mRNA_Ecto-sp13_S_contig11266.1127.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11266.1127.1
Unique NamemRNA_Ecto-sp13_S_contig11266.1127.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: A0A6H5L667_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L667_9PHAE)

HSP 1 Score: 874 bits (2257), Expect = 1.590e-298
Identity = 812/1141 (71.17%), Postives = 853/1141 (74.76%), Query Frame = 1 
Query:  244 PPTTRVSIKLTSAARRNARKPTEVAKAPAVPVPAATILRGPSVAHRESGRRTGNSDHGSDKDDCSFLEDG------EIESSSSSPTACPFKAAVEATKLVQKAKEELCLAKLVTEKRKDMVDEKLRDTDAAWVQQLSVKAMNAVTAASNMTSGAAAAMYTANREDPRNQATASTAAXXXXXXXXXXXXXXXXXXXXQRRRWKRINRNASTSAATPPAGTSQPGERGAATTAGMEVHKKRGINATGTMATAAMPPAFRNVSSDESEAALAMAAMAQQPVLPARETEAMRPTAGPAETTTVQAGYSHRKGDISAGSPTVVAAAAAGIAAIDSAPWRMPPAAAALPVTASAPSAGTGMAMEVEEPHSTESAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEEKACQMTAAAALVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENQARSTESAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGMSAMDEQRPCKTAAAAVSATAVETAA-WSMAPLLAALAVPGEHVGEQDGATGVQGSKNEEEEFEEGEIRLERKTSIEVTNRWIS-LGCTPAEAAAAFAPAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATATFREPGALLASARASERTPTPSAAVLQTAKPSPAVGKTVDAPPMVESVEQEAQGEPNRSLGVGDSEHGGVGRRAEFQDTVSPPRLSPPAPSKIRQTTVAVVESLAAKTEEQVPLLGLAETSSSPSDPTCAPVTATTVADPAYGETTTGFITSSQGAALDDKAPTTASTSSRDTAQLLLLRDRAVLRERKRAKMRMSSRSSLLTMASPARAAAVRTRTRARFCRQGRVARKALRREDVMSRGTSVLWRGGGSNNGGTTAVGKEVEEVRENRDDRKVTNAPNGAVEAAQTQSWSSSAEIVRRPQQ-QKQKQQERLSTLIGMHRIVSDIRTVRRAYKTDAFRLRV*RTSASRQGEV 3639
            P   RVSIKLTSAARRNAR P EVAKA A PVPA+TILRGP VAHRESG R  NSDHGSDKDD S LED       + E SSSSPTACP KAAVEAT+L Q A++ELCLA+LVTEKRKDMVDEK+RDTD AWVQQLSVKAMNAVTAASNMTSGAAA MYTAN  DPR+QA  STAA                    QR+RW+RINRNA+ SAATPPAGTSQPGERG  TTA                                   A+AMAA+AQQP LP RETEAMRP  G  ET TV+AG+SHRK D SAGSPT   A+A G+AAI SAPW +PPA AALPVTASAP+AGTGMAMEVEEPHSTESA XXXXXXXXXXXXXXXXXXXXXXXXX      IVE++ACQMTAAAA +A                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XX VGG+SAMDEQRPCKTAA   SATAV+TAA WSMAPLLAALAVPGEH GEQDGATGV  S+NEEEE EEG IRLERKT IEVT RW+S LG TP E+AAAFA AK  XXXXXXX     X XXXXXXXXXXXXXXXXXXXXXXXXXX                      PATATF EPGALLASARASE   TP+ AVLQT KPSPAVGKTVDAPPMVES+ QEAQGEPNRSLGVG+SEHGGVGR AE  DTVSP  LSPPAPSKI QT VAV ESL AKTEEQVPLLGLAETSSSPSDPTCAPVTATTVADPAYG TT GF T SQGAALD+KAPT+ASTSSRDTAQLLLLRDRAVLRERKRA+M++SSRS+LLT               ARF RQ R ARKALR                  NNGGTT VGKE EE RE  DD KVTN  NGAVE +QTQSWS SAEIV+RPQQ Q+QKQ+ERLSTLIGMHRIVSDIRTVRRA KT AFRLRV RT+A RQGEV
Sbjct:    7 PARARVSIKLTSAARRNARTPAEVAKASAAPVPASTILRGPLVAHRESGMRNVNSDHGSDKDDYSSLEDXFTFDGDDFEGSSSSPTACPLKAAVEATELAQNARDELCLAELVTEKRKDMVDEKMRDTDVAWVQQLSVKAMNAVTAASNMTSGAAAVMYTANNGDPRSQAMGSTAAVTAAGTCSTSAPSSTP----QRQRWERINRNANASAATPPAGTSQPGERGTTTTA-----------------------------------AMAMAALAQQPALPPRETEAMRPIVGSVETKTVKAGFSHRKEDGSAGSPTEAEASAVGVAAIGSAPWGVPPAPAALPVTASAPAAGTGMAMEVEEPHSTESAXXXXXXXXXXXXXXXXXXXXXXXXXXGDPETAIVEDQACQMTAAAAPIA-------------------------------------NTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELAAXXXVGGISAMDEQRPCKTAAXXASATAVKTAATWSMAPLLAALAVPGEHAGEQDGATGVPESENEEEELEEGAIRLERKTFIEVTKRWVSTLGYTPPESAAAFAAAKAGXXXXXXXAQTKAXKXXXXXXXXXXXXXXXXXXXXXXXXXXMTKARS----------------PATATFLEPGALLASARASEEILTPTTAVLQTVKPSPAVGKTVDAPPMVESIGQEAQGEPNRSLGVGNSEHGGVGRMAEHNDTVSPLGLSPPAPSKIHQTAVAVAESLVAKTEEQVPLLGLAETSSSPSDPTCAPVTATTVADPAYGVTTKGFTTFSQGAALDEKAPTSASTSSRDTAQLLLLRDRAVLRERKRAEMKVSSRSALLTXXXXXXXXXXXXXXXARFSRQARAARKALR------------------NNGGTTTVGKEGEEAREKSDDGKVTNTRNGAVEGSQTQSWSLSAEIVQRPQQRQQQKQRERLSTLIGMHRIVSDIRTVRRACKTYAFRLRVWRTAAWRQGEV 1037
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BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: D7FSZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ5_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 7.800e-130
Identity = 671/1217 (55.14%), Postives = 715/1217 (58.75%), Query Frame = 1 
Query:  256 RVSIKLTSAARRNARKPTEVAKAPAVPVPAATILRGPSVAHRESGRRTGNSDHGSDKDDCSFLEDGE------IESSSSSPTACPFKAAVEATKLVQKAKEELCLAKLVTEKRKDMVDEKLRDTDAAWVQQLSVKAMNAVTAASNMTSGAAAAMYTANREDPRNQATASTAAXXXXXXXXXXXXXXXXXXXXQRRRWKRINRNASTSAATPPAGTSQPGERGAATTAGMEVHKKRGINATGTMATAAMPPAFRNVSSDESEAALAMAAMAQQPVLPARETEAMRPTAGPAETTTVQAGYSHRKGDISAGSPTVVAAAAAGIAAIDSAPWRMPPAAAALPVTASAPSAGTGMAMEVEEP--------------------------------------------------------------------------------------------HSTESAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEEKACQMTAAAALVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENQARSTESAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGMSAMDEQRPCKTAAAAVS-------------------------------------ATAVETAAW---------------------------------------SMAPLLAALAVPGEHVGEQDGATGVQGSKNEEEEFEEGEIRLERKTSIEVTNRWISLGCTPAEAAAAFAPAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---ATATFREPGALLASARASERTPTPSAA--VLQTAKPSPAVGKTVDAPPMVESVEQEAQGEPNRSLGVGDSEHGGVGRRAEFQDTVSPPRLSPPAPSKIRQTTVAVVESLAAKTEEQVPLLGLAETSSSPSDPTCAPVTATTVADPAYGETTTGFITSSQGAALDDKAPTTASTSSRDTAQLLLLRDRAVLRERKRAKMRMSSRSSLLTMASPARAAAVRTRTRARFCRQGRVARKALRREDVMSRGTSVLWRGGGSNNGGTTAVGKE 3369
            RVSIKLTSAARRNAR P E AKAPA PVPAATILRGP VAHRE G+RTGNSDHGSDKDD SFLE         +E SSSSPTACPFKAAVEAT+L QKAK+ELCLAKL  EKRKD V +K+R+TD AW+QQLSVKAMNA+TAASNMTSGAAAAMYTA+REDP+NQAT S AA   XXXXXXXXXXXXX    QRRRWKRINRN + S ATPPAGTSQPGER   TTA MEVH KRGINA+GTMATAA P   RN SSDE+   +AM    +QP      TE+                                      +A I + PW MP A AALP  ASAP+  + MA+  ++                                                                                              STES V        XXXXXXXXXXXXXXXXXXXXXXX      CQMTAAAAL+AIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +   A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXX                + AA +                                     A + E+A                                         + A  L                                     R T   V                       XXXXXXXXXXXXXXXXX                  XXXXXXX      XXX     XXXXXXX      AT+     L A A + E+      A  V ++ K    +G+         S+E EAQGEPNRS G+GDSEHGGVGRRAE   TVSPPRLSPPAPSK RQT VAV E LAAKTEEQVPLLGLAET+S PS PTCAPV ATTVADPAYGETT GFIT SQGAALDDKAPTTASTSSRDTAQLLLLRDRAVLRERKRA+M+MSSRSSLLTMASPARA        ARF RQ R ARKALRREDVMSRGTSVLWRG GSNNGGTT VGKE
Sbjct:    3 RVSIKLTSAARRNARTPAEGAKAPAAPVPAATILRGPLVAHREGGKRTGNSDHGSDKDDYSFLEXXXXXXXXXLEDSSSSPTACPFKAAVEATELAQKAKDELCLAKLQAEKRKDTVGQKMRETDVAWIQQLSVKAMNAITAASNMTSGAAAAMYTASREDPKNQATGSAAAVTAXXXXXXXXXXXXX----QRRRWKRINRNVNASVATPPAGTSQPGERRTTTTAVMEVHTKRGINASGTMATAAKPRPARNASSDETCTGMAMEE--EQP----HSTESA-------------------------------------VACIGATPWAMPSAPAALPAPASAPAGDSDMAIVEDQACQMTAAAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSTESVVACIGATPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMTAAAALLAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAVVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASKSTVAEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQAQSAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSTAAEALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSTESAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASKSTAAEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSTESAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAASALVATAATPSTMPPXXXXXXXVGGISAXXXQRPCKXXXXXXXXXXKTAATWSMAPLLAALAVSGEQAGEQDGATGVQESKKEDEELGEGDIRLERKASIE-EAQGEPNRSRGLGDSEHGGVGRRAEHNATVSPPRLSPPAPSKTRQTAVAVAEPLAAKTEEQVPLLGLAETNSRPSHPTCAPVAATTVADPAYGETTKGFITFSQGAALDDKAPTTASTSSRDTAQLLLLRDRAVLRERKRAEMKMSSRSSLLTMASPARAXXXXXXXXARFSRQARAARKALRREDVMSRGTSVLWRGDGSNNGGTTTVGKE 1171
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BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: A0A6H5JJ84_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ84_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 1.510e-79
Identity = 164/228 (71.93%), Postives = 171/228 (75.00%), Query Frame = 1 
Query:  256 RVSIKLTSAARRNARKPTEVAKAPAVPVPAATILRGPSVAHRESGRRTGNSDHGSDKDDCSFLEDGEI------ESSSSSPTACPFKAAVEATKLVQKAKEELCLAKLVTEKRKDMVDEKLRDTDAAWVQQLSVKAMNAVTAASNMTSGAAAAMYTANREDPRNQATASTAAXXXXXXXXXXXXXXXXXXXXQRRRWKRINRNASTSAATPPAGTSQPGERGAATTAG 921
            RVSIKLTSAAR NAR   EVAKA A PVP ATILRGP VAHRESG+R GNSDHGSDKD                ESSSSSPTACPFKAAVE T+L QKA++ELCLA+LVTEKRKDMVDEK+RDTD  WVQQLSVKAMNAVTAASNMTSGAAA MYTANR DPRNQA  STAA                    QRRRWKRINRNA+ SAATPP GTSQPGERG  TTAG
Sbjct:   11 RVSIKLTSAARSNARTLAEVAKASAAPVPVATILRGPLVAHRESGKRNGNSDHGSDKDXXXXXXXXXXXXXXXXESSSSSPTACPFKAAVETTELAQKARDELCLAELVTEKRKDMVDEKMRDTDVTWVQQLSVKAMNAVTAASNMTSGAAAVMYTANRGDPRNQAMGSTAALTAAGTCSTSAPSSTP----QRRRWKRINRNANASAATPPTGTSQPGERGTTTTAG 234
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BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: A0A6H5KVT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT3_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.910e-75
Identity = 155/214 (72.43%), Postives = 165/214 (77.10%), Query Frame = 1 
Query:  256 RVSIKLTSAARRNARKPTEVAKAPAVPVPAATILRGPSVAHRESGRRTGNSDHGSDKDDCSFLEDG------EIESSSSSPTACPFKAAVEATKLVQKAKEELCLAKLVTEKRKDMVDEKLRDTDAAWVQQLSVKAMNAVTAASNMTSGAAAAMYTANREDPRNQATASTAAXXXXXXXXXXXXXXXXXXXXQRRRWKRINRNASTSAATPPAG 879
            RVSIKLTSAARRNAR P EVAKA A PVPA+TILRGP VAHRESG R  NSDHGSDKDD S LED       + E SSSSPTACP KAAVEAT+L Q A++ELCLA+LVTEKRKDMVDEK+RDTD AWVQQLSVKAMNAVTAASNMTSGAAA MYTANR DPR+QA  STAA                    QRRRW+RINRNA+ SAATPP G
Sbjct:   11 RVSIKLTSAARRNARTPAEVAKASAAPVPASTILRGPLVAHRESGMRNVNSDHGSDKDDYSSLEDXFTFDGDDFEGSSSSPTACPLKAAVEATELAQNARDELCLAELVTEKRKDMVDEKMRDTDVAWVQQLSVKAMNAVTAASNMTSGAAAVMYTANRGDPRSQAMGSTAAVTAAGTCSTSAPSRTP----QRRRWERINRNANASAATPPRG 220
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BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: D7FSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 6.420e-63
Identity = 129/161 (80.12%), Postives = 137/161 (85.09%), Query Frame = 1 
Query: 3160 MRMSSRSSLLTMASPARAAAVRTRTRARFCRQGRVARKALRREDVMSRGTSVLWRGGGSNNGGTTAVGKEVEEVRENRDDRKVTNAPNGAVEAAQTQSWSSSAEIVRRPQQQKQKQQ-ERLSTLIGMHRIVSDIRTVRRAYKTDAFRLRV*RTSASRQGEV 3639
            M+MSSRSSLLT+ SPARAAA RTRTRARF RQ R ARKALRREDVMSRGTSVLWRG GSNNGGTT  GKE EE R+NRDD KV N PNG+VEA+Q+QSWS SAEIV+RPQQ       ER STLIGM+RIVSDIRTVRRAYKTDAFRLRV RTSA RQGEV
Sbjct:    1 MKMSSRSSLLTITSPARAAAARTRTRARFSRQARAARKALRREDVMSRGTSVLWRGDGSNNGGTTTEGKEGEEARDNRDDFKVANTPNGSVEASQSQSWSLSAEIVQRPQQXXXXXXXERFSTLIGMNRIVSDIRTVRRAYKTDAFRLRVWRTSAWRQGEV 161
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Match: D7FSZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.530e-14
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = -2 
Query:  990 AAIPAAAAA-TTVGEPAEMSPLRCE*PA*TVVVSAGPAVGLMASVSLAGSTGC----CAIAAIANAASLSSEDTFLN 1205
            AAIPAAAAA TTVGEPAE SPLRCE PA TV VSAGPA+GLMA+VS+A   GC     A AA ANAASLSSED FL 
Sbjct:   78 AAIPAAAAAATTVGEPAETSPLRCEKPALTVSVSAGPAIGLMAAVSMAPGAGCVNVGAANAANANAASLSSEDAFLT 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11266.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L667_9PHAE1.590e-29871.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSZ5_ECTSI7.800e-13055.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ84_9PHAE1.510e-7971.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVT3_9PHAE3.910e-7572.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSZ2_ECTSI6.420e-6380.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSZ3_ECTSI3.530e-1474.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11266contigEcto-sp13_S_contig11266:346..5355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3639
Hectar predicted targeting categoryother localisation
Exons3
Cds size3528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462588.8996203-UTR-Ecto-sp13_S_contig11266:345..3751681462588.8996203-UTR-Ecto-sp13_S_contig11266:345..375Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11266 346..375 -
1681462588.9637132-UTR-Ecto-sp13_S_contig11266:5274..53551681462588.9637132-UTR-Ecto-sp13_S_contig11266:5274..5355Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11266 5275..5355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462588.907995-CDS-Ecto-sp13_S_contig11266:375..30651681462588.907995-CDS-Ecto-sp13_S_contig11266:375..3065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11266 376..3065 -
1681462588.9253776-CDS-Ecto-sp13_S_contig11266:3561..42231681462588.9253776-CDS-Ecto-sp13_S_contig11266:3561..4223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11266 3562..4223 -
1681462588.9454057-CDS-Ecto-sp13_S_contig11266:5098..52741681462588.9454057-CDS-Ecto-sp13_S_contig11266:5098..5274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11266 5099..5274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11266.1127.1prot_Ecto-sp13_S_contig11266.1127.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11266 376..5274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11266.1127.1

>prot_Ecto-sp13_S_contig11266.1127.1 ID=prot_Ecto-sp13_S_contig11266.1127.1|Name=mRNA_Ecto-sp13_S_contig11266.1127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1176bp
MDRVEDKVVVGKKGRMVMLEVTQKPQQQRQQQQQQQQQQQQQQKRHVPPS
LQEQPPTTRVSIKLTSAARRNARKPTEVAKAPAVPVPAATILRGPSVAHR
ESGRRTGNSDHGSDKDDCSFLEDGEIESSSSSPTACPFKAAVEATKLVQK
AKEELCLAKLVTEKRKDMVDEKLRDTDAAWVQQLSVKAMNAVTAASNMTS
GAAAAMYTANREDPRNQATASTAAVTAAVTAAGTCSTSAPSTTPQRRRWK
RINRNASTSAATPPAGTSQPGERGAATTAGMEVHKKRGINATGTMATAAM
PPAFRNVSSDESEAALAMAAMAQQPVLPARETEAMRPTAGPAETTTVQAG
YSHRKGDISAGSPTVVAAAAAGIAAIDSAPWRMPPAAAALPVTASAPSAG
TGMAMEVEEPHSTESAVACIGATPWVMPPAPAALPVPASAPAAVSEMAIV
EEKACQMTAAAALVAITSTPWALPPAPAALAVPAAVPAVGEIPVLDREQA
SKSTAAAPLFAMPTTPWAMPAAPAALPVPAAVPSVGGMSAMDREQTSKST
AAADVLAMPATASTMPPAPAALPAPAAVPAASAVSAMVENQARSTESAVV
AMPATPWTVSAAPAAVPVPASAPAGNLEMAMDEGQAFKTAAVSALVAITA
TPLAMPRATVAVPAVGGMSAMDEQRPCKTAAAAVSATAVETAAWSMAPLL
AALAVPGEHVGEQDGATGVQGSKNEEEEFEEGEIRLERKTSIEVTNRWIS
LGCTPAEAAAAFAPAKTGAAAAAAAQAAAAKVSKATTAKATKTAAATATA
VAAIAAVAVAPVAAAAAAAAAAAAKAKASSPATATFREPGALLASARASE
RTPTPSAAVLQTAKPSPAVGKTVDAPPMVESVEQEAQGEPNRSLGVGDSE
HGGVGRRAEFQDTVSPPRLSPPAPSKIRQTTVAVVESLAAKTEEQVPLLG
LAETSSSPSDPTCAPVTATTVADPAYGETTTGFITSSQGAALDDKAPTTA
STSSRDTAQLLLLRDRAVLRERKRAKMRMSSRSSLLTMASPARAAAVRTR
TRARFCRQGRVARKALRREDVMSRGTSVLWRGGGSNNGGTTAVGKEVEEV
RENRDDRKVTNAPNGAVEAAQTQSWSSSAEIVRRPQQQKQKQQERLSTLI
GMHRIVSDIRTVRRAYKTDAFRLRV*
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mRNA from alignment at Ecto-sp13_S_contig11266:346..5355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11266.1127.1 ID=mRNA_Ecto-sp13_S_contig11266.1127.1|Name=mRNA_Ecto-sp13_S_contig11266.1127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11266:346..5355- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACGGACTCACCGCCAGCCGCACGAGGCAGACCGAGCCCAGGCAACG
TGTGGCGGGGCAGGACGTGGGGAGGGAGAAGATGGACCGAGTGGAAGATA
AGGTCGTGGTGGGGAAGAAGGGGAGGATGGTCATGCTGGAAGTCACCCAG
AAGCCACAGCAACAACGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGAAGAGGCACGTGCCACCATCGCTGCAGGAGCAGCCGCCAA
CGACGAGGTGAGAAAAGCGTGAGAACACTGTTAACCACGCATCACATTTC
TTGGTTGAGACCGGTTGTTCTGTTGATGGCTGTGATGCATACACAAGACC
GCAGGTGCGTCGAAACTACGCAAGTCTTTCGGAAACACCGTCCAGATTGC
CCAGAGCGGTTGTGATCGATGAGTAAAATTTCGGTTTCTTTCCCGCCGAT
TCGTCCTTTTGCTTTGCCCTTTCCAAGCTGGCGCTTGTGCGCGAGCTACT
GTACTTGGAGCTGTAGATCGAGATGCCAGCCTCATCAAACGTTTGGTCTG
ATACCGGTTGATCGTTTGGGAGAAAATCCAGCCAGAACCCATTTGCTCGT
CCCATTTTCTACCAATTAACCACGGTCTTGCCGCCGTACCGTAACCACCC
CAACCCTGACGTCCTCCAGAAACACCGTTTCCCCCCTCCAAAGGGACACT
CGCTGCAACACGGCGAGTGCACCCTTTCTGCACAGATGTCCTTTCCTTTC
TGAGCCCAGATCAATGTCCCCATCTTTCCCAAAACTTCAAAACAATCATG
AGAAACTTCCAAAATGTGATGAACATTGACGCCAGCGATCCATGTTCCTC
ACTTGCACGTAGTGGTATGGAACCTTGAGTTCGAGCTGATAGGATGGGCA
CAACCTGCTCCGCTGCCTCTAGTGGCTTGCCATAATGTCCACGAAGATGG
GGTACTCTCTCAATCATTCTCCATTTTTTCTCGTGCTGCTGCGAGACTTA
CATAGATTCCAAAAACAAATACGGGAATGGTAAGGGAGGGATGCACCAAG
CTAACCGCCTTGACTGACTTCCCTGTGTGGTATAACCTTTGGTGCGGCAT
ATGCAACGTTCCCTGCACCTTGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGTAGGAACGCGAGGAAGCCAACTGAAGTTGCCAAGGCTC
CGGCCGTGCCCGTACCGGCGGCGACGATTCTGCGGGGCCCCTCGGTCGCG
CACCGGGAGAGCGGAAGGCGCACCGGCAACAGCGACCACGGGAGCGACAA
GGACGACTGCAGCTTTCTCGAGGACGGCGAGATCGAGAGCTCATCGAGCT
CACCAACGGCGTGCCCGTTCAAGGCTGCAGTAGAAGCAACAAAGCTTGTT
CAGAAGGCCAAGGAGGAGCTTTGTCTAGCGAAACTCGTAACGGAGAAGAG
GAAGGACATGGTTGATGAGAAATTGCGGGATACCGATGCGGCGTGGGTCC
AACAGCTTTCCGTCAAAGCCATGAACGCAGTCACTGCCGCATCGAACATG
ACTTCCGGTGCTGCTGCCGCTATGTATACGGCGAATCGCGAGGACCCCAG
AAATCAGGCGACGGCTTCAACGGCGGCGGTGACGGCGGCGGTGACGGCGG
CGGGAACGTGCTCGACGTCGGCCCCTTCCACTACGCCTCAACGGCGGAGA
TGGAAGCGCATCAACCGGAACGCCAGCACATCTGCCGCTACCCCCCCCGC
GGGAACTTCTCAGCCAGGAGAACGGGGGGCCGCCACCACAGCAGGTACTG
GGCCAGATATCACTCCGTTTTGGTGGAACACGTGGTACACACACTAACAT
GGGACAGGCAGTATTTCCGCCTGTCTGTGTGTTCGGCTTCTTGCCTGTTC
CCAGGGTCGTCGCCGAGACGCGTGGATTTCTTGCGATCACAAGAACAGTT
TGTTTTTGTCGCTGAAACAAGCCTTCCCCCAACGGCAATAGCGCCAGTAA
CGGCTTCCTATGAGTTCAGTGTGAGGAGATGGTGCAGACCGGCCATGTAA
CTGTAGAAGCAGCAGGATATCGTGTCGGCGTGGGTGAACCGCTGCCACCC
AAAAAACACTGGATGTCTTGTGGATATTGCTTCTGAACCCTTCATCAACA
GAAGAGGCATGCGTCCAGTGCTGAGCTGTAAAGTCTTAACTCTTGTCGTC
GAGCACGACTCTAACAAGTGCCTGTCTCCGCTCGCTCTCCGCCCTCTTGC
GCTTGTTTCACTACAAAACCTATCTCCATCCTGCCCTAAGGCATGGAAGT
GCACAAGAAACGCGGTATCAACGCCACCGGCACGATGGCCACCGCTGCCA
TGCCCCCTGCATTCAGAAACGTGTCCTCCGACGAAAGTGAGGCAGCATTG
GCGATGGCGGCAATGGCACAACAGCCAGTGCTGCCTGCCAGAGAGACGGA
GGCCATGAGGCCGACTGCTGGTCCAGCGGAAACTACGACCGTTCAAGCTG
GCTACTCGCACCGCAAGGGAGACATTTCAGCAGGCTCCCCAACAGTGGTG
GCGGCGGCAGCCGCAGGGATTGCAGCCATCGACTCAGCTCCCTGGCGTAT
GCCCCCCGCGGCGGCTGCTCTGCCTGTGACGGCATCTGCGCCTTCAGCCG
GCACGGGGATGGCGATGGAAGTGGAGGAGCCACATTCGACGGAGTCAGCG
GTGGCATGCATCGGTGCAACTCCCTGGGTCATGCCCCCCGCACCGGCTGC
TCTGCCCGTACCGGCATCTGCGCCGGCAGCCGTTTCGGAGATGGCGATCG
TCGAGGAGAAGGCTTGCCAGATGACGGCGGCGGCAGCCTTAGTAGCCATA
ACCTCAACTCCATGGGCTTTACCCCCAGCACCGGCTGCTCTGGCTGTGCC
GGCCGCTGTGCCTGCCGTCGGTGAAATACCGGTTTTGGATCGAGAGCAGG
CTAGCAAGTCGACGGCGGCGGCACCCTTATTCGCCATGCCCACAACTCCT
TGGGCCATGCCCGCTGCCCCAGCTGCTCTTCCCGTACCGGCAGCTGTACC
TTCCGTCGGTGGAATGTCGGCTATGGATCGAGAGCAGACTAGCAAGTCGA
CGGCGGCGGCAGACGTATTGGCCATGCCCGCAACTGCTTCGACTATGCCC
CCAGCCCCGGCTGCTCTGCCTGCGCCAGCCGCTGTACCTGCCGCCAGTGC
CGTCTCGGCGATGGTTGAGAACCAGGCACGTTCCACGGAATCAGCGGTAG
TAGCCATGCCCGCAACTCCATGGACTGTGTCCGCTGCCCCGGCTGCTGTG
CCCGTGCCGGCATCTGCGCCTGCGGGTAACTTGGAGATGGCGATGGATGA
GGGGCAGGCATTTAAGACGGCGGCCGTGTCGGCGTTGGTAGCCATAACAG
CTACTCCCTTGGCTATGCCCCGCGCGACAGTCGCTGTGCCTGCCGTCGGT
GGGATGTCGGCGATGGATGAGCAGCGGCCTTGTAAGACGGCGGCGGCGGC
GGTGTCGGCGACAGCGGTCGAAACCGCAGCATGGTCAATGGCCCCTCTAC
TGGCCGCTCTGGCTGTTCCGGGAGAGCACGTCGGTGAGCAGGATGGGGCG
ACAGGGGTGCAGGGAAGCAAGAATGAGGAGGAGGAGTTTGAAGAAGGAGA
GATTCGACTCGAGCGCAAGACTTCCATCGAGGTGACGAATAGGTGGATAT
CACTCGGTTGTACACCAGCAGAAGCTGCTGCTGCCTTTGCACCTGCAAAA
ACGGGAGCGGCGGCAGCGGCAGCAGCACAGGCAGCAGCTGCAAAAGTATC
AAAGGCAACAACTGCCAAAGCAACAAAGACAGCAGCAGCGACAGCAACAG
CAGTAGCAGCAATAGCAGCAGTAGCGGTGGCGCCAGTCGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAAAGGCGAAGGCGAGCTCGCCTGCGAC
GGCGACGTTTCGCGAGCCAGGGGCACTTCTGGCTAGCGCTCGAGCTTCAG
AGAGGACGCCGACACCCTCTGCGGCGGTCCTGCAGACGGCCAAACCAAGC
CCGGCCGTCGGAAAAACTGTTGATGCACCTCCGATGGTCGAGTCGGTTGA
ACAGGAAGCCCAGGGCGAGCCAAACCGATCCCTGGGCGTAGGCGACAGCG
AACATGGTGGCGTCGGCCGAAGGGCTGAATTCCAGGACACAGTATCTCCA
CCCAGGTTGTCACCCCCCGCCCCTTCAAAGATCCGCCAAACGACGGTAGC
AGTGGTCGAGTCGTTGGCGGCAAAGACCGAGGAACAAGTGCCGCTGTTGG
GTCTTGCTGAGACCTCCTCCAGCCCATCAGACCCCACGTGCGCACCAGTG
ACGGCGACGACGGTAGCGGATCCAGCCTACGGCGAGACTACCACAGGCTT
CATCACTTCTTCTCAGGGCGCTGCTCTTGACGACAAGGCCCCCACCACTG
CCTCCACCTCATCGCGGGATACCGCTCAGCTGCTGCTTCTGAGAGACAGA
GCGGTGCTGCGGGAACGGAAGAGGGCGAAGATGAGGATGTCGTCGAGATC
GTCTTTGTTGACCATGGCCTCCCCAGCCAGAGCAGCAGCGGTGAGGACGA
GGACCCGCGCTCGTTTCTGCCGGCAAGGCAGGGTCGCCCGCAAGGCGCTT
CGGCGAGAGGACGTGATGTCTCGCGGGACATCAGTGTTGTGGCGTGGCGG
CGGTAGCAACAACGGTGGAACGACTGCGGTGGGCAAGGAGGTGGAGGAGG
TAAGGGAGAACCGCGACGACAGAAAGGTCACCAACGCCCCTAACGGGGCG
GTGGAGGCCGCTCAGACCCAGTCCTGGTCGTCGTCCGCGGAGATCGTTCG
ACGACCGCAGCAGCAGAAGCAGAAGCAACAGGAGCGATTGTCGACCCTTA
TCGGAATGCACCGCATCGTGTCCGACATCCGGACGGTGAGAAGGGCCTAC
AAGACCGACGCGTTCCGCTTGAGGGTGTGACGAACGTCGGCTTCGCGGCA
AGGCGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11266:346..5355-

>mRNA_Ecto-sp13_S_contig11266.1127.1 ID=mRNA_Ecto-sp13_S_contig11266.1127.1|Name=mRNA_Ecto-sp13_S_contig11266.1127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11266:346..5355- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGAGTGGAAGATAAGGTCGTGGTGGGGAAGAAGGGGAGGATGGT
CATGCTGGAAGTCACCCAGAAGCCACAGCAACAACGGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGGCACGTGCCACCATCG
CTGCAGGAGCAGCCGCCAACGACGAGGGTGTCGATCAAGCTCACCTCGGC
AGCCCGTAGGAACGCGAGGAAGCCAACTGAAGTTGCCAAGGCTCCGGCCG
TGCCCGTACCGGCGGCGACGATTCTGCGGGGCCCCTCGGTCGCGCACCGG
GAGAGCGGAAGGCGCACCGGCAACAGCGACCACGGGAGCGACAAGGACGA
CTGCAGCTTTCTCGAGGACGGCGAGATCGAGAGCTCATCGAGCTCACCAA
CGGCGTGCCCGTTCAAGGCTGCAGTAGAAGCAACAAAGCTTGTTCAGAAG
GCCAAGGAGGAGCTTTGTCTAGCGAAACTCGTAACGGAGAAGAGGAAGGA
CATGGTTGATGAGAAATTGCGGGATACCGATGCGGCGTGGGTCCAACAGC
TTTCCGTCAAAGCCATGAACGCAGTCACTGCCGCATCGAACATGACTTCC
GGTGCTGCTGCCGCTATGTATACGGCGAATCGCGAGGACCCCAGAAATCA
GGCGACGGCTTCAACGGCGGCGGTGACGGCGGCGGTGACGGCGGCGGGAA
CGTGCTCGACGTCGGCCCCTTCCACTACGCCTCAACGGCGGAGATGGAAG
CGCATCAACCGGAACGCCAGCACATCTGCCGCTACCCCCCCCGCGGGAAC
TTCTCAGCCAGGAGAACGGGGGGCCGCCACCACAGCAGGCATGGAAGTGC
ACAAGAAACGCGGTATCAACGCCACCGGCACGATGGCCACCGCTGCCATG
CCCCCTGCATTCAGAAACGTGTCCTCCGACGAAAGTGAGGCAGCATTGGC
GATGGCGGCAATGGCACAACAGCCAGTGCTGCCTGCCAGAGAGACGGAGG
CCATGAGGCCGACTGCTGGTCCAGCGGAAACTACGACCGTTCAAGCTGGC
TACTCGCACCGCAAGGGAGACATTTCAGCAGGCTCCCCAACAGTGGTGGC
GGCGGCAGCCGCAGGGATTGCAGCCATCGACTCAGCTCCCTGGCGTATGC
CCCCCGCGGCGGCTGCTCTGCCTGTGACGGCATCTGCGCCTTCAGCCGGC
ACGGGGATGGCGATGGAAGTGGAGGAGCCACATTCGACGGAGTCAGCGGT
GGCATGCATCGGTGCAACTCCCTGGGTCATGCCCCCCGCACCGGCTGCTC
TGCCCGTACCGGCATCTGCGCCGGCAGCCGTTTCGGAGATGGCGATCGTC
GAGGAGAAGGCTTGCCAGATGACGGCGGCGGCAGCCTTAGTAGCCATAAC
CTCAACTCCATGGGCTTTACCCCCAGCACCGGCTGCTCTGGCTGTGCCGG
CCGCTGTGCCTGCCGTCGGTGAAATACCGGTTTTGGATCGAGAGCAGGCT
AGCAAGTCGACGGCGGCGGCACCCTTATTCGCCATGCCCACAACTCCTTG
GGCCATGCCCGCTGCCCCAGCTGCTCTTCCCGTACCGGCAGCTGTACCTT
CCGTCGGTGGAATGTCGGCTATGGATCGAGAGCAGACTAGCAAGTCGACG
GCGGCGGCAGACGTATTGGCCATGCCCGCAACTGCTTCGACTATGCCCCC
AGCCCCGGCTGCTCTGCCTGCGCCAGCCGCTGTACCTGCCGCCAGTGCCG
TCTCGGCGATGGTTGAGAACCAGGCACGTTCCACGGAATCAGCGGTAGTA
GCCATGCCCGCAACTCCATGGACTGTGTCCGCTGCCCCGGCTGCTGTGCC
CGTGCCGGCATCTGCGCCTGCGGGTAACTTGGAGATGGCGATGGATGAGG
GGCAGGCATTTAAGACGGCGGCCGTGTCGGCGTTGGTAGCCATAACAGCT
ACTCCCTTGGCTATGCCCCGCGCGACAGTCGCTGTGCCTGCCGTCGGTGG
GATGTCGGCGATGGATGAGCAGCGGCCTTGTAAGACGGCGGCGGCGGCGG
TGTCGGCGACAGCGGTCGAAACCGCAGCATGGTCAATGGCCCCTCTACTG
GCCGCTCTGGCTGTTCCGGGAGAGCACGTCGGTGAGCAGGATGGGGCGAC
AGGGGTGCAGGGAAGCAAGAATGAGGAGGAGGAGTTTGAAGAAGGAGAGA
TTCGACTCGAGCGCAAGACTTCCATCGAGGTGACGAATAGGTGGATATCA
CTCGGTTGTACACCAGCAGAAGCTGCTGCTGCCTTTGCACCTGCAAAAAC
GGGAGCGGCGGCAGCGGCAGCAGCACAGGCAGCAGCTGCAAAAGTATCAA
AGGCAACAACTGCCAAAGCAACAAAGACAGCAGCAGCGACAGCAACAGCA
GTAGCAGCAATAGCAGCAGTAGCGGTGGCGCCAGTCGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAAGGCGAAGGCGAGCTCGCCTGCGACGG
CGACGTTTCGCGAGCCAGGGGCACTTCTGGCTAGCGCTCGAGCTTCAGAG
AGGACGCCGACACCCTCTGCGGCGGTCCTGCAGACGGCCAAACCAAGCCC
GGCCGTCGGAAAAACTGTTGATGCACCTCCGATGGTCGAGTCGGTTGAAC
AGGAAGCCCAGGGCGAGCCAAACCGATCCCTGGGCGTAGGCGACAGCGAA
CATGGTGGCGTCGGCCGAAGGGCTGAATTCCAGGACACAGTATCTCCACC
CAGGTTGTCACCCCCCGCCCCTTCAAAGATCCGCCAAACGACGGTAGCAG
TGGTCGAGTCGTTGGCGGCAAAGACCGAGGAACAAGTGCCGCTGTTGGGT
CTTGCTGAGACCTCCTCCAGCCCATCAGACCCCACGTGCGCACCAGTGAC
GGCGACGACGGTAGCGGATCCAGCCTACGGCGAGACTACCACAGGCTTCA
TCACTTCTTCTCAGGGCGCTGCTCTTGACGACAAGGCCCCCACCACTGCC
TCCACCTCATCGCGGGATACCGCTCAGCTGCTGCTTCTGAGAGACAGAGC
GGTGCTGCGGGAACGGAAGAGGGCGAAGATGAGGATGTCGTCGAGATCGT
CTTTGTTGACCATGGCCTCCCCAGCCAGAGCAGCAGCGGTGAGGACGAGG
ACCCGCGCTCGTTTCTGCCGGCAAGGCAGGGTCGCCCGCAAGGCGCTTCG
GCGAGAGGACGTGATGTCTCGCGGGACATCAGTGTTGTGGCGTGGCGGCG
GTAGCAACAACGGTGGAACGACTGCGGTGGGCAAGGAGGTGGAGGAGGTA
AGGGAGAACCGCGACGACAGAAAGGTCACCAACGCCCCTAACGGGGCGGT
GGAGGCCGCTCAGACCCAGTCCTGGTCGTCGTCCGCGGAGATCGTTCGAC
GACCGCAGCAGCAGAAGCAGAAGCAACAGGAGCGATTGTCGACCCTTATC
GGAATGCACCGCATCGTGTCCGACATCCGGACGGTGAGAAGGGCCTACAA
GACCGACGCGTTCCGCTTGAGGGTGTGA
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