mRNA_Ecto-sp13_S_contig11342.1187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: D7FHZ0_ECTSI (Phosphorylated adapter RNA export protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ0_ECTSI) HSP 1 Score: 580 bits (1494), Expect = 3.060e-206 Identity = 342/380 (90.00%), Postives = 351/380 (92.37%), Query Frame = 1
Query: 1 MSTFADDDMDFGGDDDGDDFLTGKLAALGIDEDLELSGGEXXXXNPASATDPAADSSNKPPGVVAPSPQQAPASRA-AAVPAASQSTAPVPADDWGAPRSEGCSSGDAGVWGEVDSLGETRKEAATAKAPPAAGGGRGTAVVEDGELVQMIDQPLRASRGREQRSARDNGRGGGXXXXXXXXXRGKRGRPKKDGKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPARLKELYADELRVKKEKERARRAANKRKAEAALAGEDVMTPRNPPRSRGXXXXXXXXXXXXXATRAGRDMGKWTGPTAGAGGKDGCGDAVAAKRARAGISSFSKE 1137
MSTF DDDMDFGGDDDGDDFLTGKLAALGIDEDLELSGGE N A ATDPAADSSNKPPG+VAPSPQQA AS A AAVPAAS+STAP PADDWGAP SEGCS GDAG+WGEVDS GETR T +APPAAGGGRGTAV EDGELVQMIDQPLR SRGREQRSARD+GRGGGXXXXXXXX RGKRGRPKKDGKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEP+RLKELYADELRVKKEK+RARRAANKRKAEAALAGEDVMTPRNPPR+R XXXXXXXXXATRAGRDMGKW GPTAGAGG+DGCGDAVAAKRARAGISS SKE
Sbjct: 1 MSTFDDDDMDFGGDDDGDDFLTGKLAALGIDEDLELSGGEEEDDNRAPATDPAADSSNKPPGIVAPSPQQASASTAVAAVPAASRSTAPAPADDWGAPPSEGCSPGDAGIWGEVDSWGETRIATPTVEAPPAAGGGRGTAV-EDGELVQMIDQPLRTSRGREQRSARDSGRGGGXXXXXXXX-RGKRGRPKKDGKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPSRLKELYADELRVKKEKDRARRAANKRKAEAALAGEDVMTPRNPPRNR-----XXXXXXXXXATRAGRDMGKWAGPTAGAGGRDGCGDAVAAKRARAGISSLSKE 373
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A835ZKK4_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKK4_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 9.430e-20 Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 601 TIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPARLKELYADELRVKKEKERARRAANK 900
T+K+ A +CE+L EPKYYLMCQVV +G+NKT LL+ + + GG+ TADG R+R+ GGVF TLL+ + P ++K +YA++ RV+K + R RA K
Sbjct: 165 TVKDAAIRLCEQLDEPKYYLMCQVVWHLGFNKTNRLLKQTVQIERDGGLRTADGKRRRSPGGVFLTLLRDAVTPEKMKAIYAEDKRVQKLRARTVRAMRK 264
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A8J2X059_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X059_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 6.010e-11 Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 577 GKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPARLKELY-ADELRVKKEKERARRAANKRKAEAALAGEDV 936
G RG + A+ L E L+ + + IG + LL+ V ETQ GG+ TADGSRKRT GGVFF LL+ M P K+L AD R K+E E R+ KR E G D
Sbjct: 75 GAKRGSTKREEGVAKSARRALDEQNIRLLREAIIAIGAKAAKRLLKRVVETQRDGGLATADGSRKRTPGGVFFHLLRDEMTPEAYKQLMKADSKRKKRELEERRKQREKRAREGGTPGGDA 195
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A7D9EF16_PARCT (Phosphorylated adapter RNA export protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EF16_PARCT) HSP 1 Score: 72.0 bits (175), Expect = 2.070e-10 Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 625 VCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKK--HMEPARLKELYADELRVKKEKERARRAA-NKRK 906
+ ERL E K+ L+ + V IG K DL ++ Q GGM T +GSR+RT+GGVF TLLK + ++KE++ D+L +KKE + ++AA N+RK
Sbjct: 166 IAERLEEHKFSLIIETVKIIGGKKALDLFNETKQVQLNGGMKTCNGSRRRTSGGVFLTLLKSSNYATDEQIKEIFKDDLSIKKEALKRKKAAYNQRK 262
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A8J5D9L3_9CHEL (Phosphorylated adapter RNA export protein n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5D9L3_9CHEL) HSP 1 Score: 70.5 bits (171), Expect = 8.750e-10 Identity = 31/87 (35.63%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 625 VCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLK--KHMEPARLKELYADELRVKKEKER 879
+C+ L EPK++L+ V++ +G K +LL+ +E +E GG+ T +G R+RT GG++FTLLK K++ +++ +++ E + K K++
Sbjct: 214 ICKTLNEPKHHLIQSVINVVGETKAMELLKMTEEVEENGGLMTQNGKRRRTPGGIYFTLLKSDKNISKKQMRSIFSTEKEIFKNKQK 300
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: UPI001069D661 (uncharacterized protein LOC114518314 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069D661) HSP 1 Score: 68.6 bits (166), Expect = 3.420e-9 Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 625 VCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKK--HMEPARLKELYADELRVKKE 870
+ ERL E K+ L+ + V IG K +L + + Q +GGM T +GSR+RT+GGVFFTLLK + ++KE++ ++L +KKE
Sbjct: 146 IAERLEEHKFALIIETVKVIGGKKVLELFKETKRIQLSGGMKTCNGSRRRTSGGVFFTLLKSSNYATDEQIKEIFKEDLTMKKE 229
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A293N1Q8_ORNER (Phosphorylated adapter RNA export protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293N1Q8_ORNER) HSP 1 Score: 65.9 bits (159), Expect = 1.540e-8 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 616 AEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLK 807
A+ + ERL EPK +L+ +VV +G + R LL ++ + GG+ T DGSR+RTAGGVFF LLK
Sbjct: 131 AQEIAERLQEPKKHLLERVVRILGEARARQLLSMTEDVESAGGLLTIDGSRRRTAGGVFFHLLK 194
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A0N8CKZ4_9CRUS (Phosphorylated adapter RNA export protein n=5 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8CKZ4_9CRUS) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 601 TIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHME--PARLKELYADELRVKKEKERARRAANKRKAEA 915
T+ E A+ + +L E K L+ +VV IG T L QET+ GG+ ADGSR+RT GGVF LL+ H E +++E+++ E + K++ +R RA +R+A+A
Sbjct: 225 TVLEVAQDITVKLHEEKMDLILRVVEIIGKELTIQLFRETQETENDGGIMVADGSRRRTPGGVFLYLLRNHEEIPMEKIREVFSQETKAKEQHKRTIRA-KRRQAQA 330
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A5B8MI43_9CHLO (Phosphorylated adapter RNA export protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MI43_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 2.390e-8 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 625 VCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPARLKELYADELRVKKEKERARRAANKRKAEAALAG 927
VC++L EPK +LM +V+ +G +L++ V+ +E GG ADG+R+RT GGVF LLK + + ++ DE KE ++ R+A +R A AG
Sbjct: 151 VCQKLNEPKQHLMRKVMEQVGKIFIMELVDQVERVEEEGGQFVADGTRRRTKGGVFLNLLKAQVTKEQWDTIFEDE----KEAQKRRKAMKRRLRYAGEAG 247
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Match: A0A293M5C7_ORNER (Phosphorylated adapter RNA export protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M5C7_ORNER) HSP 1 Score: 65.9 bits (159), Expect = 3.020e-8 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 616 AEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLK 807
A+ + ERL EPK +L+ +VV +G + R LL ++ + GG+ T DGSR+RTAGGVFF LLK
Sbjct: 220 AQEIAERLQEPKKHLLERVVRILGEARARQLLSMTEDVESAGGLLTIDGSRRRTAGGVFFHLLK 283 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11342.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11342.1187.1 >prot_Ecto-sp13_S_contig11342.1187.1 ID=prot_Ecto-sp13_S_contig11342.1187.1|Name=mRNA_Ecto-sp13_S_contig11342.1187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp MSTFADDDMDFGGDDDGDDFLTGKLAALGIDEDLELSGGEEEDDNPASATback to top mRNA from alignment at Ecto-sp13_S_contig11342:695..2690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11342.1187.1 ID=mRNA_Ecto-sp13_S_contig11342.1187.1|Name=mRNA_Ecto-sp13_S_contig11342.1187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11342:695..2690- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11342:695..2690- >mRNA_Ecto-sp13_S_contig11342.1187.1 ID=mRNA_Ecto-sp13_S_contig11342.1187.1|Name=mRNA_Ecto-sp13_S_contig11342.1187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11342:695..2690- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |