mRNA_Ecto-sp13_S_contig11320.1175.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11320.1175.1
Unique NamemRNA_Ecto-sp13_S_contig11320.1175.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11320.1175.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 513 bits (1321), Expect = 7.830e-168
Identity = 394/458 (86.03%), Postives = 397/458 (86.68%), Query Frame = 1 
Query:    1 DMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGGGSTSKAEADGAAKGTTPREAPPXXXXXXXXXXXXASSFQPPAAEARGGEELSGYQQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLGLPMSGQVGPLRPPAASPAVGIDVTPPPARSSP--GHRGGDSQAPAEDLGLGSPTTGQLGRQASQMEEGILPPVAANHPSHLQQASPQQQQHQVDQAAFPKRERRPRPQSSSRDPAPSAGGILPPSSTGNHVTSQQPRHRHSELGSPPLRHLQQQQLLRSPFPQQPTPPLTPVQMGXXXXXXXXXXXXXXXXXXPGPNVPGPSRGSPNLTYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSYRPPMHPSPSHAPRSHIGGXXXXXXV-GGAPWSEAPPVMPPYPAAAGVPSSHQPGMVNGAMRRN 1365
            DMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSG GS+SKAEADGAAKGTTPREAPPXXXXXXXXXXXX SSFQPPAAEARGGEELSGYQ +                 XXXXXXXXXXXKLGLPMSGQVGPL PPAA P VGIDVTPPPARSSP  GHRGG SQ PAEDLGLGSPTTGQLGRQASQMEEGILPPVAAN PSHLQQASPQQQ HQVDQAAFPKRERRPRPQSSSR P PSAGGI PPS TGNH TSQQPRHRHSELGSPPLRH QQQQLLRSPFPQQPTPPLTPVQMG            XXXXXXPGPN+PGPSRGS NLTYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXX  XXXXXXXXXXXXXXX SYRPPMHPSPSHAPRSHIGGXXXXXX  GG PWSEAP  MPPYPAAAGVPSSHQ GMVNGAMR N
Sbjct:  335 DMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGCGSSSKAEADGAAKGTTPREAPPXXXXXXXXXXXXVSSFQPPAAEARGGEELSGYQLQQQRPPKSPATSARSPIKXXXXXXXXXXXKLGLPMSGQVGPLGPPAAPPVVGIDVTPPPARSSPSLGHRGGGSQRPAEDLGLGSPTTGQLGRQASQMEEGILPPVAANQPSHLQQASPQQQ-HQVDQAAFPKRERRPRPQSSSRGPGPSAGGIPPPS-TGNHATSQQPRHRHSELGSPPLRH-QQQQLLRSPFPQQPTPPLTPVQMGMVHGLGLSAAAPXXXXXXPGPNLPGPSRGSSNLTYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHXXXXXHQXXXXXXXXXXXXXXX-SYRPPMHPSPSHAPRSHIGGXXXXXXXXGGPPWSEAPLAMPPYPAAAGVPSSHQTGMVNGAMRHN 788
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BLAST of mRNA_Ecto-sp13_S_contig11320.1175.1 vs. uniprot
Match: D7G7T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 7.410e-31
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 DMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGGGSTSKAEADGAAKGTTPREAPPXXXXXXXXXXXXASSFQPPAAEARGGEELSGYQ 270
            DMVSTLRSQIIAGPAA AEGDSAAFNFFGEPSSGGGS+SKAEADGAAKGTTPREAPPXXXXXXXXXXX  SSFQPPAA ARGGEELSGYQ
Sbjct:  378 DMVSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGGGSSSKAEADGAAKGTTPREAPPXXXXXXXXXXXNVSSFQPPAASARGGEELSGYQ 467
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11320.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV56_9PHAE7.830e-16886.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7T6_ECTSI7.410e-3194.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11320contigEcto-sp13_S_contig11320:1..1398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score132.5
Seed ortholog evalue5.1e-28
Seed eggNOG ortholog2880.D7G7T6
Model size1398
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CXH2@1,2RXF1@2759
Cds size1395
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462592.6449218-UTR-Ecto-sp13_S_contig11320:0..31681462592.6449218-UTR-Ecto-sp13_S_contig11320:0..3Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11320 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462592.6577277-CDS-Ecto-sp13_S_contig11320:3..13981681462592.6577277-CDS-Ecto-sp13_S_contig11320:3..1398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11320 4..1398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11320.1175.1prot_Ecto-sp13_S_contig11320.1175.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11320 4..1398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11320.1175.1

>prot_Ecto-sp13_S_contig11320.1175.1 ID=prot_Ecto-sp13_S_contig11320.1175.1|Name=mRNA_Ecto-sp13_S_contig11320.1175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=465bp
MVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGGGSTSKAEADGAAKGTT
PREAPPPPAPQPSNGNGNASSFQPPAAEARGGEELSGYQQKQQRPPKSPA
TSARSPIKQQQQQQQQQQQKLGLPMSGQVGPLRPPAASPAVGIDVTPPPA
RSSPGHRGGDSQAPAEDLGLGSPTTGQLGRQASQMEEGILPPVAANHPSH
LQQASPQQQQHQVDQAAFPKRERRPRPQSSSRDPAPSAGGILPPSSTGNH
VTSQQPRHRHSELGSPPLRHLQQQQLLRSPFPQQPTPPLTPVQMGMGHGL
GLSAAAPVPSPSPPGPNVPGPSRGSPNLTYGNNGGGWGGYAQQPPPPLQQ
RPQGAPPTQQQHHHQQQHHQHHRHQHPPHHHQHHQQQQQHSYRPPMHPSP
SHAPRSHIGGGGGGGGVGGAPWSEAPPVMPPYPAAAGVPSSHQPGMVNGA
MRRNTKNSGAAAGAA
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mRNA from alignment at Ecto-sp13_S_contig11320:1..1398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11320.1175.1 ID=mRNA_Ecto-sp13_S_contig11320.1175.1|Name=mRNA_Ecto-sp13_S_contig11320.1175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11320:1..1398+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATGGTCTCCACCTTGAGAAGCCAGATCATCGCCGGCCCCGCCGCCAC
CGCAGAGGGGGACTCCGCAGCATTCAACTTTTTCGGGGAGCCGAGTTCCG
GCGGCGGGAGTACCTCGAAGGCGGAGGCCGACGGCGCGGCGAAGGGGACG
ACGCCTCGAGAAGCCCCACCGCCGCCGGCACCGCAGCCTTCAAATGGCAA
CGGGAACGCTTCCTCGTTCCAGCCTCCGGCGGCGGAGGCTCGAGGGGGAG
AGGAGCTCTCAGGATACCAGCAGAAGCAGCAGCGGCCGCCAAAGTCGCCG
GCAACTTCCGCCCGCAGCCCGATCAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGAAACTGGGGCTCCCGATGTCTGGGCAAGTGGGGCCGCTTA
GGCCACCGGCCGCTTCCCCCGCCGTGGGCATAGACGTGACGCCCCCCCCC
GCACGCTCATCACCCGGACACCGCGGCGGCGACTCACAAGCACCCGCTGA
AGATTTGGGCTTGGGGTCGCCCACCACGGGGCAGCTAGGACGGCAGGCTT
CGCAGATGGAGGAAGGTATCTTGCCACCCGTTGCGGCGAACCACCCTTCC
CACCTCCAGCAGGCGAGTCCGCAGCAGCAACAACACCAGGTGGATCAGGC
CGCGTTCCCCAAGCGGGAGAGGCGCCCGAGGCCCCAGTCTTCGTCAAGGG
ACCCCGCGCCGTCAGCGGGGGGTATCCTCCCACCCTCCTCCACCGGAAAC
CACGTAACCTCTCAACAGCCTCGCCATCGACACTCGGAGCTGGGCTCTCC
ACCCCTGCGCCACCTCCAACAACAGCAATTGCTACGGTCTCCGTTCCCAC
AGCAGCCCACGCCGCCTTTGACCCCGGTGCAGATGGGGATGGGTCACGGG
TTGGGCCTGTCGGCGGCAGCGCCGGTGCCGTCGCCGAGCCCTCCGGGCCC
GAACGTCCCCGGGCCGTCCCGGGGATCGCCAAACCTGACGTATGGCAACA
ATGGCGGCGGCTGGGGGGGATACGCGCAGCAGCCGCCACCGCCGCTGCAA
CAACGGCCGCAGGGGGCCCCGCCAACGCAGCAGCAGCACCACCACCAGCA
GCAGCACCACCAACATCACCGTCACCAGCACCCACCCCACCACCACCAGC
ACCACCAGCAACAGCAGCAACACTCGTACCGGCCCCCGATGCACCCATCC
CCATCGCACGCCCCTCGGTCTCACATCGGAGGAGGAGGAGGAGGAGGAGG
AGTGGGAGGGGCGCCGTGGTCTGAAGCCCCCCCTGTGATGCCGCCGTACC
CGGCAGCAGCCGGTGTCCCGAGTTCCCATCAGCCCGGCATGGTCAACGGC
GCAATGCGTCGTAACACCAAAAACAGCGGCGCCGCCGCCGGTGCGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11320:1..1398+

>mRNA_Ecto-sp13_S_contig11320.1175.1 ID=mRNA_Ecto-sp13_S_contig11320.1175.1|Name=mRNA_Ecto-sp13_S_contig11320.1175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11320:1..1398+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTCCACCTTGAGAAGCCAGATCATCGCCGGCCCCGCCGCCACCGC
AGAGGGGGACTCCGCAGCATTCAACTTTTTCGGGGAGCCGAGTTCCGGCG
GCGGGAGTACCTCGAAGGCGGAGGCCGACGGCGCGGCGAAGGGGACGACG
CCTCGAGAAGCCCCACCGCCGCCGGCACCGCAGCCTTCAAATGGCAACGG
GAACGCTTCCTCGTTCCAGCCTCCGGCGGCGGAGGCTCGAGGGGGAGAGG
AGCTCTCAGGATACCAGCAGAAGCAGCAGCGGCCGCCAAAGTCGCCGGCA
ACTTCCGCCCGCAGCCCGATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAAACTGGGGCTCCCGATGTCTGGGCAAGTGGGGCCGCTTAGGC
CACCGGCCGCTTCCCCCGCCGTGGGCATAGACGTGACGCCCCCCCCCGCA
CGCTCATCACCCGGACACCGCGGCGGCGACTCACAAGCACCCGCTGAAGA
TTTGGGCTTGGGGTCGCCCACCACGGGGCAGCTAGGACGGCAGGCTTCGC
AGATGGAGGAAGGTATCTTGCCACCCGTTGCGGCGAACCACCCTTCCCAC
CTCCAGCAGGCGAGTCCGCAGCAGCAACAACACCAGGTGGATCAGGCCGC
GTTCCCCAAGCGGGAGAGGCGCCCGAGGCCCCAGTCTTCGTCAAGGGACC
CCGCGCCGTCAGCGGGGGGTATCCTCCCACCCTCCTCCACCGGAAACCAC
GTAACCTCTCAACAGCCTCGCCATCGACACTCGGAGCTGGGCTCTCCACC
CCTGCGCCACCTCCAACAACAGCAATTGCTACGGTCTCCGTTCCCACAGC
AGCCCACGCCGCCTTTGACCCCGGTGCAGATGGGGATGGGTCACGGGTTG
GGCCTGTCGGCGGCAGCGCCGGTGCCGTCGCCGAGCCCTCCGGGCCCGAA
CGTCCCCGGGCCGTCCCGGGGATCGCCAAACCTGACGTATGGCAACAATG
GCGGCGGCTGGGGGGGATACGCGCAGCAGCCGCCACCGCCGCTGCAACAA
CGGCCGCAGGGGGCCCCGCCAACGCAGCAGCAGCACCACCACCAGCAGCA
GCACCACCAACATCACCGTCACCAGCACCCACCCCACCACCACCAGCACC
ACCAGCAACAGCAGCAACACTCGTACCGGCCCCCGATGCACCCATCCCCA
TCGCACGCCCCTCGGTCTCACATCGGAGGAGGAGGAGGAGGAGGAGGAGT
GGGAGGGGCGCCGTGGTCTGAAGCCCCCCCTGTGATGCCGCCGTACCCGG
CAGCAGCCGGTGTCCCGAGTTCCCATCAGCCCGGCATGGTCAACGGCGCA
ATGCGTCGTAACACCAAAAACAGCGGCGCCGCCGCCGGTGCGGCT
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