mRNA_Ecto-sp13_S_contig1130.1156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1130.1156.1
Unique NamemRNA_Ecto-sp13_S_contig1130.1156.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1130.1156.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.330e-35
Identity = 105/125 (84.00%), Postives = 107/125 (85.60%), Query Frame = 3 
Query:    3 GTGRTARASTPKAAXXXXXXXXXXXXXXXXXAASSGTQRRGRSPRKPDHQQEISRSQSQRRLHRRSVSVDDPDHRPTQRLPRGQQHPRANRSGGAPAGRRPXXXXXXXXXXXXRQPQNGRRVQQL 377
            GTGRTARASTP+ AXXXXXXXXXXXXXXXXX  +SGTQRRGRSP KP HQQEISRSQSQRRLHRRSVSVDDPDHRPTQRLPRG QHPR  RS GAPAGR P    XXXXX   RQPQN RRVQQL
Sbjct:  109 GTGRTARASTPRTAXXXXXXXXXXXXXXXXX--TSGTQRRGRSPPKPHHQQEISRSQSQRRLHRRSVSVDDPDHRPTQRLPRGHQHPRTTRSRGAPAGRAPAASNXXXXXSGGRQPQNSRRVQQL 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1130.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGU1_9PHAE1.330e-3584.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1130contigEcto-sp13_S_contig1130:3816..4194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size379
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462590.9988525-CDS-Ecto-sp13_S_contig1130:3815..41931681462590.9988525-CDS-Ecto-sp13_S_contig1130:3815..4193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 3816..4193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1130.1156.1prot_Ecto-sp13_S_contig1130.1156.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1130 3816..4193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1130.1156.1

>prot_Ecto-sp13_S_contig1130.1156.1 ID=prot_Ecto-sp13_S_contig1130.1156.1|Name=mRNA_Ecto-sp13_S_contig1130.1156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
PGPGGRRGRARQKPRQRQRPPRQRPLPLLPETPLLLEPREGDAPHESLIT
SKKFPGLNLSADSTAALSPWTTLTTVPRSGYHGGSSTRGRTEAEALPPAG
GLLPAITTRAAAAGGSLKTVDASSSS
back to top

mRNA from alignment at Ecto-sp13_S_contig1130:3816..4194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1130.1156.1 ID=mRNA_Ecto-sp13_S_contig1130.1156.1|Name=mRNA_Ecto-sp13_S_contig1130.1156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:3816..4194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGGACCGGGAGGACGGCGCGGGCGAGCACGCCAAAAGCCGCGGCAGCG
GCAGCGGCCGCCGCGGCAGCGGCCGCTGCCGCTGCTACCGGAGACGCCGC
TTCTTCTGGAACCCAGAGAAGGGGACGCTCCCCACGAAAGCCTGATCACC
AGCAAGAAATTTCCAGGTCTCAATCTCAGCGCAGACTCCACCGCCGCTCT
GTCTCCGTGGACGACCCTGACCACCGTCCCACGCAGCGGTTACCACGGGG
GCAGCAGCACCCGAGGGCGAACAGAAGCGGAGGCGCTCCCGCCGGCAGGA
GGCCTGCTGCCAGCAATAACAACTCGGGCGGCAGCGGCGGGAGGCAGCCT
CAAAACGGTCGACGCGTCCAGCAGCTCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1130:3816..4194+

>mRNA_Ecto-sp13_S_contig1130.1156.1 ID=mRNA_Ecto-sp13_S_contig1130.1156.1|Name=mRNA_Ecto-sp13_S_contig1130.1156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:3816..4194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGGACCGGGAGGACGGCGCGGGCGAGCACGCCAAAAGCCGCGGCAGCG
GCAGCGGCCGCCGCGGCAGCGGCCGCTGCCGCTGCTACCGGAGACGCCGC
TTCTTCTGGAACCCAGAGAAGGGGACGCTCCCCACGAAAGCCTGATCACC
AGCAAGAAATTTCCAGGTCTCAATCTCAGCGCAGACTCCACCGCCGCTCT
GTCTCCGTGGACGACCCTGACCACCGTCCCACGCAGCGGTTACCACGGGG
GCAGCAGCACCCGAGGGCGAACAGAAGCGGAGGCGCTCCCGCCGGCAGGA
GGCCTGCTGCCAGCAATAACAACTCGGGCGGCAGCGGCGGGAGGCAGCCT
CAAAACGGTCGACGCGTCCAGCAGCTCA
back to top