mRNA_Ecto-sp13_S_contig11314.1169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11314.1169.1
Unique NamemRNA_Ecto-sp13_S_contig11314.1169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.950e-40
Identity = 77/93 (82.80%), Postives = 78/93 (83.87%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPL SHARDIVPLPPVD +   TTEA        SLEGTPPVG LVAGAKTLDQ R
Sbjct:  100 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLSSHARDIVPLPPVDEDAE-TTEAXXXXXXXXSLEGTPPVGPLVAGAKTLDQAR 191
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.660e-29
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            RFRTE+ GDVV RFNERFML+L DC +CL CDDELNVLPL S  R +  LP   G    T E  EL ELK SLEGTPP+G LV+GAKTLDQ R
Sbjct:  172 RFRTEAHGDVVARFNERFMLSLADCGACLACDDELNVLPLSSRMRRVEALPAAAGAEP-TQEQAELAELKASLEGTPPIGPLVSGAKTLDQAR 263
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A9SM91_PHYPA (RNA cytidine acetyltransferase n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A9SM91_PHYPA)

HSP 1 Score: 118 bits (296), Expect = 4.940e-29
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            RFRTES GDVVGRFNERF+L+L  CKSCLV DDELN LPL SH + I PLP ++GE   +   K+L+ELK+SL  T P GLLV   +TLDQ +
Sbjct:  169 RFRTESHGDVVGRFNERFILSLAACKSCLVMDDELNPLPLSSHTKSITPLPNLEGEEMLSEADKDLKELKDSLRDTQPAGLLVQKCRTLDQAK 261
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: UPI00052892DA (N-acetyltransferase 10-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI00052892DA)

HSP 1 Score: 112 bits (280), Expect = 8.110e-29
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQV 278
            R+RTE+  DVVGRFNERF+L+L  CK+C+V DD+LN+LP+ SH  +I P+PP   E     +  EL+ELK+SL+ T PVG+LV G KTLDQV
Sbjct:  134 RYRTEAHQDVVGRFNERFILSLASCKNCIVIDDQLNILPISSHVANITPVPPQSQEDSLRPQDLELKELKDSLQDTQPVGVLVDGCKTLDQV 225
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: UPI0005152A54 (N-acetyltransferase 10-like n=1 Tax=Phalacrocorax carbo TaxID=9209 RepID=UPI0005152A54)

HSP 1 Score: 112 bits (280), Expect = 3.170e-28
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+C+V DD+LN+LP+ SH  +I P+PP   E     +  EL+ELKESL+ T PVG+LV G KTLDQ +
Sbjct:  134 RYRTEAHQDVVGRFNERFILSLASCKNCIVIDDQLNILPISSHVANITPVPPQSQEDNIRPQDLELKELKESLQDTQPVGVLVDGCKTLDQAK 226
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A0A7L1ZH33_LEILU (NAT10 acetyltransferase (Fragment) n=1 Tax=Leiothrix lutea TaxID=36275 RepID=A0A7L1ZH33_LEILU)

HSP 1 Score: 115 bits (288), Expect = 5.920e-28
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+CLV DD+LN+LP+ SHA +I P+PP   E     +  ELRELKESL+ T PVG+LV G KTLDQ +
Sbjct:  170 RYRTEAHQDVVGRFNERFILSLASCKTCLVIDDQLNILPISSHAANITPVPPQSQEEKLWPQDLELRELKESLQDTQPVGVLVDGCKTLDQAK 262
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A0A665U3G6_ECHNA (N-acetyltransferase 10 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665U3G6_ECHNA)

HSP 1 Score: 111 bits (277), Expect = 6.440e-28
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+C+V DD+LN+LP+ SH  +I P+PP   E   + + +ELR+LKESL+ T PVG LV   +TLDQVR
Sbjct:  172 RYRTEAHQDVVGRFNERFILSLASCKTCVVIDDQLNILPISSHMANIKPVPPKTQEDGLSPQEQELRDLKESLQDTQPVGALVDSCRTLDQVR 264
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: A0A7L3QJT7_9SYLV (NAT10 acetyltransferase (Fragment) n=1 Tax=Cettia cetti TaxID=68486 RepID=A0A7L3QJT7_9SYLV)

HSP 1 Score: 115 bits (287), Expect = 8.090e-28
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+CLV DD+LN+LP+ SHA +I P+PP   E     +  ELRELKESL+ T PVG+LV G +TLDQ +
Sbjct:  170 RYRTEAHQDVVGRFNERFILSLASCKTCLVIDDQLNILPISSHAANITPVPPQSQEESLRPQDLELRELKESLQDTQPVGVLVDGCRTLDQAK 262
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BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: UPI00051145D2 (N-acetyltransferase 10 n=1 Tax=Pelecanus crispus TaxID=36300 RepID=UPI00051145D2)

HSP 1 Score: 114 bits (284), Expect = 1.940e-27
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+C+V DD+LN+LP+ SH  +I PLPP   E     +  EL+ELKESL+ T PVG+LV G KTLDQ +
Sbjct:  128 RYRTEAHQDVVGRFNERFILSLASCKNCIVIDDQLNILPISSHVANITPLPPQSQEDSLRPQDLELKELKESLQDTQPVGVLVDGCKTLDQAK 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Match: UPI001CF97781 (RNA cytidine acetyltransferase n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF97781)

HSP 1 Score: 114 bits (284), Expect = 2.060e-27
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 3 
Query:    3 RFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLWSHARDIVPLPPVDGEFF*TTEAKELRELKESLEGTPPVGLLVAGAKTLDQVR 281
            R+RTE+  DVVGRFNERF+L+L  CK+C+V DD+LN+LP+ SH  +IVP+PP   E   +T   ELRELKESL+ T PVG+LV   KT+DQV+
Sbjct:  170 RYRTEAHQDVVGRFNERFILSLASCKNCIVLDDQLNILPISSHIANIVPIPPKSQEDGLSTRDIELRELKESLQDTQPVGVLVDCCKTVDQVK 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11314.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE7.950e-4082.80RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A0A835Z409_9STRA2.660e-2966.67RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
A9SM91_PHYPA4.940e-2962.37RNA cytidine acetyltransferase n=4 Tax=Physcomitri... [more]
UPI00052892DA8.110e-2957.61N-acetyltransferase 10-like n=2 Tax=Neognathae Tax... [more]
UPI0005152A543.170e-2856.99N-acetyltransferase 10-like n=1 Tax=Phalacrocorax ... [more]
A0A7L1ZH33_LEILU5.920e-2860.22NAT10 acetyltransferase (Fragment) n=1 Tax=Leiothr... [more]
A0A665U3G6_ECHNA6.440e-2856.99N-acetyltransferase 10 n=1 Tax=Echeneis naucrates ... [more]
A0A7L3QJT7_9SYLV8.090e-2859.14NAT10 acetyltransferase (Fragment) n=1 Tax=Cettia ... [more]
UPI00051145D21.940e-2758.06N-acetyltransferase 10 n=1 Tax=Pelecanus crispus T... [more]
UPI001CF977812.060e-2759.14RNA cytidine acetyltransferase n=1 Tax=Protopterus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11314contigEcto-sp13_S_contig11314:3857..4751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462592.0784838-UTR-Ecto-sp13_S_contig11314:3856..39271681462592.0784838-UTR-Ecto-sp13_S_contig11314:3856..3927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11314 3857..3927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462592.0890644-CDS-Ecto-sp13_S_contig11314:3927..39601681462592.0890644-CDS-Ecto-sp13_S_contig11314:3927..3960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11314 3928..3960 -
1681462592.098635-CDS-Ecto-sp13_S_contig11314:4574..47511681462592.098635-CDS-Ecto-sp13_S_contig11314:4574..4751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11314 4575..4751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11314.1169.1prot_Ecto-sp13_S_contig11314.1169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11314 3928..4751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11314.1169.1

>prot_Ecto-sp13_S_contig11314.1169.1 ID=prot_Ecto-sp13_S_contig11314.1169.1|Name=mRNA_Ecto-sp13_S_contig11314.1169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
LDSAQRAPETWSAGSTSASCSRWAIARAASCAMTSLTCSPFGPTRETSCL
FHPSTVSFFRLRRRRSCGS*
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mRNA from alignment at Ecto-sp13_S_contig11314:3857..4751-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11314.1169.1 ID=mRNA_Ecto-sp13_S_contig11314.1169.1|Name=mRNA_Ecto-sp13_S_contig11314.1169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11314:3857..4751- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGATTCCGCACAGAGAGCTCCGGAGACGTGGTCGGCCGGTTCAACGAG
CGCTTCATGCTCACGCTGGGCGATTGCAAGAGCTGCCTCGTGTGCGATGA
CGAGCTTAACGTGCTCCCCCTTTGGTCCCACGCGAGAGACATCGTGCCTC
TTCCACCCGTCGACGGTGAGTTTTTTTGTACCCGCGCCTTCGACGGAAAT
CTTCTTGCGGTTTTTACCCGTTTTTCTGTCTCTGCGGCCGTCGTTCGCAT
TTGTGTTGAGATTTCCACCCGTTTTTTGTCTCTGCCCTTCTATGGGAAAC
CTTCTTGCGGCTATGACCCGTTCGTGTCTCTGCCCTTCCACGTATTTCTT
GTGGTTTTGACTCGTCTCTCCTTCCCCTCATTGGATATTCGGACGCGAAA
GGAAGCGGTGTCTGAATCAGTGTCGATGCTATATTTTGTAGTCACCCCGT
GACCTAAACAGCATTCGGTGCACACAGTAGGTTTGCTTTGCTGCCTCAAC
GCTCTCGTTTCTGGGCTTTGACATGTTAATGAACCGCGTACCCTTCCGTA
CGTGTGTGTTGTTACTGTTCCCGTTTGGGTCGTGCTTCATTCAATGTAAG
TCGTCATTATCACCTCACGGCTGCAAGTCATCACCGTCTTTTCCGACGCC
TTGGTGCCGCGTGCTGTGCCGCTTACTTGGCCATCTGACGCCCCGTGCTT
TTACGAACGTTCGTGTCACCGTCTTGGTCTGGCTGTCGTTGATGGTGCTG
TTGCCGCTACTGCTGTCGTTGTTGTTGTTCAGAGGACGCAGAGACTACGG
AGGCGAAGGAGCTGCGGGAGCTGAAAGAGTCGCTGGAGGGAACGCCTCCC
GTGGGTCTCCTAGTGGCCGGCGCCAAGACGTTGGACCAGGTACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11314:3857..4751-

>mRNA_Ecto-sp13_S_contig11314.1169.1 ID=mRNA_Ecto-sp13_S_contig11314.1169.1|Name=mRNA_Ecto-sp13_S_contig11314.1169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11314:3857..4751- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGATTCCGCACAGAGAGCTCCGGAGACGTGGTCGGCCGGTTCAACGAG
CGCTTCATGCTCACGCTGGGCGATTGCAAGAGCTGCCTCGTGTGCGATGA
CGAGCTTAACGTGCTCCCCCTTTGGTCCCACGCGAGAGACATCGTGCCTC
TTCCACCCGTCGACGGTGAGTTTTTTTAGACTACGGAGGCGAAGGAGCTG
CGGGAGCTGA
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