mRNA_Ecto-sp13_S_contig11271.1132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11271.1132.1
Unique NamemRNA_Ecto-sp13_S_contig11271.1132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11271.1132.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 9.450e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  112 RKTAERKVLVEMPPTKKGLLRRVLPS 189
            RKTAERKVLVEMPPTKKGLLRRVLPS
Sbjct:  394 RKTAERKVLVEMPPTKKGLLRRVLPS 419
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11271.1132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE9.450e-6100.00PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11271contigEcto-sp13_S_contig11271:678..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size190
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462589.39055-CDS-Ecto-sp13_S_contig11271:677..8661681462589.39055-CDS-Ecto-sp13_S_contig11271:677..866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11271 678..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11271.1132.1prot_Ecto-sp13_S_contig11271.1132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11271 678..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11271.1132.1

>prot_Ecto-sp13_S_contig11271.1132.1 ID=prot_Ecto-sp13_S_contig11271.1132.1|Name=mRNA_Ecto-sp13_S_contig11271.1132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
LCFGQFVGSAGGSAKYTQAHPRLSLCSPSRSSPSPSSRKTAERKVLVEMP
PTKKGLLRRVLPS
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mRNA from alignment at Ecto-sp13_S_contig11271:678..867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11271.1132.1 ID=mRNA_Ecto-sp13_S_contig11271.1132.1|Name=mRNA_Ecto-sp13_S_contig11271.1132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11271:678..867+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGTTTTGGTCAGTTTGTTGGCTCGGCCGGTGGTAGTGCCAAATACAC
ACAAGCACATCCCCGGCTCAGTTTGTGCTCTCCATCCCGCTCCTCCCCAT
CTCCGTCGTCCAGGAAAACGGCGGAGCGCAAGGTGTTGGTGGAGATGCCG
CCGACGAAGAAGGGGTTGCTGCGGCGCGTGCTACCAAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11271:678..867+

>mRNA_Ecto-sp13_S_contig11271.1132.1 ID=mRNA_Ecto-sp13_S_contig11271.1132.1|Name=mRNA_Ecto-sp13_S_contig11271.1132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11271:678..867+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGTTTTGGTCAGTTTGTTGGCTCGGCCGGTGGTAGTGCCAAATACAC
ACAAGCACATCCCCGGCTCAGTTTGTGCTCTCCATCCCGCTCCTCCCCAT
CTCCGTCGTCCAGGAAAACGGCGGAGCGCAAGGTGTTGGTGGAGATGCCG
CCGACGAAGAAGGGGTTGCTGCGGCGCGTGCTACCAAGC
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