mRNA_Ecto-sp13_S_contig11263.1125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11263.1125.1
Unique NamemRNA_Ecto-sp13_S_contig11263.1125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11263.1125.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.670e-30
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    1 MVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASVRLEASRVELVRTVAALTVAVAQ 246
            MVAVREALTVISNAGPA AVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASVRLEASR ELVRTVAALT AV Q
Sbjct:  301 MVAVREALTVISNAGPAQAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASVRLEASRAELVRTVAALTAAVDQ 382
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BLAST of mRNA_Ecto-sp13_S_contig11263.1125.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.250e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 177
            MVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS
Sbjct:  126 MVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11263.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4L7_9PHAE2.670e-3095.12RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G207_ECTSI5.250e-22100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11263contigEcto-sp13_S_contig11263:1021..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_003410.1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462588.8105862-CDS-Ecto-sp13_S_contig11263:1020..12661681462588.8105862-CDS-Ecto-sp13_S_contig11263:1020..1266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11263 1021..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11263.1125.1prot_Ecto-sp13_S_contig11263.1125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11263 1021..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11263.1125.1

>prot_Ecto-sp13_S_contig11263.1125.1 ID=prot_Ecto-sp13_S_contig11263.1125.1|Name=mRNA_Ecto-sp13_S_contig11263.1125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAP
SVTMYAAASVRLEASRVELVRTVAALTVAVAQ
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mRNA from alignment at Ecto-sp13_S_contig11263:1021..1266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11263.1125.1 ID=mRNA_Ecto-sp13_S_contig11263.1125.1|Name=mRNA_Ecto-sp13_S_contig11263.1125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11263:1021..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCGTGCGCGAGGCGCTGACGGTGATCTCGAACGCGGGCCCGGC
CCCGGCCGTAGTGGCGGCGGCCGAGCCGGCGACGCTCGCGGCGAGGTCGA
CGCAGGAGGCCGTGTCGACGGTGCTGGCGGTTGTGCGGTCGACCGCGCCT
TCGGTGACCATGTACGCGGCGGCCTCGGTGAGGCTGGAGGCCTCGCGGGT
GGAGCTCGTGAGGACGGTGGCGGCCTTGACGGTCGCGGTGGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11263:1021..1266+

>mRNA_Ecto-sp13_S_contig11263.1125.1 ID=mRNA_Ecto-sp13_S_contig11263.1125.1|Name=mRNA_Ecto-sp13_S_contig11263.1125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11263:1021..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCGTGCGCGAGGCGCTGACGGTGATCTCGAACGCGGGCCCGGC
CCCGGCCGTAGTGGCGGCGGCCGAGCCGGCGACGCTCGCGGCGAGGTCGA
CGCAGGAGGCCGTGTCGACGGTGCTGGCGGTTGTGCGGTCGACCGCGCCT
TCGGTGACCATGTACGCGGCGGCCTCGGTGAGGCTGGAGGCCTCGCGGGT
GGAGCTCGTGAGGACGGTGGCGGCCTTGACGGTCGCGGTGGCCCAG
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