp13_S_contig11364.1199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11364.1199.1 vs. uniprot
Match: D7FV95_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV95_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.920e-113
Identity = 177/192 (92.19%), Postives = 181/192 (94.27%), Query Frame = 3 
Query:  318 PCNSVGVMSRAQIILAAKGRPVVLITPRMPYMPVETDGFETVYQLKQFNVQPVPTNPKKRIKNVRLTRLGQNQQTIYCELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDSKPQPAVVSFTAQNKIREVQQRVTLQEKRVVAKDHGVEDDDDFDWDTINDDLEEGEEPFVMPPTPTEDEINARLRDD 893
            P   V V    +IIL AKGRPVVLITPRMPYMPVETDGFETVYQLKQ+NVQPVPTNPKKRIKNVRLTRLGQNQQTIY ELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYD+KPQPAVVSFTAQNKIREVQQRVTLQEKRVVAKDHGVEDDDDFDWDTINDDLEEGEEPFV+PP PTEDEINARLRDD
Sbjct:  213 PRRLVDVTVLREIILVAKGRPVVLITPRMPYMPVETDGFETVYQLKQYNVQPVPTNPKKRIKNVRLTRLGQNQQTIYSELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDAKPQPAVVSFTAQNKIREVQQRVTLQEKRVVAKDHGVEDDDDFDWDTINDDLEEGEEPFVVPPMPTEDEINARLRDD 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11364.1199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV95_ECTSI1.920e-11392.19DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11364contigEcto-sp13_S_contig11364:1008..3901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1618
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000260.1
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462594.6801128-UTR-Ecto-sp13_S_contig11364:1007..17291681462594.6801128-UTR-Ecto-sp13_S_contig11364:1007..1729Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11364 1008..1729 -
1681462594.721986-UTR-Ecto-sp13_S_contig11364:3812..39011681462594.721986-UTR-Ecto-sp13_S_contig11364:3812..3901Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11364 3813..3901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462594.69037-CDS-Ecto-sp13_S_contig11364:1729..20141681462594.69037-CDS-Ecto-sp13_S_contig11364:1729..2014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11364 1730..2014 -
1681462594.7016315-CDS-Ecto-sp13_S_contig11364:2440..25601681462594.7016315-CDS-Ecto-sp13_S_contig11364:2440..2560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11364 2441..2560 -
1681462594.7127957-CDS-Ecto-sp13_S_contig11364:3410..38121681462594.7127957-CDS-Ecto-sp13_S_contig11364:3410..3812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11364 3411..3812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11364.1199.1prot_Ecto-sp13_S_contig11364.1199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11364 1730..3812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11364.1199.1

>prot_Ecto-sp13_S_contig11364.1199.1 ID=prot_Ecto-sp13_S_contig11364.1199.1|Name=mRNA_Ecto-sp13_S_contig11364.1199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MYMIFPGQKAHVGCEQTVHNRCRSEKHTHITPTCVVPWTKSRRPQRRCQP
LSLGQRPCSVPVCLLSSLRGVSSCMSPCNSVGVMSRAQIILAAKGRPVVL
ITPRMPYMPVETDGFETVYQLKQFNVQPVPTNPKKRIKNVRLTRLGQNQQ
TIYCELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDSKPQPAVVS
FTAQNKIREVQQRVTLQEKRVVAKDHGVEDDDDFDWDTINDDLEEGEEPF
VMPPTPTEDEINARLRDD*
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mRNA from alignment at Ecto-sp13_S_contig11364:1008..3901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11364.1199.1 ID=mRNA_Ecto-sp13_S_contig11364.1199.1|Name=mRNA_Ecto-sp13_S_contig11364.1199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11364:1008..3901- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCCTGGTGTACTTCAAACGACGGTGGTAAAGTGGCTCCTAGACTCGTC
GTCGTCATAGTTGGAGAGCAGGCAGTCCACAGCGTTGTTATGTACATGAT
ATTTCCTGGTCAAAAAGCACACGTCGGTTGTGAACAGACGGTGCACAACC
GGTGTCGGAGCGAGAAGCATACGCACATCACACCTACTTGTGTCGTGCCT
TGGACTAAATCTCGTAGACCACAAAGGCGGTGCCAACCGCTCTCGTTGGG
CCAACGGCCTTGCAGTGTGCCTGTCTGTCTGTTATCATCTTTGCGTGGTG
TTTCATCGTGCATGTCTCCATGCAACTCGGTTGGTGTCATGTCGCGCGCA
CAGATCATTCTTGCCGCCAAGGGCCGACCGGTGGTCCTCATAACACCCCG
GATGCCGTACATGCCGGTGGAGACGGACGGGTTCGAAACAGTCTATCAAC
TCAAGCAGTTCAACGTGCAACCCGTCCCGACGAACCCCAAGGTGAGGGCG
GGGGGTGTTGCTGTCGGTGATGTTTTTTATTGTGTCTTGTGGTGTCATTG
GGATAGCGCGGGAGCAACGATAACGCTTGCTGAATCGGTCACGAACATGA
GGCGTAGTTGCAGCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTGCTCT
CCCTTTACATCCAGCCCATCTTTTCCTTTTGTTACTCTTCTGCTATGATT
GAACCTGCTTATTTTTCAGCGCTTCTATATGAGCTCGGTCATGCTACGGT
GCCAGAGTAGTTCCGCCTGTAACTTTGCAGAACTCGCGCTAGGTTGTGAT
TTCGAGTCTCCCCAGAGTAAAACAACTCGCATTTGAACAGCGCATAGGCG
TGAGTTCACAGAACGAAGAGGCAAGGGATTGATGGACTCTTCTAGCGACA
ACAGTTGAAATTGGAGGCAATCACCGTTGGAAGAACTGTAGAGAAAAGCA
CCCCCCTCCTCACATGTACAATACGGGCTGGAGAGTCAAATACAGAACCA
AATGTACTGGACCTAAAGCAGGTGCTCAGAATCGATTGGACGAGAATAGG
AAAGAAATCCTGTCTTGAGGCACCCGACCGTCCTTTTGTGTACATTGGAA
TACATGGCGTTACCGAAGGGTGCATGCCTCTGTTCCTCAGGGTTGCTTTC
AAATGCTGCCCAGACAAAGCACCATAGTGCGCGGAATTAAGGTGTGTATG
CGACACGGCGGCATCAGCTTCCGTGTCGATGATGCCGTAACAGGAGACCC
ATCCTTTTTGGCATCCCACCGCCTGTACATCCACGACCAACATGTTGGTA
CGATACGGGCGTCCGTCCTCTCCTCTCATGCCGTCGCGTAGAAAAGGATC
AAGAACGTTCGGCTGACACGGCTGGGGCAGAACCAGCAGACAATTTATTG
CGAGCTCGGGCAGGTGATTCCACGGGTTCTTGTAACCAGGGCCTTCCCCG
GCGACTTCAAGGTAATGTCGTGTCATGTGATGCAAACGTAATTTGGAGTG
GCTGGGCGTACAATGCAGCCATCAAGGCAGCGTCGACCGGACCTGCAACA
TCCTGTGCCATATGGACAACGTACTAAGCTTCTAGGGGTTTTGTCTTGTC
ACATCAGATGAAACGACAATGCAGGACTATCATGTACGCGAGCCGACTTA
TTTCTGCCATCCGCTCCTTCATGCTGCACAAGCGTGAACGCCCTTGCCTT
TTAGCGGTGCGTATTCTTTGGATTTTGGGTATGAAAGCTTGCTGTGTATG
CCTTGATACCGGAGCAGTCTCGTCATGTTCTGCCTTTGGTTATCGGTGCC
GCCGGCCTCCCTTGTAAAACGTATATCAAGAAGTGTAACTCTACCGATTG
TCGCATTTCCCTCCTGATGTTTGTGGGTGTTGGTCAGTTGTATCTCGACA
TTGATGGGAAAGGGTTTCAGCTGGAAAAAACGTACGACTCGAAGCCCCAA
CCCGCCGTCGTGAGCTTCACGGCACAGAACAAGATCAGAGAAGTGCAACA
ACGAGTTACCCTCCAGGAGAAGCGGGTTGTCGCAAAGGATCATGGCGTCG
AGGACGACGATGACTTTGACTGGGACACAATCAATGACGATCTCGAGGAG
GGCGAGGAGCCTTTCGTCATGCCCCCGACGCCTACCGAGGACGAGATCAA
TGCGAGGCTACGCGATGATTGAATGCGCTACGCGATGGCTGAGATACCGG
GAAAGGAGTAATGGCTCAACGGCGGCGAGTGGGGTGTACCTAAGAGATGC
AAAGATTGTGGCTGGAAGGAAGCGGTCATAGCATTGAGTTTCCATTAGAA
ATATTGCACGTATTAGAAGAGGTCGTTTCGCTTGGCCATTTCGAGGGGAG
ATATGGAAAATGGTGCATAGGCCATCCGGTTTTTGTTGGCGTAAAAAGGG
AGAGCCGTCGTTTGTACAGAAAACAGGTTTATGGAGTGGTACTTGGCAGA
AATGGGTTTTATTTTACGGTCGTGCTCAACAATCGAACTTGCCTAAGGTT
CGTTAGCTTGATGGTGGGAAATGGTATTGGAGAGCGGGTGGTTGTCGGTA
GTACGCATGCATGGAGAACGAGGTTGTGGGGTTTGTGCAAGGGTCTACTT
CTGGATTGTGAGTGTTCCTTTACTCAAAAACATTGGCAATGTCCATGACA
GCGCCACGATGTCACAGAGAGAAGCCATGTCCTTACTTACAATCCTGCGA
CCAAGGTGACAGACATGGATGAGTGGGTGTAGGCAAGAAGCCCCAAAATC
ACCTCATGCGGTTCTTTCGGTCGCCTCAGTGTATCTAATTGCCTGTGGCG
AGTCGAACACTAAACGAAAGACGTGGTGAACACCTTTCCGGGGAGGAACT
GCTAATCCCTCCTTGTGGAATTAATAGAAGACGCGCGCAGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11364:1008..3901-

>mRNA_Ecto-sp13_S_contig11364.1199.1 ID=mRNA_Ecto-sp13_S_contig11364.1199.1|Name=mRNA_Ecto-sp13_S_contig11364.1199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11364:1008..3901- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACATGATATTTCCTGGTCAAAAAGCACACGTCGGTTGTGAACAGAC
GGTGCACAACCGGTGTCGGAGCGAGAAGCATACGCACATCACACCTACTT
GTGTCGTGCCTTGGACTAAATCTCGTAGACCACAAAGGCGGTGCCAACCG
CTCTCGTTGGGCCAACGGCCTTGCAGTGTGCCTGTCTGTCTGTTATCATC
TTTGCGTGGTGTTTCATCGTGCATGTCTCCATGCAACTCGGTTGGTGTCA
TGTCGCGCGCACAGATCATTCTTGCCGCCAAGGGCCGACCGGTGGTCCTC
ATAACACCCCGGATGCCGTACATGCCGGTGGAGACGGACGGGTTCGAAAC
AGTCTATCAACTCAAGCAGTTCAACGTGCAACCCGTCCCGACGAACCCCA
AGAAAAGGATCAAGAACGTTCGGCTGACACGGCTGGGGCAGAACCAGCAG
ACAATTTATTGCGAGCTCGGGCAGGTGATTCCACGGGTTCTTGTAACCAG
GGCCTTCCCCGGCGACTTCAAGTTGTATCTCGACATTGATGGGAAAGGGT
TTCAGCTGGAAAAAACGTACGACTCGAAGCCCCAACCCGCCGTCGTGAGC
TTCACGGCACAGAACAAGATCAGAGAAGTGCAACAACGAGTTACCCTCCA
GGAGAAGCGGGTTGTCGCAAAGGATCATGGCGTCGAGGACGACGATGACT
TTGACTGGGACACAATCAATGACGATCTCGAGGAGGGCGAGGAGCCTTTC
GTCATGCCCCCGACGCCTACCGAGGACGAGATCAATGCGAGGCTACGCGA
TGATTGA
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