mRNA_Ecto-sp13_S_contig1130.1155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1130.1155.1
Unique NamemRNA_Ecto-sp13_S_contig1130.1155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1130.1155.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.940e-9
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = -2 
Query:    3 RARAWQASSPRAASPPSGSVSPLVVKEKEVPPTIEEIEA 119
            RARAWQ SS R ASPPSGSVSP V+KEKEVPPTIEEIEA
Sbjct:   21 RARAWQESSARDASPPSGSVSPPVMKEKEVPPTIEEIEA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1130.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGU1_9PHAE1.940e-987.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1130contigEcto-sp13_S_contig1130:3288..3672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_009840.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.0312788-CDS-Ecto-sp13_S_contig1130:3287..34031681462591.0312788-CDS-Ecto-sp13_S_contig1130:3287..3403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 3288..3403 -
1681462591.0400043-CDS-Ecto-sp13_S_contig1130:3554..36721681462591.0400043-CDS-Ecto-sp13_S_contig1130:3554..3672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 3555..3672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1130.1155.1prot_Ecto-sp13_S_contig1130.1155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1130 3288..3672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1130.1155.1

>prot_Ecto-sp13_S_contig1130.1155.1 ID=prot_Ecto-sp13_S_contig1130.1155.1|Name=mRNA_Ecto-sp13_S_contig1130.1155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MASISSIVGGTSFSFTTRGLTLPDGGEAARGELACQARARKGRVAGRSGV
PEPARVCAPRVCDCADKMGKSEEDPEK*
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mRNA from alignment at Ecto-sp13_S_contig1130:3288..3672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1130.1155.1 ID=mRNA_Ecto-sp13_S_contig1130.1155.1|Name=mRNA_Ecto-sp13_S_contig1130.1155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:3288..3672- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGATCTCTTCGATCGTGGGCGGCACCTCCTTCTCCTTCACCAC
CAGGGGGCTCACGCTGCCAGATGGCGGAGAAGCAGCGCGAGGCGAGCTCG
CCTGCCAGGCACGAGCTCGTTCGCGGACGCTTGACGTTCCCGAGTAAGGG
GCTGGCGTCGAGCTCGGCGGAGGTGGCATCTTTCCGCCGAATCTATCCTC
TCCTACACTGCTTTCTCGCACTCTCTCTCTCACTCGTCGAGCAGAAGGGT
GTGCAAGCTCTCCCGCAAGGGAAGGGGAGGGTGGCAGGAAGAAGCGGGGT
GCCTGAGCCAGCGAGGGTGTGCGCGCCGCGGGTGTGTGATTGTGCCGACA
AAATGGGGAAGTCGGAAGAGGACCCTGAAAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1130:3288..3672-

>mRNA_Ecto-sp13_S_contig1130.1155.1 ID=mRNA_Ecto-sp13_S_contig1130.1155.1|Name=mRNA_Ecto-sp13_S_contig1130.1155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:3288..3672- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGATCTCTTCGATCGTGGGCGGCACCTCCTTCTCCTTCACCAC
CAGGGGGCTCACGCTGCCAGATGGCGGAGAAGCAGCGCGAGGCGAGCTCG
CCTGCCAGGCACGAGCTCGGAAGGGGAGGGTGGCAGGAAGAAGCGGGGTG
CCTGAGCCAGCGAGGGTGTGCGCGCCGCGGGTGTGTGATTGTGCCGACAA
AATGGGGAAGTCGGAAGAGGACCCTGAAAAATGA
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