mRNA_Ecto-sp13_S_contig1129.1149.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1129.1149.1
Unique NamemRNA_Ecto-sp13_S_contig1129.1149.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A6H5KP68_9PHAE (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP68_9PHAE)

HSP 1 Score: 658 bits (1698), Expect = 6.770e-231
Identity = 335/337 (99.41%), Postives = 335/337 (99.41%), Query Frame = 1 
Query:    1 MSGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPFPTAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 1011
            MSGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFP PTAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACW DQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA
Sbjct:    1 MSGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPLPTAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACW-DQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 336
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A836CJJ9_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ9_9STRA)

HSP 1 Score: 478 bits (1231), Expect = 3.410e-160
Identity = 248/351 (70.66%), Postives = 291/351 (82.91%), Query Frame = 1 
Query:    1 MSGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPFPTAA----TGPDG-----QPAPE--DMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEED---RVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 1011
            MSGAWG  A ERA ++E+PLI EVH+DGLAVLKIIKHCTE+LP MVAGSLLGLDQ+  LEVTH+FP P+A     TG +G     +PA E  ++ GQDYQMEMMKMLREVNVDNNCVG+YQSMYLGSFCTQTL+DNQ++YQENLSDN+VV+LYDPVQTA GQLT+KAYRLSK FMR YRE+K++ IKPSEIL+ELPI+IRNPG++NAL++DLQ        +CDF+RLDLSTNPYLEKNLEFLC W+DDL+NEQ KF  YTR + +Q+     D AR   +RK+ NDERRAAG+E LP+ D A D++ DAPNRME LLIS QISAYCSQIN+F GSSFEKLFLAGSLQ+EA
Sbjct:    1 MSGAWGAPAPERAAMKELPLIKEVHMDGLAVLKIIKHCTEALPGMVAGSLLGLDQSATLEVTHSFPLPSAKKEADTGGEGGVGLARPADELSNLSGQDYQMEMMKMLREVNVDNNCVGWYQSMYLGSFCTQTLVDNQYTYQENLSDNAVVVLYDPVQTARGQLTLKAYRLSKEFMRAYRERKSDHIKPSEILDELPIRIRNPGLVNALVYDLQGRGGAGSAECDFERLDLSTNPYLEKNLEFLCGWVDDLANEQWKFQAYTRTLLKQRH----DAARWADRRKKANDERRAAGDEPLPD-DEAHDRRPDAPNRMESLLISTQISAYCSQINRFTGSSFEKLFLAGSLQREA 346
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A6V1NQH4_HETAK (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQH4_HETAK)

HSP 1 Score: 389 bits (999), Expect = 1.150e-125
Identity = 202/336 (60.12%), Postives = 257/336 (76.49%), Query Frame = 1 
Query:   10 AW-GTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPFPTAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDL-QEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEE-DSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            AW G  A E     +  L++EV IDGLAVL+++KHC ESLP MVAGSLLGLD+ G LE+TH+FP P+    P+G+ A E +DGQ++QMEMMKMLREVNVDNNCVG+YQSMYLGSF T TLI+NQFSYQ+NLSDNSVVILYDP+QT+NG LT+KA+RL++AFM   R   N  I+PSEILEELP++IRNPG++NAL++D+ Q     DC FDRLDL   PYLEKNLEFLC W+DDL+ E QKF Q+ R VA+Q+Q    ++ R L +R+ +N+ERR  GE  LPE  D    +    P R+E LLI+NQI+ YC+Q+N+F G+++ KL+LAGSL K+
Sbjct:    2 AWSGQGAAEALKNTKAKLVSEVCIDGLAVLQMVKHCNESLPVMVAGSLLGLDKEGTLEITHSFPCPSE--NPEGEGANEGIDGQEFQMEMMKMLREVNVDNNCVGWYQSMYLGSFYTNTLIENQFSYQDNLSDNSVVILYDPIQTSNGTLTLKAFRLTQAFMERNRRGDNGFIRPSEILEELPVRIRNPGLLNALVYDVTQGPGGADCTFDRLDLGGRPYLEKNLEFLCAWVDDLAAEHQKFQQHARAVAKQRQ----ERLRWLARRRHENEERRLDGEPPLPERPDPGMFRAQGGPPRLESLLIANQINTYCAQVNRFTGAAYSKLYLAGSLHKD 331
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A7S2RWA1_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWA1_9STRA)

HSP 1 Score: 326 bits (836), Expect = 1.890e-101
Identity = 182/338 (53.85%), Postives = 230/338 (68.05%), Query Frame = 1 
Query:   10 AWGTEAVERAPIEE---IPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPFPTAATGPDGQPAPEDMDGQD--YQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            AWGT     + + +     ++ EVHIDGL+VLKI+KHC + LP   AG+LLGLDQ GVLEVTH+FP     +  D +   ED   QD  YQMEMM  LREVNVDNN VG+YQSM+LG+F    LI N  SY E+++ NSVVILYDP+QTA G+LT++A+RLS+ F+   +  KNE I P+EILEELPIKIRNPG+INAL+FDLQ  +R+DCDF+RLDLSTNP+LEKNLE+L  W+DDL+ EQ KF               Q + R  + R++QN E                +++  AP+RM  LL+SNQIS YCSQI+ F G+SF KLFLAGSL K+
Sbjct:   25 AWGTAEGSASVLSKQARTAVVREVHIDGLSVLKIVKHCKDDLPNPAAGTLLGLDQKGVLEVTHSFPIVGPKSAED-EAYGEDYHEQDQEYQMEMMLSLREVNVDNNRVGWYQSMFLGTFNNIKLIQNLLSYHESIA-NSVVILYDPIQTAKGKLTLRAFRLSEKFVEAVKRDKNEFIPPAEILEELPIKIRNPGLINALLFDLQGNERLDCDFERLDLSTNPFLEKNLEYLSAWVDDLAQEQYKF---------------QSEVRRDKWRRKQNPE-------------GGAEEEFQAPDRMASLLVSNQISEYCSQIHHFTGASFGKLFLAGSLHKD 332
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A7S0C594_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C594_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.840e-98
Identity = 179/360 (49.72%), Postives = 224/360 (62.22%), Query Frame = 1 
Query:   37 APIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQ-TGVLEVTHAFPFPTAATGP----------DGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDL---------------------QEEDR---VDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFD-KKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            A IE    I+ VHIDGLA LKI+KHC +SLPQMV GSLLGL    GVLE+THAFPFP  ++            +   A  DMDG +YQ+EMMKMLRE+NVDNNCVG+YQSMYLGS+ TQ+ ++NQ SYQ +LS N+VV+LYDPVQT +GQLT+K YRL+   M + +  KN  I    I +E+P+K+ NPG+I  L+ D+                      +ED    VDC FD LDLSTNPYLEK+LEFLC W+DDL++EQ KF  + RN+AR                   N++ R   E +  EE+        DAP RME LLI+NQI  YC Q++KFAG  F KLFLA  L +E
Sbjct:    3 AIIEPEGPISCVHIDGLAALKIVKHCQDSLPQMVTGSLLGLSVGEGVLEITHAFPFPEPSSATKNVDVVDDEENATAAAADMDGHEYQLEMMKMLREINVDNNCVGWYQSMYLGSYSTQSFVENQLSYQTDLSPNAVVVLYDPVQTTHGQLTLKCYRLTDECMELKKSGKNLYINSKNIFQEIPVKLNNPGLIQGLLLDVVDGTYNSSSPSIAVKTAATGSSDEDLDVGVDCTFDNLDLSTNPYLEKHLEFLCQWVDDLASEQHKFQYFARNLAR-------------------NEKHRKKNEGSRSEENKEEGWTSPDAPRRMESLLIANQIRTYCEQVDKFAGGGFGKLFLANGLHQE 343
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A7S1GHL4_CYCTE (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHL4_CYCTE)

HSP 1 Score: 306 bits (784), Expect = 8.940e-94
Identity = 170/340 (50.00%), Postives = 222/340 (65.29%), Query Frame = 1 
Query:   37 APIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTGVLEVTHAFPFP------TAATGPDGQPAPED---MDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQE----EDRV---DCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            A I+    I+ V I+GLA+LKI+KHC ESLPQMV GSLLGL   G+LE+THAFP P      TA      +   ED   ++G ++Q+EMM+MLREVNVDNNCVG+YQSMYLGS+ T + +++QFSYQ  LS N+VV+LYDP+QT++G L +K +RL++  +++    KN  I PS+I EE+P+ I NPG+   L+ D+       D V   D  FDRLDLSTNPYLEK+LEFLC+W+DDL+ EQQKF  + RN  R+            +KR++  + +  +G               DAP RME LLISNQI  YC Q++KFAG  F KLFLAG L KE
Sbjct:   14 AVIDSEQRISAVRIEGLALLKIVKHCHESLPQMVTGSLLGLAVNGLLEITHAFPLPETQALKTAELAKGEEEDDEDAAGVEGYEFQLEMMRMLREVNVDNNCVGWYQSMYLGSYSTSSFLESQFSYQTELSPNAVVVLYDPMQTSHGNLVLKCFRLTEECLQLQSSGKNTFIDPSKIFEEIPVDISNPGLTQVLLSDVATGRYGTDIVATTDTTFDRLDLSTNPYLEKHLEFLCSWVDDLATEQQKFQYFARNATRRSDR---------RKREEDKENKWLSG---------------DAPKRMESLLISNQIRGYCDQMDKFAGGGFSKLFLAGGLHKE 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A7S2LLA7_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLA7_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.940e-93
Identity = 165/338 (48.82%), Postives = 214/338 (63.31%), Query Frame = 1 
Query:    4 SGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLD-QTGVLEVTHAFPFPTAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEED--RVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            S  +    V  + I+    +T VHIDGLAVLKI+KHC +SLP MV GSLLGL  + GVLE+THAFPFP       G    +DMDG +YQ+EMMKMLRE+NVDNNCVG+YQSM  GS+ T TL++NQ  YQ +LS N+VV+LYDP QT  G L ++AYRLS A M    ++ N  I PS+  EE+PI I+N G+ NAL++DL   D  R  CD+++LDL  + Y+EKNLE +C+W+DDL+NEQ KF  Y R+                    Q+ D+                    DAP R+E LLI++QI  YC Q+++FAGS+F KLFLA SL+K 
Sbjct:   28 SFVYDKSIVMASVIDAKQKVTAVHIDGLAVLKIVKHCQDSLPTMVTGSLLGLMVENGVLEITHAFPFPDQPKDGSGD---DDMDGHEYQLEMMKMLREINVDNNCVGWYQSMLTGSYSTSTLVENQQGYQTDLSPNAVVLLYDPQQTLKGNLVLRAYRLSSACMNAMLKQNNSFISPSKFFEEIPIHIKNNGLANALLYDLNANDGGRFKCDYEQLDLEKDSYVEKNLELMCSWVDDLANEQHKFQYYARH--------------------QKKDD--------------------DAPKRLESLLINHQIRQYCDQMDRFAGSNFGKLFLAKSLRKN 322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: B8C426_THAPS (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C426_THAPS)

HSP 1 Score: 301 bits (770), Expect = 1.240e-91
Identity = 167/340 (49.12%), Postives = 216/340 (63.53%), Query Frame = 1 
Query:   61 ITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLD-QTGVLEVTHAFPFP-----------TAATGPDGQPAPEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDL---------QEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDK---KLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            +T V ++GLA LKIIKHC ESLP MV GSLLGL  + GVLE+THAFPFP           TA    +       +DG ++Q+EMMKMLREVNVDNNCVG+YQSMYLGS+ T +L++NQ SYQ +LS N+VVILYDP+QTA+G L +K YRL++  +++ +  KN  I P +I EE+P+ + NPG++ +L+ D+          E    D  FDRLDLSTNPYLEK+LEFLC+W+DDL+ EQ KF  YTR++                 R    D R+  G +A  E   A ++   + +AP RME LL+SNQI  YC Q+ KF G  F KLFL   L  E
Sbjct:   11 VTSVKLEGLAALKIIKHCQESLPTMVTGSLLGLMIEDGVLEITHAFPFPEPLDDKGDIVKTAEEAANADDEAAALDGHEFQLEMMKMLREVNVDNNCVGWYQSMYLGSYSTSSLLENQLSYQTDLSPNAVVILYDPMQTAHGNLVLKCYRLTEEAVQLKQSGKNNYINPRKIFEEVPVTLSNPGLVRSLLRDVGDGLHGSYDAEGTGADTTFDRLDLSTNPYLEKHLEFLCSWVDDLAAEQYKFQHYTRSL-----------------RSSVGDNRK--GRKAKEEMAQAIEEGWTRSEAPKRMESLLMSNQIRTYCDQVEKFTGDGFGKLFLTSGLHTE 331
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: K0SND2_THAOC (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SND2_THAOC)

HSP 1 Score: 298 bits (763), Expect = 1.120e-90
Identity = 164/338 (48.52%), Postives = 213/338 (63.02%), Query Frame = 1 
Query:   61 ITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLD-QTGVLEVTHAFPFPT--------AATGPDGQPAPED--MDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQ--------EEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDK---KLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            +T V ++GLA LKIIKHC ESLP MV GSLLGL  + G LE+THAFPFP           T  +     E   +DG ++Q+EMMKMLREVNVDNNC+G+YQSMYLG+  T +L+DNQ +YQ +LS N+VV+LYDP+QTA+G L +K YRL+   +++    KN  I P EI +E+P+ + NPG++ +L+ D+         EE   D  FDRLDLSTNPYLEK+LEFLC W+DDL++EQ KF  YTR++                   + N + R  G +A  E   A  +   K DAP RME LL+SNQI  YC Q+ KF G  F KLF+   + KE
Sbjct:   11 VTSVKLEGLAALKIIKHCQESLPTMVTGSLLGLMIEDGCLEITHAFPFPEPLNDKGDIVKTADEANVDDEAAALDGHEFQLEMMKMLREVNVDNNCIGWYQSMYLGTHSTPSLLDNQLAYQADLSPNAVVVLYDPMQTAHGSLVLKCYRLTDEAVKLKTSGKNTFINPREIFQEVPVTLNNPGLVRSLLRDMGDGLHGPYGEEGGPDTTFDRLDLSTNPYLEKHLEFLCTWVDDLASEQYKFQHYTRSL-------------------RSNVDTRNKGRKAKDELAQAIQEGWTKSDAPRRMESLLMSNQIRTYCDQVEKFTGGGFGKLFMTSGIHKE 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Match: A0A1Z5KJ00_FISSO (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ00_FISSO)

HSP 1 Score: 297 bits (761), Expect = 1.870e-90
Identity = 166/354 (46.89%), Postives = 220/354 (62.15%), Query Frame = 1 
Query:   37 APIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLDQTG-VLEVTHAFPFPTAATGPDGQPAPED-----MDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQE----------------------EDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDK--KLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKE 1008
            A IE    I++VHI+GLA++KI+KHC ESLP MV+GSLLGL+ +G +LEVTHAFPFP +        A  D      DG +YQ+EMM+MLREVNVDNNCVG+YQSMYLG + T +L++NQ SYQ +LS N+VVILYDP+QT +G+L +K YRL++  +R+   ++N  I P +I EE+P+K+ NPG++ AL+ D+ +                         V   FDRLDLSTNPYLEK+LEFLC W+DDL+ EQQK   Y R + R K            +RK                + SA D     DAP RME LLI+NQI +YC Q+N+F     EK++L   +QK+
Sbjct:    3 AVIEASERISQVHIEGLALMKIVKHCHESLPHMVSGSLLGLEVSGGILEVTHAFPFPDSRAAAGSAAAVSDTMEGDQDGHEYQIEMMRMLREVNVDNNCVGWYQSMYLGIYSTSSLLENQLSYQTDLSPNAVVILYDPMQTTHGKLALKCYRLTEECIRLKENEENAFIDPRKIFEEVPVKLTNPGLVKALLMDVADGVHDDSSNLQLFEKEHNTNRLGSSTVKTTFDRLDLSTNPYLEKHLEFLCGWVDDLAVEQQKMQFYARQLHRDK-----------HRRK----------------DSSAGDAWASSDAPRRMESLLITNQIRSYCEQMNQFTSEGIEKVYLMSGMQKK 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1129.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP68_9PHAE6.770e-23199.41Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CJJ9_9STRA3.410e-16070.66Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V1NQH4_HETAK1.150e-12560.12Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2RWA1_9STRA1.890e-10153.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S0C594_9STRA1.840e-9849.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1GHL4_CYCTE8.940e-9450.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2LLA7_9STRA2.940e-9348.82Eukaryotic translation initiation factor 3 subunit... [more]
B8C426_THAPS1.240e-9149.12Eukaryotic translation initiation factor 3 subunit... [more]
K0SND2_THAOC1.120e-9048.52Eukaryotic translation initiation factor 3 subunit... [more]
A0A1Z5KJ00_FISSO1.870e-9046.89Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1129contigEcto-sp13_S_contig1129:4698..15393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score647.1
Seed ortholog evalue4.5e-183
Seed eggNOG ortholog2880.D7FNG1
Preferred nameEIF3H
Model size2457
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Exons9
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG1560@1,KOG1560@2759
Ec32 ortholog descriptioneukaryotic initiation factor 3H1 subunit
Ec32 orthologEc-01_005580.1
EC5.2.1.12
Cds size1014
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1129.1149.1prot_Ecto-sp13_S_contig1129.1149.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1129 6314..15393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462590.4533584-UTR-Ecto-sp13_S_contig1129:4697..57931681462590.4533584-UTR-Ecto-sp13_S_contig1129:4697..5793Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1129 4698..5793 -
1681462590.463936-UTR-Ecto-sp13_S_contig1129:5966..63131681462590.463936-UTR-Ecto-sp13_S_contig1129:5966..6313Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1129 5967..6313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462590.4735398-CDS-Ecto-sp13_S_contig1129:6313..64481681462590.4735398-CDS-Ecto-sp13_S_contig1129:6313..6448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 6314..6448 -
1681462590.483447-CDS-Ecto-sp13_S_contig1129:6989..70941681462590.483447-CDS-Ecto-sp13_S_contig1129:6989..7094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 6990..7094 -
1681462590.493352-CDS-Ecto-sp13_S_contig1129:7849..80171681462590.493352-CDS-Ecto-sp13_S_contig1129:7849..8017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 7850..8017 -
1681462590.5052083-CDS-Ecto-sp13_S_contig1129:8726..89421681462590.5052083-CDS-Ecto-sp13_S_contig1129:8726..8942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 8727..8942 -
1681462590.5140288-CDS-Ecto-sp13_S_contig1129:10674..107701681462590.5140288-CDS-Ecto-sp13_S_contig1129:10674..10770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 10675..10770 -
1681462590.5252652-CDS-Ecto-sp13_S_contig1129:11258..113721681462590.5252652-CDS-Ecto-sp13_S_contig1129:11258..11372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 11259..11372 -
1681462590.5367496-CDS-Ecto-sp13_S_contig1129:12081..121741681462590.5367496-CDS-Ecto-sp13_S_contig1129:12081..12174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 12082..12174 -
1681462590.5459673-CDS-Ecto-sp13_S_contig1129:15306..153931681462590.5459673-CDS-Ecto-sp13_S_contig1129:15306..15393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1129 15307..15393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1129.1149.1

>prot_Ecto-sp13_S_contig1129.1149.1 ID=prot_Ecto-sp13_S_contig1129.1149.1|Name=mRNA_Ecto-sp13_S_contig1129.1149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=338bp
MSGAWGTEAVERAPIEEIPLITEVHIDGLAVLKIIKHCTESLPQMVAGSL
LGLDQTGVLEVTHAFPFPTAATGPDGQPAPEDMDGQDYQMEMMKMLREVN
VDNNCVGFYQSMYLGSFCTQTLIDNQFSYQENLSDNSVVILYDPVQTANG
QLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFD
LQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNV
ARQKQACWQDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRM
EGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1129:4698..15393-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1129.1149.1 ID=mRNA_Ecto-sp13_S_contig1129.1149.1|Name=mRNA_Ecto-sp13_S_contig1129.1149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1129:4698..15393- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGGGCATGGGGCACGGAGGCCGTGGAAAGAGCACCTATCGAGGA
AATCCCTCTAATAACCGAGGTTCACATCGATGGCTTGGTAAGAAGCGAGA
GATGGCAGTCGGGAAAGAGACGTGTTCGGGATATACCAGCGCCGGGAGAA
GATGTCGCATCTGTCTAGCCGGGTCTCGGCGTTGCACTTTGTTTCGAGAC
ATTGATACGTATCATCGTTTTGAGATAAAAAATCACAGGCGCAAGGTTCA
AATTTTTAGGGAGCGGCTCGTGGCCTTACACCCGCACACGCAGCAACTAT
CACCACCTTCGGCAATGCGTTGTCGGCAGCAGCTAACTAGTGCACCTCAA
ACGTCTGCGGAGACCCTAGTTCCGAGTAACTCATGCACTTCTTTCTGCTA
TTGACTTCTTTGCTTTACGATGAAGACCGGAAACCAGAGAGTTCACACTG
CGCACGAAACAAGTTCGCCGCCGTCACACATGCTCGTCTGCAGCGCCATG
TACATGCAGAGGCGCAGCAGTTGCATCTTAGCAGTTTTACAGATCTACAG
GAGTAGTTTCGCGAGCATGCGGCCAGCGACGCGAGCGATAGCAAGATGGT
ATTCTGCACAGGATCTTGGATGTCGTTGGCGCTGCTGTGCTCTACCAAAG
CAGTGAGAAGGATTACGTACACTCCCCTGTTTCACCAAACCAACTTCAGG
CGCCTCTCTGTAAATACCATCATAGAGTACAGGTGTAGAAGTAGATGTTT
TCGCGACTACAGCGCGTTTGCGCACGATTGCACCTCTTTGATGCATATAT
ACCTACGCTCGCCCTTTCTGGAAGCACGTTTTCCTCTGGATAACGGAAGC
ACCCACGCTGCTGCTATAGCTGCGTAAGTTATACGTCAAGAGGAGCAGCT
ACATGCATGCGAAGTCCGAGTTGAGGGGAAACGGTAGAAAAAACTGAAGA
GCTTGCATCCCTGCTGGGCGGAGAGATGGGGGACGCTGGAAGCAGGCAAA
GGAGAGAGTGGGGGTCGTACGCCCTCGTCACTGGCGATGAAAACCGTGGT
GCCTGGGGGGGAACATGGGAGACGGGGGGGAAGACGAGGGGACAACGGAG
GGTAGCCATGCGACAGCACCACCACCAGCGGCAGCGGCAGCAGTGTCACC
AGCACAGCAGCAGGCGCACCCGCCTTAGCACCCGCCCCGAGTTTCGAACC
TATGAGGTCTTGTACCCTCCACACAACGCCTCGTTTCACTGCAGCGGAGA
GCGTCGTTTTGTAGCGCAATTGGGGGGTAACGTCGGGACGCTGGTGGTAC
GAGAGGTCCAGCGGACGGCACCCACGGGTCACAGCATGGGGGCCGGTGGG
CTTTCCGAGCAGGACGAGGACCTGCATCATGAGCAGCAGAGGACGGGAGG
ACACCGTGGCGGGGCGCCCGGAGGATGGGGTGTGGAGGCAGGCCCCCCTC
AACCTGGACCGCCACTCATCTGCCTACCCCGTCCTACAGTCCCACACCAC
ACGGGCATGACTACAGAGGGCCTACCCGCACAATGATACCGCTGTCAGGG
TAACGAGCTGCCCATCCATGCCGCCGAACCGGTGTGAGAGGAAAAGTGTG
TTGTGCCGGCCACAACCAACGTGGACGTATGCAGAGGGAGGCCATGCCTG
GGAACAACGAACCAGCCCGGTGCCCAGCCGCTGGCTCCAGGCCGGGCGCC
CCGTGTGGTCTCACCCTTGCGGGTAGGCGAACACCTAACACAGCAGCATG
AAAGGGGATAGTACTAAGACACCAGGAGCAGCGCCGGCGGACAGCCGCGG
ACACCAACAAGCCATCTGGTGTCTGTCGACATACCACCCCCAAGAAACTC
AACACCAGCAGCACCCCCCCCCCCCCCCCCCCGGTTCAGTGGCATCCGAT
CCCCGCCCCACGCGCGCCGCCCGCGCCTTTCATTGGAGCATCCCCATCAA
GGGGGGATTTTCGCGCATGCGCAGTGCGTGAACGTTTGGGGTGTGTGATG
ATGGGGCGTGTCAGGTTGTCTCTGGTCAATGTCGTACCCGCGGTAGACGT
GATGGCAGCATAAAAGTACCGCATTGACCAAAGCCAACTCCTTACGCCCC
CATCACACCATATTATCACACTCGCCTGATTACAGAGGCGACATCATGTA
CAACTGGGGAACCTTGCACAGCTTGGATTAATACATACTATCATATACCA
CACAATCACCGGGCTTCCCACGCTACCACACCCCATGGGAATATTCCGTA
CCATCAAAGTGACATCGCTACTACAAGAATCTCTACCATGCATTCCGCAT
ACTCCCGCTTACAGTTTGTGGACGAAGCCCATTGACGAACAGCCACGGCG
CCCGTGACGCCTCCCGAAAACAAGGCAAGAGGGAGCACCACCTTCAAGTA
TTCAGCGGGCTCCGTTCTTACTCTTAGGGCTCCATGACGAGGAAGAGAAA
GATCTGGGTGTCGCTCTAGTGTAGAGTCTCGTCTACTTGGTCTCGTACCC
GCAATGATGACACGGGTAACCACGTTGGTTGTACCTCCTGTGATCCCAAG
CTGTTACGCCGACGGCGGGGTGCGCTCGGTTTGTCTAAGCCGAACAAAGC
AGCAGCCAAGTACCCAATCTGCTAAATAATCTCCTGGCCGCTTGGGTGAG
TACGACGTTTCACCTTTACCGTCGTGAAGACGGACCGCTTGTTGCCGTCG
GCTCTTGGTTCCGTCTCATCGGCGGCGGTATCTTGGCGGCAATACCGGTG
CTTTCCCTCCTCTGTGTATTTGCTGAAGTATTTTTCATGATGCATGGGTT
TTCTTGTCCACATGATCAATTCGCTTCGCTTTGGCCCCAGTCTCTTCACT
AGACCCCTCCATCTTCTCCCTTTGGTTACGCAGAGGTTGTGCGGCCACAG
TCCGAGACCTTTTCAAACCTTTGGCTAGGGTTCGACGCATGATGGATGGT
GTCAAATATGCACCACCAGTTTGTAGGCGCCATGCTCCTCTGTTTGGAGA
CAGGAGGAAGGGTTCTGATTCGACCCCACAAGCAACAAGGCGATAAAAAT
GCATAATCAATCTTGCCTGCAACCCTAGTCTCTAGAGGCCCCCCACAACC
AAACATAGCGTAGGCTAACAAGTGGATCCTGCCTTGACGGCGATCGCACG
CTCCTCCTTTAAACGGGCAATGTTAACTCGACCTCCAACCACCCGCTCTC
CGTCTTGTTGCATGTGCAGGCCGTCCTTAAAATCATCAAGCACTGCACGG
AGAGCCTTCCGCAGATGGTGGCGGGGTCTCTCCTAGGCTTGGACCAAACG
GGCGTCCTTGAGGTGAAGCAACGTTGAGAGGCAGACAGCCGTGTCAAGTA
TGCGTGCGGTTCTAAGGGTGGAAGAGTCTTTGCGGTGTTCTTTCAAGGAC
GAAGAGCATGTGGCGAAACATCTGGGGAATGTACCTGCAACTTTTTTCTT
TTTCTTTGCTAGAGTCCTGCGAGAGTTGTGTCCCCGACAAGGATGGCGTA
GGTCTCTTCGTGCTATTATACATACAGTACGTATCGCCTCCCTCACGTGT
TTTTACGATATTTAGCAGTGGGCGGCCGTGGAAGTTATGTTGACGGGGCG
CCGTGTATGCGTGGGACCCTCGTACCTGTGCCCCCCTCCCCCCCCCACCC
CACCATTCCCGCGTGATTCATTCCCCTGCACTCCTTCCTTCACCGCTTCG
GTTAGCTCTCTACGGTAGTCTGGCCATGGTGTTCCTGGATGTGTTTTCCT
TTGGCAGTGTTGGCGTGCACCCTTGGGTGGTTGCTGTAGAGATCGAGATT
CATCTTCCCCTGGGAACAAAAACAGACGGTCACGTAATTTCGTTCACATG
TGGTCGTGTTTTGTTCGTGCGTGTACTTCGCAACCCCCCGTGCTCTGAGT
ACGCCCCCCTCCATCCCGGCATGGCAGGGATGCGAGGTCAACGTTCTAAC
GACTACGGCATGCGTTTGCATGAGTACCACCCCCTCCCCCCTCTGCCCTG
CCTCGTATTGTCGAATTCAAGGTAACGCACGCATTCCCTTTTCCGACGGC
GGCAACGGGGCCGGACGGGCAACCGGCGCCGGAGGACATGGACGGGCAGG
ACTATCAGATGGAGATGATGAAGATGTTGAGAGAGGTGTGTACGTCTTTG
CTGTGTCTTTGTTGTTGGCATCGACCGCGCGCTAAGCGACTGACCGATGG
AGCAACGTCAGTCTCAATGCGGCTGACAACAAGAATGCGCTTCTCTGTGC
CATGGTCTGGGAGCGACCCCGTGAGAGGGCGTCATGGGCGAGGGAAGGCT
TTTCTCCGGATGAAAGACAGAAAACGGTAGCAGATGAAGGGAAGGAGATG
ATGTGATCCGTATCGTTACGGTTTTGATTCGATTCGGTGTTGCTGTCGCC
TCTGTCCGCGTGCAATCGACGCGTTGTGAGGCCATGACATTGCGACCGCC
TATTACAAGTACCGGTCCCCGCCCCCCCTCCCTGTCTGTCTGTCTGTTCC
CTTGTGGGTCGTGGCCTCGCCTCGCCGGCTTCTCCCCACCCCTGGCTCGA
GAACGTACATACGATTGCACGCGTTTGTTGTGTCTGCTGAACTTGCGCCA
CCTTTTTTGTTGTTCCATTCAAGGTTAACGTGGACAACAACTGCGTGGGG
TTCTACCAGTCCATGTACCTGGGGTCCTTCTGCACCCAGACGCTGATCGA
CAACCAGTTCAGCTACCAGGTACAGAGGTAGATGCGGCGAACAAGGGGTT
TCGACATGAGTTGTACCGCGCCATGCGACAGCGTTGTTTGGGGTGACATG
TATTCCACGGCCGGGATTGTTTGTTGTTGTAGTTGTACAAGTACGTAAGG
GCAACAAGCTGAACAATAAAAGAGGAGAATTAGGGCGCGGCGTTGGGGGA
ATGGGTACACGAACGGGTGTTGCGTGAAGCATGTTTCAACCTAGGGTCAG
CCTGTCTCTAAGGATAAGGATAGTAACCGCTCTTTGTCAGTCGTGTCGTG
ACGTTCCCTTTCTCTGTCGTCTCATCCTGTGGTCAACTACAGCAGCACGA
GGAGTGCGTGCAAAAGATCAACTGTACGCTCAGGTTGGTCCAAAAACCGC
AGACACGGGCGTGAATGTGTGCCAGGCATATTGGTGTAGGTCTTCTTTCG
TGTGCCCGCATGGCAGGTGGACTGGACCCTGCTTTTCGAAAGCAAGCAGT
GTGTCCGAGGGGAATTCACAACTGTATACCGTAGCTTGATTGCACCCTAC
CCTCCTGCTGAGAATGGTCCAAGTGTTGTAGGCGACACACAAGATGCCAC
ACCCCCTGTGCCGTTGTTCAAAGCTCGATGAACTTGACGAAGAAGATGCA
TACATGAAACGATGCTCTTTCGTAGAGTCATGGCCGAAACAGGTCCCAAC
GCCGCCGTTCTTGGCAATGACACTCTTTCTGCTGTTGAGAAATCGAATTA
TGAAAGTCAGTCCACGGGATGTGGTGTCCTATGTCTCCGTATGGTAAAAC
ATGAGCAGCAAGCATTGGTCGGTGACAGAGTGATCTCTACTCCATTCTGT
CTCTCATTCCGACATTTTTCCTAACTGATTTTTAGGGAGAATGGGCGCTT
GCGAGAACAAACAACGTCGATAGTTCTGGTGCCCCGCTTCCCTCTCGGGG
CGTGCGGTGTCGTGCCTTTGATCCGTCGTAATATGAACGTGGCTGTTACC
TGCGCACAGCACATGTGCATACCAACCGCCTCGTTTTGTCTGGTGCAAGG
GTGAGGTTGCTTGGGAAGCGCTGATTGTCATGGCATGTGCAACGGTGCGT
TGGATTTGCTGTTTATCATAAACTTTGTTTTTTCCTCATGGCCATGACGC
AAGAGTCATCGGTCCCCGGTTGGGCATGCACTACTGTCGGTGTGGTATTT
TCGCCCCAAGCTGTGTGGTTGCCTCTTCTTGTCTCAATGGAAACCCAGGG
GAAATGTAAAAAATTTACCCCACTCTCTCCCCCTGTTGTTATGTCCCAAT
ATACGAAAACAGGCTGTGTCCATCTTATGGTCCCCGGTTTCCGTTTGTAG
TGAGTCCCTTTCTTCTCTTGCGCGAGCGCACAGCCGTGGTGTTGGTATAC
CAAACTCCGTGGTTTTGGCATAAGACGCGGCACCCTTGCTTTACGCGCTG
ACGGCACAACGCGGCCCGCCGCCCATTTTTTTTGCTTTTGCGTGCGGAAG
CACCAGATACCGCACACCATGTGCAACAGAGCAGCTCCCCCCCCCCGCAC
AGCAGTGGCGTGCTTTGTTTTTTTTGTTGCAAGAACGATTCCCAGACGCT
GCGCCCGTAGTCGGTCGTCCCCTGACCCCTACCCTGTTTCTATCCCTGTG
TGCGTATCCCGTGTTTTTTCTCCGTACCCACCCACCCGTCGGAACCGGAA
CCCCTCCGCCAAACTATTGATGTTCGCCGTGTCCTGACTGATGACCTCCA
GGAGAACCTGAGCGACAACTCGGTAGTGATCCTTTACGACCCGGTGCAGA
CGGCAAATGGGCAGCTGACGATCAAGGCGTACCGTCTGTCGAAGGCGTTC
ATGCGAGTCTACCGCGAGAAGAAGAACGAGGTCATCAAGCCTTCCGAGAT
CTTGGAGGAGCTGCCCATCAAGATCAGGAACCCGGGCATCATCAACGCCC
TCATCTTCGACCTCCAGGTATGTGGGTGGGGTTTGGTGATGGAGGAAGGG
AGGCGTGATTTAGTGACCGTTCGTTTTTCTTGGCGTTTCGATCGTGTTGT
CGTTGTCGATGTCGATGTCGACGTCGATGGCGGTGGTGGTGGTGGTTGTT
CGGGCATCTCTGTGTTTAACGCTTTGGATGTGTAGGTAACCTCGTGTGGC
GGGTAAAACTCCTCATGTTGTCGTATCCACAGACTCACGCACGCCGTGAA
TAACCAAGGTTTCTACGCGTACAGTTGCATCAAGTACGATTCGGTTGGGA
TTGTTGACATGGTCGATATAGCCCGGGCGTCTACCCCATTACATATGCCA
AAAGGAAAACCGCCGGTTTCGCTTTCCAGTACTACTGTATCGTATCGGTC
GCCTTCTGCTGTAGCTGTCGTGCTCAGTCGGGTGCATCCACAGGCTCCGA
TGGGATAAGTTTCGTTACTTGTCGGCTCCCCTCTGTCTCGTATCTCTTCA
TTTTAATCTTTTTTATTATAGAGAATATACGTAACTTCGAAGTACAATCA
CAGAAGACAGCAATTGGAGACAATACCACAGCCGAACGGGATGTTAATAT
CTTCGCGGTGAGTGGGAAGAAACCGGCTGGATGCTGGGCTTTTTTAGACT
ATGAAAGCCTTCGAACGGAACTTTTATCAGTGATGACAGCTATTGCTGTT
TCTCTTTTCTTTTTTCAATACGGCAGGAGGAGGACCGCGTGGACTGCGAC
TTCGACCGGCTAGACCTGTCGACCAACCCGTACCTCGAGAAAAACCTCGA
GTTCCTCTGCAACTGGATAGACGACCTCTCTAACGAGCAGCAGAAGTTCA
ACCAGTACACCCGGAACGTCGCACGGCAGAAGCAGGCATGTTGGGTCTCG
TCTTGTTTTGTCGTGTCTGGTGGAAGGGAAGGAGGGAGTCTGCGTGTTTC
CCATCTTCGAAACAGTGCTACACAACGGCTTCTAACGCTCGCAGAATGAT
ACCGATTCAGCCACTCACTCGGTGTACGCATTTTACAGATGCCCACCCCC
CCCCCCCGATTTATTTTTTTTCTCTTGTACGAAGCGGCTCCAGACACCGT
AGAAGAAACTTGGAAGAGGTAGACGTTGGATGGTTTAGACTACCCGGAGA
GAGAAGCCATAGTGGGTTGTCCGCCATACAAGACCACGGCTGACCACTAT
GAGCTTGCCCAGCGCTTGCCCTGCGCGCCTACGCCGTAGAGCAGTATCTG
ACACCCGTTCGCAATGGTATTTGGCGGGGTAGGGTACGAAGCCGTAGGTA
TTATAGGTGTAGTGGACTTGGACCTGGAGTGTTTTGTTCCGTCGGAGACG
GCCGTGTAGGGTAGATGCATTCGGGTGTTGGTCGATGGCCTATTATTCTA
GTGTAAGCTTGACGAGAACAAACGTGAGGTCCCTCGTGAGAAGTCTTGCG
GTACTCAATAGGCTCTCGTACACAAGTATGTACGCATCTTGGTGGACGTG
TGTGTATATGTACGTCTTCTGTCTCCCGTTTCGACCAGCTTTTTTTTTGT
TTTCCTCCACCGGGGCGTACATTTGACTCAACCTCCTCCTCCTCCGTGTG
CCCCCCTCGCCCTTATCCCTTCCATACCCACGCCGACGTGTCCGTGGAGC
AGGACCAAGCGCGATTGCTCCAGAAGCGCAAGCAACAAAACGACGAGCGC
CGAGCTGCGGGCGAGGAAGCGCTGCCGGAGGAAGATTCGGCGTTCGACAA
GAAGGTTTGTTGGGTGTTCGGTGTTGTCTGCGTGGTGTAATGGACAACCT
GTTTCATTTGGTGGGTGCTGTAGTCTGCGTGCTGGGTTGGACAAACAGTT
TTTTGTTCGTCATCGCTAGTAGGCAAAGGCCACCTCTTTTGCACTCTGCG
CTGCTCTTTCCTTTTCCCGTTTAGTCTTGAGTCTACGATGGTAAGTTCAG
GTGTATTACGAACAAACTGGAAATTCGGCGAGCGGCTTTTTCGCCGATAT
CTTCATTAATTCAGGTTCGGCGAGAGGACAACATACATCCGTTTGTGTCT
TTTAGAAACTTTAAGGTTGTTGTATTTGGTTGTTCTTTGGTTGGGGAAAG
ACACAGTACAAGGTCTTGCGGGGGCAGGTCGGGGGGGGGGGCTCACGTTG
GGTTTCGACACGAAGCCAAGAAATAACTCTAGGAGCACGACCTTATATCC
AAGTAGCATGTAATGACAAAGTCTGCTCACGTTTGTAATACTTCCCCTCT
CCTCCATCCTCCTCGTCTGCGCGGTGCCCTTTTTTTCTTCTTCAGTTGGA
TGCGCCGAATCGAATGGAAGGGCTATTGATCTCGAACCAGATCTCCGCAT
ATTGCTCTCAGATCAATAAGTTCGCGGGGTCGTCCTTCGAGAAGCTCTTC
TTGGCCGGGTCTCTGCAAAAGGAGGCGTGATTCAGTTGGGTATAATTACG
GGGGAGGAGGGGTTGTTTTTTTGTCTTTCGGTGTCATCCGCACTTACTGC
TATCCAGGGATTCGGTCGTGCCTGTTCTTGAAATCCCGCTGCAGGTGTTT
TGACCAATCTGCTAATTGCGTGCCACAAAAGCTTTTTCTCTCTGCTGTGT
GTGTCGTATGGTTTCCCACAAGTAGCCTTGGATTCGAAACCCATAGCCCT
AAGTACAAGAGAGAGGGAGATGGGGAGAGCGGGATTGTGAGAGGGAGGCC
ATCATCGGGATTTTTTTGTGCCTCTCCTTTCCACGTGTGTGTCTAGAAGG
GTGCGCAGTCGCATCGCATCATTAGCAGCATAGAACTAGCAAGAAAGGTT
TGTTGAAGCTGAGTGATGGGCGGCGAACGGCCATGACCTTGCAGTGGTGG
TGGTGTTTTTGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CAGCTACAGCTGCTACGCCTTACCAGCATGTTTGCTTCTTGTGTGCCAAG
CGTAGCTCTTTCTGCTCACAAAGTCTTGAGTAAGAAAGAGCGTGACGTGA
CGACGTGTCGGACAGTATCTCTGGCCGGGCGGACTTGGAGGAGTTGATTG
CTGATTGCTGCTGTGGTTTGTTCTTGGCGAAGAACACGACTGAAATATGG
TGTTATTTCGCCGATTAGTCTTGACGTTTGTCTCTCTTCAAGCGCTGTTC
ACTTCTACGGCTTTTGCTTGTGCCTTTCCGTCCAATCAAGTCTCTCGGTC
CTCCTCAAGTTTGTAGTTGGAGAAGAGAAGAGAATCGAACGGTTCCGTGC
CATATTTGGCTGAAGAGAAGCAGCGGCGACGACTACAGCAGGACAGCCGT
GACGTCAAGGTGCTCGTTTCCTGACCTTGACGTTCAAGCTCGTTTGACCT
GCCTGCGCCAATCGAGAACAGGGTTTTCTTCTAGAGGAGGAAACGAGTGA
GAGGTGGTGTGAAAAGGCAACACGTTCAAACCATAAGCATGTACCCCAAA
CCACCCGTGTGGAAGCAGTGACGAGTCAACCACAATGGCGAGGAAAAGTC
GTTCTCAGCTGTCCCGTTTGGTTTTGCGCTTTTCTTGTGTCGATTTGTGA
CACCTACCTGTGAAAAACATTTGGAGTACGGTTCGAACCACAAATAATCG
GGCTGAACCTTTCCTTGCCCGCCCCCGGTCGCGGGTTTGTGCCGTTGGCA
AAAAAAACAAAGAGAAGATAGGGCCTTGATACGAAGTAGAACGCATGCAT
ACGCACGTAAAGGTGGGGCTGGTGTAACGGACGTGTTGGGCTCGTGTCTT
CCCACCCGCGCACGTTTGTTCGTGGCCTTCTTGCGCTACGATGCATCTCG
GGTATGCATGCCCAGGTAGACATGTAGGTTATTTCTTGTGGTTTTTCGGA
GGGAGAACTAGAAGTTTGTTGTGTGAGTGTTCTGTGACGATGTTACGGGG
GCCGAAAAGTAACCCTGCAAGTAATAAACGGGTCCGAAACCAAGTTGCGA
GAGCATGTGCATGCAAGAACAGATTGAGACGCTTTCCCTCCTTCCCCAAC
ACTACCATGAACTATATGTAGTTGTTCAACATCGGTTACAAGAAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1129:4698..15393-

>mRNA_Ecto-sp13_S_contig1129.1149.1 ID=mRNA_Ecto-sp13_S_contig1129.1149.1|Name=mRNA_Ecto-sp13_S_contig1129.1149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1129:4698..15393- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGGGCATGGGGCACGGAGGCCGTGGAAAGAGCACCTATCGAGGA
AATCCCTCTAATAACCGAGGTTCACATCGATGGCTTGGCCGTCCTTAAAA
TCATCAAGCACTGCACGGAGAGCCTTCCGCAGATGGTGGCGGGGTCTCTC
CTAGGCTTGGACCAAACGGGCGTCCTTGAGGTAACGCACGCATTCCCTTT
TCCGACGGCGGCAACGGGGCCGGACGGGCAACCGGCGCCGGAGGACATGG
ACGGGCAGGACTATCAGATGGAGATGATGAAGATGTTGAGAGAGGTTAAC
GTGGACAACAACTGCGTGGGGTTCTACCAGTCCATGTACCTGGGGTCCTT
CTGCACCCAGACGCTGATCGACAACCAGTTCAGCTACCAGGAGAACCTGA
GCGACAACTCGGTAGTGATCCTTTACGACCCGGTGCAGACGGCAAATGGG
CAGCTGACGATCAAGGCGTACCGTCTGTCGAAGGCGTTCATGCGAGTCTA
CCGCGAGAAGAAGAACGAGGTCATCAAGCCTTCCGAGATCTTGGAGGAGC
TGCCCATCAAGATCAGGAACCCGGGCATCATCAACGCCCTCATCTTCGAC
CTCCAGGAGGAGGACCGCGTGGACTGCGACTTCGACCGGCTAGACCTGTC
GACCAACCCGTACCTCGAGAAAAACCTCGAGTTCCTCTGCAACTGGATAG
ACGACCTCTCTAACGAGCAGCAGAAGTTCAACCAGTACACCCGGAACGTC
GCACGGCAGAAGCAGGCATGTTGGCAGGACCAAGCGCGATTGCTCCAGAA
GCGCAAGCAACAAAACGACGAGCGCCGAGCTGCGGGCGAGGAAGCGCTGC
CGGAGGAAGATTCGGCGTTCGACAAGAAGTTGGATGCGCCGAATCGAATG
GAAGGGCTATTGATCTCGAACCAGATCTCCGCATATTGCTCTCAGATCAA
TAAGTTCGCGGGGTCGTCCTTCGAGAAGCTCTTCTTGGCCGGGTCTCTGC
AAAAGGAGGCGTGA
back to top