mRNA_Ecto-sp13_S_contig11249.1111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11249.1111.1
Unique NamemRNA_Ecto-sp13_S_contig11249.1111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11249.1111.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.410e-62
Identity = 211/236 (89.41%), Postives = 213/236 (90.25%), Query Frame = 1 
Query:   19 GRRITRGTSLDSRMGSQSFADDDVMLDEAFGGQPAERTDDMLVEVDLSAIIADMEDGDEGXXXXXXGRGDAVATFMDMHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGLMATHRPQSDSGGEHPEDRSDSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGHEAEMGGHGVDGEEDVMDEEDEXXXXXXXXXXXXXXXXXXXLDDFDGGGDGDDDGHRDDEDMYVLG 726
            GRRITRGTS DSR+GS SFADDDVML  AFGGQPA RTDDMLVEVDLSAIIADMEDGDEG      GRGDAVATFMDMHD     XXXXXXXXXXXXXXXXXXXXXXXAGAGLMATHRPQSDSGGEH EDRSDS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGHEAEMGG GVD EEDVMDEED+XXXXXXXXXXXXXXXXXXX D FDGG DGDDDGHRDDEDMYVLG
Sbjct: 1840 GRRITRGTSRDSRLGSHSFADDDVMLXMAFGGQPAGRTDDMLVEVDLSAIIADMEDGDEGGVRH--GRGDAVATFMDMHDDEGDPXXXXXXXXXXXXXXXXXXXXXXXAGAGLMATHRPQSDSGGEHSEDRSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGHEAEMGGQGVDREEDVMDEEDDXXXXXXXXXXXXXXXXXXXXD-FDGGEDGDDDGHRDDEDMYVLG 2072
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11249.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6M1_9PHAE1.410e-6289.41UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11249contigEcto-sp13_S_contig11249:403..2948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size730
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionDomain of unknown function DUF4414
Ec32 orthologEc-00_007160.4
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462587.717015-CDS-Ecto-sp13_S_contig11249:402..5601681462587.717015-CDS-Ecto-sp13_S_contig11249:402..560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11249 403..560 -
1681462587.7252984-CDS-Ecto-sp13_S_contig11249:1012..13311681462587.7252984-CDS-Ecto-sp13_S_contig11249:1012..1331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11249 1013..1331 -
1681462587.7328856-CDS-Ecto-sp13_S_contig11249:2007..21571681462587.7328856-CDS-Ecto-sp13_S_contig11249:2007..2157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11249 2008..2157 -
1681462587.7404256-CDS-Ecto-sp13_S_contig11249:2846..29481681462587.7404256-CDS-Ecto-sp13_S_contig11249:2846..2948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11249 2847..2948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11249.1111.1prot_Ecto-sp13_S_contig11249.1111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11249 403..2948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11249.1111.1

>prot_Ecto-sp13_S_contig11249.1111.1 ID=prot_Ecto-sp13_S_contig11249.1111.1|Name=mRNA_Ecto-sp13_S_contig11249.1111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
GGGAGGGRRITRGTSLDSRMGSQSFADDDVMLDEAFGGQPAERTDDMLVE
VDLSAIIADMEDGDEGGGGGHHGRGDAVATFMDMHDDQGGPPPLMQASSS
DDNGMAAHGGAAGGAGAGLMATHRPQSDSGGEHPEDRSDSEDDGDSDDDD
SDGDSDDEEEEDDDSDDGDDDDGHGGHEAEMGGHGVDGEEDVMDEEDEEE
EDDEEGDEEELDEEEIDLDDFDGGGDGDDDGHRDDEDMYVLG*
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mRNA from alignment at Ecto-sp13_S_contig11249:403..2948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11249.1111.1 ID=mRNA_Ecto-sp13_S_contig11249.1111.1|Name=mRNA_Ecto-sp13_S_contig11249.1111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11249:403..2948- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGTGGCGCCGGCGGGGGACGCCGCATTACTCGTGGCACGTCGCTGGA
CTCTAGGATGGGCTCTCAGAGCTTCGCGGACGATGATGTCATGCTTGACG
AGGTGGGCGTTAAGGTTAAGACTCTTTAGACTCGATTGCGGCGGGGGGGG
GGGGGGGGGGGGGGTACTCATGGTTTGCGTGCCTTTGTTGTTAAGACCAC
CGACCACTCGTCCTCGAGAGGGCGAAGCGCGGGCGATGGACTGGGGGTCG
AGTTGTTCTGGTTAAGCAAGGTGGAGGTGGCGGTTCGGGGAAAGGCGCGG
GTGGTCGTTGTTTTTGCTGCCCCGTTGCTCCTGTGGTTGTCACATGAGCC
TGTAGCAAGAGTAAAGTGCCCCCTCCCCCCCTCCTTCCCCATCCCACGCC
GTCGCCCCCTTCCCCCCAGAAACCCAAAATGAATCCTACCCCAGGCGTGT
CCCCTCTGTTTAGTGCGGAGCAAGTAAACGCATCTCGTGTGTGTTTTCCT
CCCCCCTCCCCCATGATTGACCTAGAAAATCCACTCTGCACGGGTTACTT
GCAGGAGTCTTCTGTATGGAACTTAGTGTCCTTACTGTAAACGGTGTGTG
TGTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCC
CCCCCCCGCCCCCCCCCCCCCCGCCCCTCCGGGGCGCCCGCCGGCGCCGC
CCCCGCCGNNNNNNNNNNGGTGTGTGTTTGTCCCCCCCCCCCCCCCCCCT
CATCTGCGGGCGGGCCGCCTGCTGCTGTTGCCGGGGAACAGGCCTTCGGC
GGGCAGCCCGCGGAGAGGACGGACGACATGCTGGTAGAGGTGGACCTCAG
CGCCATCATCGCGGACATGGAGGACGGGGACGAGGGCGGAGGCGGGGGTC
ACCATGGCCGCGGAGACGCCGTCGCAACGTTCATGGACATGGTACGTTTG
TGTGTTTGGCATCGACCGCGCTAGCCGGCTCAAATACGTCAGTCTCGGCG
CGGCTGAAACAGAATATGTTGTCATTGGCCATTTGCGTGTGTACGGTGCT
CCGCCCCCACTACCACGACTCAGCGCACTTGCTTCGTATCGGTGCCGGTG
GTGTGAGGTGTTTTAGGTTTACTTCGGTCGCCTGGAAGGGCGCAGCAGTG
GTTCAGGCTTGTCCTTTTTTTTGTGTTGCTCATGTGGTTGCTCGTTGCGC
GAGGTTTTAGCGAGAAGCTATCATGGTGTATCATCGGCGTGAATAGTAGG
CACGGCACACACCCCAGCGCACCCTCTCGCTGACGCCGGTCATGATTGGG
CTCGTTTGTGTCGCTCCTCAGTGAGGGTCCCGCGGTATTTCGGATACGTG
CCAAGCGCATTCACCCGCACTATGGCGGGCACCCGCGCTGTTCACTCACC
TTCACTGACCTGAAGCACCTTGAATTAATCCCATCTGTTGCCAGCCAATT
TGCATCCGCACAACACGGGGCAACCTGCACTAATCAAGCGCACTATATCA
GCGGGGCACCCGCACGAATCAACCGCACTATTGCGGGCCCCTCACTGTAC
CACGTCCCCCATCCTCCCATCACATACCGTGCACATCTTTGGTGAACCAA
AACACCGCACCTCACAGCACGATGACCAGGGCGGCCCGCCTCCTCTCATG
CAGGCCTCCTCTTCCGACGATAACGGGATGGCTGCGCACGGCGGCGCCGC
CGGTGGCGCCGGCGCCGGCCTAATGGCCACCCACCGGCCGCAGTCCGACT
CCGGTGGAGAACATCCCGAGGACCGTTCCGACTCGGAGGATGATGGCGAC
TCGGATGACGACGATTCAGACGGGGATTCGGATGACGAGGAGGAGGAGGA
TGACGATTCCGACGATGGCGATGATGATGACGGGCATGGCGGGCACGAGG
CGGAGATGGGCGGGCACGGTGTGGACGGGGAAGAAGGTGTGCTAACCAGC
GGCCTTGGTTTTTTTGCCGTGGTGGTGTGGTTCCGTACCGCCCGCCTGGA
TGTGCTAGGGGGTGCGGGGGGGGGGGGGGGGGGGGGGGGTTCCTTTTTTT
CATACCGTTGTTTTTTTTTAACTTTTTTAAAAAAGTTGTTTTTTTTTTTC
CTTGTCCACCACTTTTTNNNNNNNNNNGGTGGAGGTGTTGTGTGGGGGGG
TGGGGGGGGGGGGGTGTGGTGGGGGGGGGGGGGGGGGGGGGGGCGTGCTC
ATGCTTTGCATACCGTAGCTTTTATTAGACCATTGTACAAAAGTAGTTGT
TTTGTTTCCCTGCTGCACACTTTTGCACGTGCAACACATTGTACGCTTCT
TGAGCTCGGGTGTGTGGTCATGCTCGTGCCTTGTTGCTCTTGGGATCGTT
GTTCCTACGACACCGTTTGTAATTTACTCTGCGAGAAGACGTGATGGACG
AGGAGGACGAGGAGGAGGAAGACGACGAGGAGGGCGACGAGGAAGAGCTG
GACGAAGAGGAGATCGATCTGGACGACTTCGACGGCGGCGGGGACGGCGA
TGACGACGGACACCGAGACGATGAGGACATGTACGTTCTTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11249:403..2948-

>mRNA_Ecto-sp13_S_contig11249.1111.1 ID=mRNA_Ecto-sp13_S_contig11249.1111.1|Name=mRNA_Ecto-sp13_S_contig11249.1111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11249:403..2948- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGTGGCGCCGGCGGGGGACGCCGCATTACTCGTGGCACGTCGCTGGA
CTCTAGGATGGGCTCTCAGAGCTTCGCGGACGATGATGTCATGCTTGACG
AGGCCTTCGGCGGGCAGCCCGCGGAGAGGACGGACGACATGCTGGTAGAG
GTGGACCTCAGCGCCATCATCGCGGACATGGAGGACGGGGACGAGGGCGG
AGGCGGGGGTCACCATGGCCGCGGAGACGCCGTCGCAACGTTCATGGACA
TGCACGATGACCAGGGCGGCCCGCCTCCTCTCATGCAGGCCTCCTCTTCC
GACGATAACGGGATGGCTGCGCACGGCGGCGCCGCCGGTGGCGCCGGCGC
CGGCCTAATGGCCACCCACCGGCCGCAGTCCGACTCCGGTGGAGAACATC
CCGAGGACCGTTCCGACTCGGAGGATGATGGCGACTCGGATGACGACGAT
TCAGACGGGGATTCGGATGACGAGGAGGAGGAGGATGACGATTCCGACGA
TGGCGATGATGATGACGGGCATGGCGGGCACGAGGCGGAGATGGGCGGGC
ACGGTGTGGACGGGGAAGAAGACGTGATGGACGAGGAGGACGAGGAGGAG
GAAGACGACGAGGAGGGCGACGAGGAAGAGCTGGACGAAGAGGAGATCGA
TCTGGACGACTTCGACGGCGGCGGGGACGGCGATGACGACGGACACCGAG
ACGATGAGGACATGTACGTTCTTGGGTGA
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