mRNA_Ecto-sp13_S_contig11328.1180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11328.1180.1
Unique NamemRNA_Ecto-sp13_S_contig11328.1180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11328.1180.1 vs. uniprot
Match: D7G409_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G409_ECTSI)

HSP 1 Score: 784 bits (2025), Expect = 5.890e-284
Identity = 435/472 (92.16%), Postives = 441/472 (93.43%), Query Frame = 1 
Query:    1 MDSPRSPASGTPITAWQTPWSQTIHHDEPAPPRSTNSSRQHH-QPSLPSQGRRGNGSFQREXXXXXXXXXXXXXXQHRQASLELLEARSLNRVLEQESVLDKEEIAALCQEQEEVLQANSALQAELEEARASLTEVCREVERLSAALTKQASLLTSEKNRRRDAETELGRCKSALVAAADRCSDPSSGSSRSVDNPGATSVEDNASSMGSTDGSHSTGSSVERPVLARASAVVDGAGPIDDDPEPDLPDLFHSVQSAMTGTVSRWIKGMQAACSPGLRQALVLPWLLHKLFFLSTEVIDERRQELVSIFEEG-AVGGSESTKESSVTLHDHLNRHYPTAFPLQGEKLKAAIKTVMMSLAHSMIESEEWNPEAKNADAVQSALAASGLEKIVEEYLNIAVGCLLRSYSFTDDLGDVERFDPNRHFDPVDGEVTGELCVVIFPALVGGDGVEGEGEEEAGLLLGRRFVMNYQGK 1410
            MDSPRSPA  TPITAWQTPWSQT HHDEPAPPRSTN+S +H  QPSLPSQGRRGNGSFQRE       XXXXXXX HRQASLELLEARSLNRVLEQESVLDKEEIAAL QEQEEVLQANSALQAELEEARASLTEVCREVERLSAALTKQASLLTSEKNRRRDAETELGRCKSALVAAADRCSDPSSGSS SVDNPGA SVEDNASSMGSTDGSHSTGSSVERPVLA ASA+VDGAGPIDDDPEPDLPDLFHSVQSAMTGTVSRWIKGMQAACSPGLRQALVLPWLLHKLFFLSTE+IDERRQELVSIFEE  AVGG+E  KESSVTLH HLNRHY T FPLQG+KL AA KTVMMSLAHSMIESEEWNPEAKNADAVQSALAASGLEKIVEEYLNIAVGCLLRSYSFTDDLGDVERFDPNRHFDPVDGEVTGELCVVIFPALVGGDG EGEGEEE G LL RRFVMNYQGK
Sbjct:    1 MDSPRSPAE-TPITAWQTPWSQTNHHDEPAPPRSTNNSTRHQDQPSLPSQGRRGNGSFQRERERERGQXXXXXXXXHRQASLELLEARSLNRVLEQESVLDKEEIAALYQEQEEVLQANSALQAELEEARASLTEVCREVERLSAALTKQASLLTSEKNRRRDAETELGRCKSALVAAADRCSDPSSGSSTSVDNPGAASVEDNASSMGSTDGSHSTGSSVERPVLASASAIVDGAGPIDDDPEPDLPDLFHSVQSAMTGTVSRWIKGMQAACSPGLRQALVLPWLLHKLFFLSTELIDERRQELVSIFEEEVAVGGNEGAKESSVTLHHHLNRHYRTVFPLQGDKLMAATKTVMMSLAHSMIESEEWNPEAKNADAVQSALAASGLEKIVEEYLNIAVGCLLRSYSFTDDLGDVERFDPNRHFDPVDGEVTGELCVVIFPALVGGDGGEGEGEEEEGRLLRRRFVMNYQGK 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11328.1180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G409_ECTSI5.890e-28492.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11328contigEcto-sp13_S_contig11328:698..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1413
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_000540.1
Cds size1413
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462593.015432-CDS-Ecto-sp13_S_contig11328:697..10341681462593.015432-CDS-Ecto-sp13_S_contig11328:697..1034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11328 698..1034 -
1681462593.024169-CDS-Ecto-sp13_S_contig11328:2799..38751681462593.024169-CDS-Ecto-sp13_S_contig11328:2799..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11328 2800..3875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11328.1180.1prot_Ecto-sp13_S_contig11328.1180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11328 698..3875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11328.1180.1

>prot_Ecto-sp13_S_contig11328.1180.1 ID=prot_Ecto-sp13_S_contig11328.1180.1|Name=mRNA_Ecto-sp13_S_contig11328.1180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=471bp
MDSPRSPASGTPITAWQTPWSQTIHHDEPAPPRSTNSSRQHHQPSLPSQG
RRGNGSFQRERERERGQRRQHQHRQHRQASLELLEARSLNRVLEQESVLD
KEEIAALCQEQEEVLQANSALQAELEEARASLTEVCREVERLSAALTKQA
SLLTSEKNRRRDAETELGRCKSALVAAADRCSDPSSGSSRSVDNPGATSV
EDNASSMGSTDGSHSTGSSVERPVLARASAVVDGAGPIDDDPEPDLPDLF
HSVQSAMTGTVSRWIKGMQAACSPGLRQALVLPWLLHKLFFLSTEVIDER
RQELVSIFEEGAVGGSESTKESSVTLHDHLNRHYPTAFPLQGEKLKAAIK
TVMMSLAHSMIESEEWNPEAKNADAVQSALAASGLEKIVEEYLNIAVGCL
LRSYSFTDDLGDVERFDPNRHFDPVDGEVTGELCVVIFPALVGGDGVEGE
GEEEAGLLLGRRFVMNYQGK*
back to top

mRNA from alignment at Ecto-sp13_S_contig11328:698..3875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11328.1180.1 ID=mRNA_Ecto-sp13_S_contig11328.1180.1|Name=mRNA_Ecto-sp13_S_contig11328.1180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3178bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11328:698..3875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTCCCCGATCGCCGGCGTCGGGCACTCCCATCACTGCCTGGCA
AACCCCGTGGTCACAAACCATTCATCATGATGAACCTGCCCCGCCGAGAA
GCACCAACAGCAGCAGGCAGCACCACCAGCCGTCCCTTCCCAGCCAGGGT
AGACGGGGCAATGGTTCCTTCCAGCGGGAGCGGGAGCGGGAGCGTGGGCA
GCGGCGGCAGCACCAGCACCGGCAGCACCGCCAGGCGTCGCTGGAGCTCT
TGGAGGCTCGTTCCCTGAACAGGGTGCTGGAGCAGGAGAGCGTGCTGGAC
AAGGAGGAGATCGCCGCGCTCTGCCAAGAGCAGGAGGAAGTGCTGCAAGC
GAACAGCGCCCTGCAGGCGGAGCTCGAGGAAGCGAGGGCCTCCCTGACGG
AAGTCTGCCGCGAGGTGGAGCGTCTGTCGGCGGCCCTCACCAAGCAGGCC
TCTCTCCTGACCAGCGAGAAGAATAGGCGGCGTGACGCGGAGACGGAATT
AGGGCGGTGCAAGTCCGCTCTGGTGGCCGCGGCAGATCGGTGCAGCGATC
CGTCAAGCGGCAGCAGCAGGAGTGTCGACAACCCCGGTGCTACCTCCGTC
GAGGACAACGCGAGCAGCATGGGCAGCACCGACGGAAGCCACAGCACCGG
TAGCAGCGTCGAGCGTCCTGTCTTGGCTCGCGCGTCTGCTGTCGTCGATG
GTGCTGGACCAATCGACGACGATCCAGAACCCGATCTCCCCGATCTGTTC
CACTCTGTTCAGAGCGCCATGACGGGCACCGTCAGCAGGTGGATCAAGGG
CATGCAGGCCGCCTGCAGCCCGGGGCTGCGGCAAGCTCTGGTTCTGCCAT
GGCTGCTGCACAAGCTTTTCTTCCTGAGCACGGAGGTCATCGACGAGAGG
CGGCAGGAGCTCGTGAGCATCTTCGAGGAAGGGGCGGTCGGCGGCAGCGA
GAGTACAAAGGAGTCGTCCGTGACCCTGCATGACCATTTGAACCGCCACT
ACCCCACCGCGTTTCCTCTGCAGGGGGAGAAGTTAAAGGCGGCCATCAAG
ACGGTCATGATGTCGCTCGCTCACAGGTAAGGCAGGCATCTGCATGATGT
AGACACAAACTACTGCTGCGGGTTTTGCCGATGGCTATCACTTGCTGCGC
ATGTACTTCGTTAATCGTTCGCTCTCTCGTCTTTCCGTCTGTCGTCATTC
GAGCATTCGACACTTCTTATATATATAGCGTACAGCAGTAGCACCTCAGT
AATTGCAATGCCTTCTGATAATGCGTTGACTATCTTTGGTACCCGTTGCC
CGCGCGCGAAACACCGGGTGTCTCAAGGCTGTTTGTTTGTGCCACGTGCC
CTATCGGCATCCTCATGCTGAACGTCTTGCGACATGTGCGCGTTCGCTAG
ACACAAGACACAGCTGCACTGCGTTGTCCTCCGCCATTAGATTTTTTACT
TTGCATTTATTTAGACCGCCTGAACTCCAGGGCCATCGGAACGACATTCT
TGGCACCCGTCGGACATTACACCAAATCACAGCAGCCTGGGTGTTGCTTG
TCCTCTGTGCTACACAGGTTCTCACCGCTGCAAGTACACCCGTGGCGGAA
AAATTAGCAGATATTTACATCTATCTGCTTCTGTTAGCCCACTCGGTAGA
GCAGCGGTGAAGCTTGATTTTTCGAGATTTTCGTGCCGAAGCCGGAGCGG
CACCAACGGATTTCACCTCGGGCATATGCGTCATGTGTACACCGTGGCAC
CAATCATACATATGTGTCATCATTACGTACCCCCTCGCTCGATGGTTGGA
TCCTCCCGGTGGACGTACGGCTGTGTTGCGTTTTGTTTTGTATGCATCCT
CTCCCGGAACTGTAGGGAACCATCAAATTCGTCCGCTCTTGGATTTCTAA
GCGATTGCAACAGCAGTGCCGCCTTACGGCTGGTGTGTTCGCTTGTGGAC
GAGGTTCCAGCGCAGGAGGTCCAGCTCTTATGTCGCCACGCCTTCTGCAG
AAATAGCTATTTGTTGGATGGCGAGTGCGGACGGTTTTTTGTAGGCTCGT
GGTTTCTCTTTCAGCTTGGCACATCCCCATCCCCCCTCCTCCCTTGTGCA
CGCACAGAGATCATCCATTAACGGTGCGCGACACCCAACGTCGACGAGAT
TTCGCCGTGATATGCGCAACTGCTGTGTCTCGCACTCGTTTCCTCCACAC
ATGATTTCCCTTTGCGTGACGTGAGCAATCATCCATCCGAAAGAGCGGCA
CGTGGGCCGAAGCAAAAGCGGTGGCCACCATCTCTCCTTTCCATTTCATG
ACGGCATTTATTTCAGATTTTAGTACAGCAGTGTAGTTTGTTTTCTTCGC
GGTCCAACATCTGATAACCAAACACACGTGCCCTTTTGAAACATCCAAAA
CCACCCGCGCCAATACTAGCTTCTCGTTCTTTTGTTTTTTGTTGTCGTCC
TCTTCGGTCAACCACCGTCCTTGTCCTTGCCGCCGAGCAACACACTACCC
CATGCCAACAGGGTCTCCCGCACTACTCTGTACGTTCCCTTGAGGAAGGC
ATGGTTGCGAGATTGTCGTCTTCTGTTTCTTGCGTTGTTGAGGCATTACA
GGAGGACCAGTACTTCTCCTAGCGCGCACTCTCCTAGAAATTCGACACAC
GTTCATTTTTTTGTAGATTCCTCGAAGCGTTCCCCACTGTGTGCTCGCAA
GTTCTAGTTCCACATTCACCAATGGTCGAACCACGGTTTGGCATCGCATA
CACGTCAATACACGCCACATGCTTGCTTTCTCCCTAGTCCATGCCTCACG
TTACCCCATCCCGGCCCCTTCAACTGGACGACCGACGACAGCATGATCGA
GTCTGAAGAGTGGAACCCGGAGGCCAAGAACGCGGACGCCGTCCAATCCG
CCCTCGCGGCGAGCGGCCTCGAGAAGATCGTTGAGGAGTACCTCAATATC
GCCGTCGGCTGCCTGCTGCGGTCGTACTCGTTCACCGACGACCTCGGAGA
TGTGGAGCGTTTCGACCCGAACCGGCACTTCGATCCCGTCGACGGTGAAG
TCACCGGCGAGTTGTGCGTCGTCATCTTCCCGGCGTTGGTAGGCGGTGAC
GGCGTGGAAGGAGAAGGGGAGGAGGAGGCAGGGCTCTTGCTGGGGAGGCG
GTTCGTGATGAACTACCAGGGCAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11328:698..3875-

>mRNA_Ecto-sp13_S_contig11328.1180.1 ID=mRNA_Ecto-sp13_S_contig11328.1180.1|Name=mRNA_Ecto-sp13_S_contig11328.1180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11328:698..3875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTCCCCGATCGCCGGCGTCGGGCACTCCCATCACTGCCTGGCA
AACCCCGTGGTCACAAACCATTCATCATGATGAACCTGCCCCGCCGAGAA
GCACCAACAGCAGCAGGCAGCACCACCAGCCGTCCCTTCCCAGCCAGGGT
AGACGGGGCAATGGTTCCTTCCAGCGGGAGCGGGAGCGGGAGCGTGGGCA
GCGGCGGCAGCACCAGCACCGGCAGCACCGCCAGGCGTCGCTGGAGCTCT
TGGAGGCTCGTTCCCTGAACAGGGTGCTGGAGCAGGAGAGCGTGCTGGAC
AAGGAGGAGATCGCCGCGCTCTGCCAAGAGCAGGAGGAAGTGCTGCAAGC
GAACAGCGCCCTGCAGGCGGAGCTCGAGGAAGCGAGGGCCTCCCTGACGG
AAGTCTGCCGCGAGGTGGAGCGTCTGTCGGCGGCCCTCACCAAGCAGGCC
TCTCTCCTGACCAGCGAGAAGAATAGGCGGCGTGACGCGGAGACGGAATT
AGGGCGGTGCAAGTCCGCTCTGGTGGCCGCGGCAGATCGGTGCAGCGATC
CGTCAAGCGGCAGCAGCAGGAGTGTCGACAACCCCGGTGCTACCTCCGTC
GAGGACAACGCGAGCAGCATGGGCAGCACCGACGGAAGCCACAGCACCGG
TAGCAGCGTCGAGCGTCCTGTCTTGGCTCGCGCGTCTGCTGTCGTCGATG
GTGCTGGACCAATCGACGACGATCCAGAACCCGATCTCCCCGATCTGTTC
CACTCTGTTCAGAGCGCCATGACGGGCACCGTCAGCAGGTGGATCAAGGG
CATGCAGGCCGCCTGCAGCCCGGGGCTGCGGCAAGCTCTGGTTCTGCCAT
GGCTGCTGCACAAGCTTTTCTTCCTGAGCACGGAGGTCATCGACGAGAGG
CGGCAGGAGCTCGTGAGCATCTTCGAGGAAGGGGCGGTCGGCGGCAGCGA
GAGTACAAAGGAGTCGTCCGTGACCCTGCATGACCATTTGAACCGCCACT
ACCCCACCGCGTTTCCTCTGCAGGGGGAGAAGTTAAAGGCGGCCATCAAG
ACGGTCATGATGTCGCTCGCTCACAGCATGATCGAGTCTGAAGAGTGGAA
CCCGGAGGCCAAGAACGCGGACGCCGTCCAATCCGCCCTCGCGGCGAGCG
GCCTCGAGAAGATCGTTGAGGAGTACCTCAATATCGCCGTCGGCTGCCTG
CTGCGGTCGTACTCGTTCACCGACGACCTCGGAGATGTGGAGCGTTTCGA
CCCGAACCGGCACTTCGATCCCGTCGACGGTGAAGTCACCGGCGAGTTGT
GCGTCGTCATCTTCCCGGCGTTGGTAGGCGGTGACGGCGTGGAAGGAGAA
GGGGAGGAGGAGGCAGGGCTCTTGCTGGGGAGGCGGTTCGTGATGAACTA
CCAGGGCAAGTGA
back to top