mRNA_Ecto-sp13_S_contig11272.1133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE) HSP 1 Score: 325 bits (833), Expect = 6.790e-108 Identity = 162/180 (90.00%), Postives = 164/180 (91.11%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLG----------------VYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLG VYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG++ARVAVVDFDVHHGNGTQDVLCRTEHPGFL
Sbjct: 131 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGGLGGGDRGGPQERAMAVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFL 310
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI) HSP 1 Score: 266 bits (679), Expect = 2.300e-79 Identity = 141/181 (77.90%), Postives = 141/181 (77.90%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLG----------------VYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGHMARVAVVDFDVHHGNGTQDVLCR-TEHPGFL 492
SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLG VYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG C TEHPGFL
Sbjct: 1573 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGGLGGGDRGGAQERAMAVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG--------------------TCCAWTEHPGFL 1733
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A7S3NJX8_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJX8_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.720e-40 Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 1
Query: 25 MVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
++ + +L AH TY+ +LR R + S+ L G +DD DT GN+ +W+A++ A+GAVL A+D V GEA NA CAVRPPGHHAG + +GA SNG+C+LN+ AL A YA H + RVAV+DFDVHHGNGTQD+L RT P FL
Sbjct: 932 IIRAQALLSYAHDHTYLAELRRRCYDLESNATMLF---GEDDDF-----DTCGNRDTWDASVAASGAVLTAIDAVACGEAKNALCAVRPPGHHAGATICALGAPSNGYCVLNHAALGAKYAVHERGLRRVAVLDFDVHHGNGTQDILARTYDPAFL 1079
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: F0Y5Z7_AURAN (Hist_deacetyl domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Z7_AURAN) HSP 1 Score: 152 bits (385), Expect = 8.270e-40 Identity = 83/166 (50.00%), Postives = 105/166 (63.25%), Query Frame = 1
Query: 16 WVEMVTPE-------TMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
WVE E +L AHSR YV +R R + ++ L G ED+ DT GN+ +W+A++ A+ AVL+AVD V+ GEA NA CAVRPPGHHAG ++ +GA SNG+CILN+ AL A YA H + RVAV DFDVHHGNGT+DVL RT P F+
Sbjct: 1447 WVERSVHEGYLGRATALLSYAHSRVYVSAVRRRCLDLKTNATMLF---GGEDE------DTCGNRHTWDASLAASAAVLQAVDAVVSGEAKNALCAVRPPGHHAGASVNALGAESNGYCILNHAALGAKYAAHERGLQRVAVFDFDVHHGNGTEDVLARTCDPRFM 1603
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A1Z5JQI9_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI9_FISSO) HSP 1 Score: 149 bits (376), Expect = 1.300e-38 Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYA------HHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
SVD +++ + +L +AH+++Y++++R R A L D S D G DT G+K +W+AA+ A V+ AVD++++GEA +AFCA RPPGHHAG LH M AVSNGFCILN A AALYA G +++V V+DFDVHHGNGTQD+LC T P FL
Sbjct: 733 SVDDVYIDFALKK-VLPMAHAKSYLERMRMRCALAKDDDRGLILTDDSSGDGGA---DTRGSKGTWDAAVAAVATVVSAVDKIIYGEASSAFCATRPPGHHAGRTLHPMKAVSNGFCILNAAACAALYAVAPVSEGGLG-LSKVCVIDFDVHHGNGTQDILCSTYDPRFL 897
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A1Z5JP44_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP44_FISSO) HSP 1 Score: 147 bits (372), Expect = 4.490e-38 Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYA------HHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
SV+ +++ V + +L +AH+++Y++++R R A S L D S D G DT G+K +W+AA+ A V+ AVD++++ EA AFCA RPPGHHAG LH M AVSNGFCILN A AALYA G +++V V+DFDVHHGNGTQD+LC T P FL
Sbjct: 737 SVNDVYIDFVLKK-VLPMAHAKSYLERMRMRCALARDSDRGLILTDDSSGDGGA---DTRGSKGTWDAAVAAVATVVSAVDKIIYAEASTAFCATRPPGHHAGKMLHPMKAVSNGFCILNAAACAALYAVAPVSEGGLG-LSKVCVIDFDVHHGNGTQDILCSTYDPRFL 901
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A7S2K2L8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2L8_9STRA) HSP 1 Score: 147 bits (371), Expect = 6.120e-38 Identity = 78/168 (46.43%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 4 VDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYA----HHYGH-MARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
V +++E+V +++L AH+ +Y+ ++++++ + V D S++D G G DT G++ S+ AA+T GA ++AVD V+ G+ NAFCAVRPPGHHAG EL M A+SNGFCILN+ A AA++A G + RV V+DFDVHHGNGTQD+LC T FL
Sbjct: 809 VKESYIELVE-KSILSKAHNASYLRKMKSKIAAIPADVTGFPLTDDSDEDTG--GEDTKGSRGSFTAALTGVGAAIQAVDMVVGGQCANAFCAVRPPGHHAGKELRAMNAISNGFCILNSAACAAIFAVTPVSEGGRGLKRVVVIDFDVHHGNGTQDILCSTHDSRFL 973
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: B7GE87_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GE87_PHATC) HSP 1 Score: 146 bits (368), Expect = 1.550e-37 Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH------YGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
+VD ++++ V T+L AH Y+ ++R R A + E L + SE G G DT G+K +W AA+TA A + A D ++ GE+ NAFCA RPPGHHAG LH M AVSNGFC+LN VA AA++A G + RV ++DFDVHHGNGTQD+LC T +P FL
Sbjct: 785 AVDESYLKYVE-HTLLPKAHDSAYLKRMRGRCAAAVNETEILVLTEDSE---GNGGSDTHGSKGTWAAAVTAVAAAVAAADMIVGGESTNAFCATRPPGHHAGKGLHPMKAVSNGFCVLNAVACAAIHATSSILEGGLG-LKRVCIIDFDVHHGNGTQDILCSTFNPHFL 949
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.590e-37 Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 46 LMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
L AH+R+YV +R R + + T + G ED+ DT GN+ +W AA+ A+ AV++AVD VL GEA NA CAVRPPGHHAG ++ +GA NG+C+LN+ AL A +A H + RVAV DFDVHHGNGT+D+L RT P F+
Sbjct: 1325 LAYAHTRSYVGAVRQRCLDLATEA---TMIFGGEDE------DTCGNRDTWGAAIAASAAVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGYCLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFM 1464
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Match: A0A448YZ95_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZ95_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.700e-36 Identity = 78/171 (45.61%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 1 SVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSS-VECLTAVDGSEDDLGVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH------YGHMARVAVVDFDVHHGNGTQDVLCRTEHPGFL 492
++D A++ + E +++ AH +Y+ +++ + A V LT +D G G DT G+K SW AA++ GA ++ D +++GE N FCA RPPGHHAG ELH M AVSNGFCILN+ A AALYA G ++RV ++D DVHHGNGTQD+LC T P FL
Sbjct: 854 TIDDAYLNLAENE-VIVRAHKMSYIQRIKKKCMAAPEDDVVALT-----DDSDGNGGEDTKGSKGSWNAALSGVGAAIKGADMIMNGECLNVFCATRPPGHHAGRELHPMKAVSNGFCILNSAACAALYATAPISDGGLG-LSRVCIIDIDVHHGNGTQDILCSTYDPRFL 1017 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11272.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11272.1133.1 >prot_Ecto-sp13_S_contig11272.1133.1 ID=prot_Ecto-sp13_S_contig11272.1133.1|Name=mRNA_Ecto-sp13_S_contig11272.1133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp MVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGVYGRDback to top mRNA from alignment at Ecto-sp13_S_contig11272:2312..4447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11272.1133.1 ID=mRNA_Ecto-sp13_S_contig11272.1133.1|Name=mRNA_Ecto-sp13_S_contig11272.1133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11272:2312..4447- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11272:2312..4447- >mRNA_Ecto-sp13_S_contig11272.1133.1 ID=mRNA_Ecto-sp13_S_contig11272.1133.1|Name=mRNA_Ecto-sp13_S_contig11272.1133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11272:2312..4447- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |