mRNA_Ecto-sp13_S_contig11320.1176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11320.1176.1
Unique NamemRNA_Ecto-sp13_S_contig11320.1176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11320.1176.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.170e-10
Identity = 87/113 (76.99%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    4 RARVEGLAQVQAQMVSASPVIAEPLAQQASVPVCPSPTTGTSDAAIDNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHAVLPTGVKEGGDVG 342
            RA+VEGLAQ   Q+VSASPV AEPLAQQASVPV                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAH  LP GVKEGGDVG
Sbjct:  989 RAKVEGLAQ--GQVVSASPVTAEPLAQQASVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHVALPIGVKEGGDVG 1099
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11320.1176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV56_9PHAE3.170e-1076.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11320contigEcto-sp13_S_contig11320:1972..3171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size651
Hectar predicted targeting categoryother localisation
Exons2
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462592.6001105-CDS-Ecto-sp13_S_contig11320:1971..20581681462592.6001105-CDS-Ecto-sp13_S_contig11320:1971..2058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11320 1972..2058 +
1681462592.6101816-CDS-Ecto-sp13_S_contig11320:2608..31691681462592.6101816-CDS-Ecto-sp13_S_contig11320:2608..3169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11320 2609..3169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11320.1176.1prot_Ecto-sp13_S_contig11320.1176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11320 1972..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11320.1176.1

>prot_Ecto-sp13_S_contig11320.1176.1 ID=prot_Ecto-sp13_S_contig11320.1176.1|Name=mRNA_Ecto-sp13_S_contig11320.1176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
QRARVEGLAQVQAQMVSASPVIAEPLAQQASVPVCPSPTTGTSDAAIDNG
EVMTGRVGSASGGTKAGTSGKGGNGRSRASGSRSRGGRKGEARHDERQAH
AVLPTGVKEGGDVGGGGSRGGLVATPPPAQQQQAHEPSKKGGRGQQQRRQ
REQQQQQQQQQPPPKGRSSAKPQQPSSTTTAATTTPAKAKKKAPALVVET
PVSGAWADEIPSPTPQ
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mRNA from alignment at Ecto-sp13_S_contig11320:1972..3171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11320.1176.1 ID=mRNA_Ecto-sp13_S_contig11320.1176.1|Name=mRNA_Ecto-sp13_S_contig11320.1176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11320:1972..3171+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGAGCGAGAGTAGAGGGCTTGGCTCAGGTTCAGGCTCAGATGGTGTC
GGCGTCGCCCGTGATAGCAGAGCCGTTGGCACAGCAGGTGAGGTACTGTG
GTACTGCAGCCGGTAAAGAAGAGTGAGTACAGTAGGCGGTAAAGAAGAAT
GATGGTTTCAATAGTTTCAATCGTTTCGAAGGTGTGAGAAACGCAGCATG
CGGCAACGTGTCCTTGGCGGCCGTACGGTAGTCAACGTTCCGCCCATCAC
CTCCTTCAGGGTTTTTATCATTGCGTGTTTGGTTTGGCACCTTTGTGTAC
GACACCGCAGTCTTCTGTGCAAATTAAGCTGTTCGCTGGACATGAGTGTT
CGCGGGGGTCTGGAATGGGCCGTTGCAGACAGGTTTCCGCCAACAAGAGA
TAGAGGTGCAATATTCTTTTCTGCCGGTGGTACATGAACAAACGTCTCCG
GGGTCCCCCCCCCCCCACCCCCCGGCCCATATGTTGCAGACTTCTCTTCT
GAGAGCATATGATAGTACCCTCCGGCTACCCCTGTATTTGAAGCAGTGCA
TAGTCAACGGCCAATTTGCTCAAGAGAATCAATTCTCGTCAACCGTCGTT
GTTTTTACGTTTGCATGTGTTACCTGTGTCGCGTCAGGCGTCTGTCCCGG
TTTGCCCTTCCCCTACGACGGGAACGAGCGATGCCGCCATCGACAACGGA
GAGGTAATGACCGGGCGCGTCGGATCAGCGTCAGGGGGTACGAAGGCTGG
TACCAGCGGGAAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTT
CACGCGGAGGGCGGAAGGGGGAGGCTAGACACGACGAGAGGCAAGCACAC
GCGGTGCTGCCGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGG
AAGTCGCGGTGGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGG
CCCACGAGCCTTCAAAAAAAGGGGGGAGGGGTCAGCAACAGCGGCGCCAA
CGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCCGCCGAAAGGTAG
ATCGAGCGCCAAGCCTCAGCAGCCGTCGTCTACGACAACAGCAGCAACAA
CAACCCCCGCGAAAGCAAAAAAGAAAGCCCCGGCTCTTGTGGTCGAGACC
CCGGTGTCCGGAGCCTGGGCGGACGAGATACCTTCACCCACACCGCAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11320:1972..3171+

>mRNA_Ecto-sp13_S_contig11320.1176.1 ID=mRNA_Ecto-sp13_S_contig11320.1176.1|Name=mRNA_Ecto-sp13_S_contig11320.1176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11320:1972..3171+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGAGCGAGAGTAGAGGGCTTGGCTCAGGTTCAGGCTCAGATGGTGTC
GGCGTCGCCCGTGATAGCAGAGCCGTTGGCACAGCAGGCGTCTGTCCCGG
TTTGCCCTTCCCCTACGACGGGAACGAGCGATGCCGCCATCGACAACGGA
GAGGTAATGACCGGGCGCGTCGGATCAGCGTCAGGGGGTACGAAGGCTGG
TACCAGCGGGAAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTT
CACGCGGAGGGCGGAAGGGGGAGGCTAGACACGACGAGAGGCAAGCACAC
GCGGTGCTGCCGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGG
AAGTCGCGGTGGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGG
CCCACGAGCCTTCAAAAAAAGGGGGGAGGGGTCAGCAACAGCGGCGCCAA
CGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCCGCCGAAAGGTAG
ATCGAGCGCCAAGCCTCAGCAGCCGTCGTCTACGACAACAGCAGCAACAA
CAACCCCCGCGAAAGCAAAAAAGAAAGCCCCGGCTCTTGTGGTCGAGACC
CCGGTGTCCGGAGCCTGGGCGGACGAGATACCTTCACCCACACCGCAA
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