mRNA_Ecto-sp13_S_contig1126.1121.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1126.1121.1
Unique NamemRNA_Ecto-sp13_S_contig1126.1121.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1126.1121.1 vs. uniprot
Match: D7FX97_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX97_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.570e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 165
            MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG
Sbjct:    1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 55
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BLAST of mRNA_Ecto-sp13_S_contig1126.1121.1 vs. uniprot
Match: A0A835Z1Q2_9STRA (Phosphatase inhibitor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-11
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    4 GKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYH 162
            G+KSSKRCCIFHK+R F ESDS             + W++PKPGRP   Q+YH
Sbjct:   52 GRKSSKRCCIFHKQRKFGESDSEESSSDLDDEEREKYWSEPKPGRPNRGQVYH 104
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BLAST of mRNA_Ecto-sp13_S_contig1126.1121.1 vs. uniprot
Match: B7FNT7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNT7_PHATC)

HSP 1 Score: 46.6 bits (109), Expect = 8.390e-5
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAH-QLYH 162
            MG+KSSKRCCIFHK+R FDES +             R+ A+PK  +     Q YH
Sbjct:   84 MGRKSSKRCCIFHKQRPFDESSTDSSDQDGNDDRDKRKIARPKKSKEVPDFQRYH 138
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BLAST of mRNA_Ecto-sp13_S_contig1126.1121.1 vs. uniprot
Match: A0A7S1UFI5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFI5_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 8.640e-5
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYH 162
            M KKSSKRCCIFHK+R F ESDSXXXXXXXXXXX     A PK    K H+ YH
Sbjct:   91 MNKKSSKRCCIFHKQRRFGESDSXXXXXXXXXXXP----APPKNRNYKPHETYH 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1126.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX97_ECTSI4.570e-23100.00Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z1Q2_9STRA1.070e-1152.83Phosphatase inhibitor-domain-containing protein n=... [more]
B7FNT7_PHATC8.390e-545.45Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1UFI5_9STRA8.640e-568.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1126contigEcto-sp13_S_contig1126:6092..9434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-26_004070.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462588.5039265-CDS-Ecto-sp13_S_contig1126:6091..61131681462588.5039265-CDS-Ecto-sp13_S_contig1126:6091..6113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1126 6092..6113 +
1681462588.512988-CDS-Ecto-sp13_S_contig1126:9288..94341681462588.512988-CDS-Ecto-sp13_S_contig1126:9288..9434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1126 9289..9434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1126.1121.1prot_Ecto-sp13_S_contig1126.1121.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1126 6092..9434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1126.1121.1

>prot_Ecto-sp13_S_contig1126.1121.1 ID=prot_Ecto-sp13_S_contig1126.1121.1|Name=mRNA_Ecto-sp13_S_contig1126.1121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MGKKSSKRCCIFHKKRNFDESDSDESDSDADDEERERRWAQPKPGRPKAH
QLYHG*
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mRNA from alignment at Ecto-sp13_S_contig1126:6092..9434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1126.1121.1 ID=mRNA_Ecto-sp13_S_contig1126.1121.1|Name=mRNA_Ecto-sp13_S_contig1126.1121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1126:6092..9434+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAAGAAGAGCTCGAAGCGTGAGTGTTGCGTTGTGTTTCCAACGAC
CCGGCTGGCCGGGTTGAAGGTCAGCACATTTTTTTTCCGCGTCTTTTGAT
GCGACATCTGTAACAAACACAAATGGATGGCACCGTTGTGGGCGGGTAGT
TGTATTCGTGTAGAGCAGGTGCAGATTCGCCCCCTCTCCAGAACAACGAG
AATCTGTCCACGTCGAGAGCTCGGCGTACCCTTCGGTGACCCCCTGCGTT
CACCCACTGAAGTCCGCACACCGCGAGCTGCCTGCTACCCTTCCTTGCCC
GAGAAGAACCACACTACGGTTAGCCTACAATAGAGGCTGTTACAACCCAA
CGTCACCCAGCTTTGGTTCTTTGCGTGCGGAAATATGATGTCGCGGAGAA
GTTTCTCCGGCACAAGAATGCGTTCACCCTTTTTCTCCGCTGGTGACGTT
GTGTGGTACAGCCTGTACCTATGATAGATGTATGCTTTTCAAAGTGCTCC
TCCGCGTGGAACAAACCTCTCTCGGTCTCGGAGGTAAAAGTAACGCGATC
GAACGCCGCAGCAGGTGTCGAAAACCCGCCAGCGCCACAACAACAGGGTA
GGAGTTTAGAAACAATCGTGGCTGGTTGCACCTGCATCTAAGAATACCCC
GGGTCTACAAACCGCTGCTGCTGCCGTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGTTCT
CTCTGCCCAGTACCTTCATCTGTCCGTACTAATTAGTCTAACACTTGACG
GTGTCGATTCCCGTGGTCACAGGCTAACTTGCCCCCAAAAAAAATTGTAC
TCCTACGTAAATAACTAGGCAAAATCATTCTGTGTTCCCTGTTCCCTAGA
AGCGGAAATAGACGTCCGAAAAGACTGTTGCCGCTCCCGTTACTAGTGTG
TACATCCTTGCGAGTGCCGAGCGAGAAAGGGCTGGCTGACATCACGAGGA
GGCAGCTTTTTGCGAAGCAGCCTTGCAAAGTGTCACAACGGAACATCCCG
TGCGCTCATTTCGATATATTTGTATGTGCTTTGCGGGCGGTGTTTCTGTC
CATGGGTTCAAATGCAAAAACAACGAACGGCACACCACCACCGAGTCACT
GCGTCGCGGCCGAGAGAAACAAACTCGACCCCCCCCCCCCTCCCACTGAA
AGGGTGCCGTCATAAAGGTCATGACTAACAACGAATGAATTGAAAGAGCG
CCGAAGTTCCGTCGGCCTTCCTTCCTTCATGTGCTCTGTAGATACAACGG
CGTTGACTCGTATTCTAATGCGCTTTTTCACCTCCTTGCTATCCACCCGC
AAGCAGCACACAATCAGTGACGGGCCAGGATGTTGGGCGCTTGACTGCCG
TGTGTGTGTCGTCCCCATCTATTCTGAATGTCACTGGCCGGGTTGCTCGC
GCTTGCTGCCGTACGAGTTTCGTGAGCCTTGGATACACTTTTGTAAAAAC
TCCTTAAGACTACCCGATGTTGAACGTAGCAAGGCTAGGTTCCTCATGCG
AGCAAGGCTAGGTTGCTGAACCCCAACCAACCCTAACCCTATCCCTCACC
CACGGCCAACGCACAGCCTAGCGGCCGTGAACTGGGTTAGCATGTGGCGC
AGCCGCGTGCTCGGAATGCGGAACGGGGAGAGGTTGCTAGAGAGGAATCG
GCCGTTAGAACCAACGCCAAACAAAGCCCGACCTATCAGAAAGCGTTAGT
CCTAAAGATCAACTATCAATGTGTACACAGTACTGTGTTCGTCCCAATTT
ACTCTTGAATGTCCGTCTGTATGCCTAGCAGCATGTAGTTTCCGGGTGCA
CCGATGCGCCCGCCCGGGTCGCAACAGGAGGGAAGACCTCACTGGATGAT
TATTTTTGATAACTCCGCCTTCCTAGGCCGGTGCTGTGCGTAATTTTTCC
ACCGCGAGACGGCAGAATTATTCTTTTGCGGTTCCTTTCCCCGGTTGACC
GTGAAGCTTGAGTCGTATTTTTTTGCTGCGTGACGCAGGAGGCCTTCGAA
ACAATCCCAGTTTTGGTGTGACTGCGAGACGAGAGTCCAACCCACGGTTG
GTTGCCAACCACTGCTGCGGTATGACCGTGTATGACCAAGCTGTGTACTT
CGAAGTTCTTGGAGGTATTTGTTTTTCCGTTAAGTCGTATTTGTTGTAGC
ACGTGTTTTCTGTCCGTGGTCCGCGTCAGTCCTCTCAGCAAAATTGATCA
AGCAAACATATGGGATAAAGTACGCAACCCGTGCTTTGGGGTTAGGGTTA
CGGTTACCCTCGGGTAGCACCAATTTTACGCAAACATGCTGCGACGGCCA
CTCCTTGGTAAAAAGGTTGTTGTGACGACGGTGCCTTTACAAGAGGGTGC
TTGCCCAGCGGTTCCTGTGATCCACTTTCTCCTCCGGTTAGCGTCTTGCT
TGGTTCGGCCACGTCAAAATTGTTTAGAACTGATCACGAGCGAACACATG
GTGCGTGCGATCGGCCCAGCAGTGAGTATCTCAAGTATTTACCAGGCAGA
AAGACCTCGCACTCCCAGCAGTGAGTATCTCCAAGTCTTTACCAGGCAGA
AAGACCTCACACTCACTCCCCTTCAGATCGACCCCCGAATCGACCACAAC
TCTCGAGAAGGAACCACAGCACCTACCTACCATATTCGTCATGCTCAGCA
CGTGTGAAAAAAAGAAGCGTCGTGCTGAACTCGTCCGCGTGGATACATTT
CCCCGCATTTATTGCGTTTTTTTGTCCCCGTCTGCCTCCATGATGGTGCC
ACCCCCCCTCATGCCGCACCCATCTCCCCGCATCATTACGGCTGCTCTCT
CGCCTTCCCATGTCATCCTTGCGTAGTGAAGCAGGTTTACTACTGCAAAC
TCAGCGTATGACAACACACTTGTAAAACCTCTGTTTGCAATGGACGATGT
AAACCCCACGATGGACTGGCTGCCAGCCCAGCGAATGGCAACAGACATTT
AGTAATGCCCTAGAAATGACCGCGAGCTCAGCTGTCTTATGATAATGCAC
AACAACAAGATACTATTTTCCACAAACGACGGACAAACAGGTCGCTGTTT
TGACAACACACAACGACGAACAGGTTTGCTTCTTTCACCAAACACTTCCA
CGAAGAAAAACATTTCTCGACAAACGATGGATTAACCAAACCGACAGGTT
GCTGCATTTTTCACAAGAAGAGGAACTTCGACGAGAGCGACAGCGATGAG
AGCGACTCGGACGCGGACGACGAGGAGCGCGAGCGGCGCTGGGCGCAGCC
CAAGCCCGGCAGGCCAAAGGCGCACCAACTTTACCACGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1126:6092..9434+

>mRNA_Ecto-sp13_S_contig1126.1121.1 ID=mRNA_Ecto-sp13_S_contig1126.1121.1|Name=mRNA_Ecto-sp13_S_contig1126.1121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1126:6092..9434+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAAGAAGAGCTCGAAGCGTTGCTGCATTTTTCACAAGAAGAGGAA
CTTCGACGAGAGCGACAGCGATGAGAGCGACTCGGACGCGGACGACGAGG
AGCGCGAGCGGCGCTGGGCGCAGCCCAAGCCCGGCAGGCCAAAGGCGCAC
CAACTTTACCACGGATGA
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