mRNA_Ecto-sp13_S_contig11248.1110.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig11248.1110.1
Unique Name	mRNA_Ecto-sp13_S_contig11248.1110.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: A0A6H5KM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 8.310e-59
Identity = 92/119 (77.31%), Postives = 97/119 (81.51%), Query Frame = 1

Query:    1 MHCRSLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQ------------------VVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            MHC SLRRSITTG+PCMTQDGG+ESTVHVDVEDHKVDG+PIRIFDCAGQ                  +VYYGLLQ FLTP AVYLLVWDAAKAS+M GLNLEDLAIAPWLRYLTFRVPD
Sbjct:    1 MHCLSLRRSITTGKPCMTQDGGLESTVHVDVEDHKVDGHPIRIFDCAGQSYAPLDVSVIPHVDHCRQIVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPD 119

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.070e-54
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            SLRRSITTG PCMTQ+GGVESTVHVDVEDHKVDG+PIRIFDCAGQVVYYGLLQ FLTP AVYLLVWDAAKAS+M GLNLEDLAIAPWLRYLTFRVPD
Sbjct:  556 SLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPD 652

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.430e-53
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            SLRRSITTG PCMTQ+GGVESTVHVDVEDHKVDG+PIRIFDCAGQVVYYGLLQ FLTP AVYLLVWDAAKAS+M GLNLEDLAIAPWLRYLTFRVP+
Sbjct:  463 SLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPN 559

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.420e-50
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            SLRRSI TG+PCMT+ GG ESTVHVDVEDH +DG+PIR+FDCAGQVVYYGLLQ FLTP AVYLLVWDAAKAS+M+GLNLEDLAIAPWLR+LTFRVPD
Sbjct:  391 SLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGHPIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLAIAPWLRHLTFRVPD 487

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.040e-49
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 1

Query:   19 RRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            + SI TGRPCMT+  GVESTVHVDVEDH+VDG+PIR+FDCAGQVVYYGLLQ FLTP AVY+LVWDAAKAS+M+GLNLEDL IAPWLRYLTFRVPD
Sbjct:  103 KTSIKTGRPCMTRGCGVESTVHVDVEDHEVDGHPIRVFDCAGQVVYYGLLQLFLTPRAVYMLVWDAAKASEMEGLNLEDLGIAPWLRYLTFRVPD 197

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.530e-43
Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = 1

Query:   19 RRSITTGRPCMTQDGGVESTVHVDVEDHKVD-------GNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            + SI  G+PCMT+ GGV+STVHVDVEDH +D       G+PIRIFDCAGQ  YYGLLQ FLTP AVYLLVWDA KAS+M  LNLEDLAIAPWLR +TFRVPD
Sbjct:  247 KTSIKAGKPCMTRGGGVDSTVHVDVEDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAPWLRQMTFRVPD 348

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.300e-43
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVD-------GNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            SLR SI  G+PCMT+ GGV+STVHVDV+DH +D       G+PIRIFDCAGQ  YYGLLQ FLTP AVYLLVWDA KAS+M  LNLEDLAIAPWLR +TFRVPD
Sbjct:   83 SLRCSIKAGKPCMTRGGGVDSTVHVDVQDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAPWLRQMTFRVPD 186

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: A0A6H5KZA7_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.490e-36
Identity = 85/183 (46.45%), Postives = 89/183 (48.63%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQ--------------------------------------------------------------------------------------VVYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVPD 303
            SLRRSITTG+PCMT+D GVESTVHV+VEDHKVDG PIRIFDCAGQ                                                                                      VVYYGLLQ FLTP AVYLLVWD AKAS+M GLNLEDLAIAP LR LTFRVPD
Sbjct:   50 SLRRSITTGKPCMTRDSGVESTVHVNVEDHKVDGRPIRIFDCAGQAVKTWLSVEDDPEVLEEEIAMELQAVDEQLAGVTLDDDVPSEEEDDDGMYPVILHPVAQFTLFDTMFQSSAPLQVSVLPHVDHCRQVVYYGLLQQFLTPRAVYLLVWDTAKASEMNGLNLEDLAIAPRLRCLTFRVPD 232

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: D7FM75_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.020e-25
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWD--AAKASKMKGLN--LEDLAIAPWLRYLTFRVP 300
            SLR+SI  G+   T++ G ESTVH+DVEDH++DG PIRIFDCAGQV Y GLLQ FLTP  ++LLV D  +   +   G +  LEDL    W+R L+FRVP
Sbjct:  382 SLRQSIVAGKARPTRNHGGESTVHIDVEDHELDGRPIRIFDCAGQVAYTGLLQLFLTPQVIHLLVVDMPSVVGNIENGTSNPLEDLGALRWVRSLSFRVP 481

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BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.180e-20
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1

Query:   13 SLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQVVYYGLLQFFLTPHAVYLLVWDAAKASKMKGL------------NLEDLAIAPWLRYLTFRVPD 303
            SLR+S+ TGRP  T  G  ESTV +DVE   V+G  +R++DCAGQV Y GLLQ FL+P AV LLV D     +  G              L++L +  WLR L+FR+PD
Sbjct:  299 SLRQSLRTGRPTPTS-GSEESTVQIDVEQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPD 406

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11248.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KM38_9PHAE	8.310e-59	77.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FX69_ECTSI	3.070e-54	92.78	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FX56_ECTSI	1.430e-53	91.75	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FJV1_ECTSI	2.420e-50	85.57	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5JSC0_9PHAE	4.040e-49	84.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQZ5_9PHAE	1.530e-43	72.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRW5_9PHAE	5.300e-43	73.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZA7_9PHAE	1.490e-36	46.45	G domain-containing protein n=1 Tax=Ectocarpus sp....	[more]
D7FM75_ECTSI	3.020e-25	56.00	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FL98_ECTSI	1.180e-20	46.79	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11248	contig	Ecto-sp13_S_contig11248:1463..2309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	191.8
Seed ortholog evalue	1.5e-46
Seed eggNOG ortholog	2880.D7FX69
Model size	305
KEGG ko	ko:K04730,ko:K04733
KEGG Pathway	ko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG Module	M00686
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons	2
EggNOG free text desc.	protein serine/threonine kinase activity
EggNOG OGs	2QQYD@2759,COG4886@1
EC	2.7.11.1
Cds size	303
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462587.6730545-CDS-Ecto-sp13_S_contig11248:1462..1609	1681462587.6730545-CDS-Ecto-sp13_S_contig11248:1462..1609	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11248 1463..1609 +
1681462587.6871614-CDS-Ecto-sp13_S_contig11248:2153..2309	1681462587.6871614-CDS-Ecto-sp13_S_contig11248:2153..2309	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11248 2154..2309 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11248.1110.1	prot_Ecto-sp13_S_contig11248.1110.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig11248 1463..2309 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig11248:1463..2309+
coding sequence from alignment at Ecto-sp13_S_contig11248:1463..2309+

protein sequence of mRNA_Ecto-sp13_S_contig11248.1110.1

>prot_Ecto-sp13_S_contig11248.1110.1 ID=prot_Ecto-sp13_S_contig11248.1110.1|Name=mRNA_Ecto-sp13_S_contig11248.1110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MHCRSLRRSITTGRPCMTQDGGVESTVHVDVEDHKVDGNPIRIFDCAGQV
VYYGLLQFFLTPHAVYLLVWDAAKASKMKGLNLEDLAIAPWLRYLTFRVP
D

mRNA from alignment at Ecto-sp13_S_contig11248:1463..2309+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig11248.1110.1 ID=mRNA_Ecto-sp13_S_contig11248.1110.1|Name=mRNA_Ecto-sp13_S_contig11248.1110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11248:1463..2309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTGCCGCAGTTTGCGGCGCAGCATCACGACCGGGAGGCCGTGTAT
GACACAAGACGGTGGTGTGGAAAGCACTGTCCACGTGGATGTGGAAGACC
ATAAAGTCGATGGTAATCCAATTCGGATATTTGATTGTGCCGGTCAGGTG
AGACCCATTCTTTTCCTTGTACACGCGTGCGTTGAACCAGTCAGCACGCT
TGCGTGGTGGGTCGGTGTACTTTTGATTTGACGTTCTGTGGCAATCATCG
AGGCCGAGGCTGGAGATCGAGATCGTTTCATTTTGTCGTGAGCAGCTTCC
AACCTTAGTTTCCAGCTATTCGCATGGACGTGAAGTGCGAGTACAGGACG
GGTTTTACCTACTGTAGCTTTCAAGTCCCAGTCCGCGCGGGCGCATGGCC
ATTGATATTCGTCAGCGTACATTATCTTATTGCGATGTCGGCTTGTCTAG
TTTTCTTCATCGTTTTTCAGAAGCATGCAGCCGGCGGGTGACATCGTCCG
TCCTTCGTCGGATCATTCCTCGGTCAGTGTCATTGCGATACGGACTTCAC
ACTGTCCTGGACCCCGGCAGGGAACTAGCACGTATCGTATGCTCCTGCAC
CCTGTTACCCAATTCACTTCCTTCGACACCATGTATCAGTCATGTGCGCC
CCTCAACGTGTCTGTGATCTCCCACCTTGACCACTGGACAGGTTGTCTAC
TACGGACTGCTCCAGTTCTTTCTCACCCCTCATGCCGTGTACCTGTTGGT
ATGGGATGCGGCGAAAGCCAGCAAGATGAAGGGCTTGAACCTTGAAGACC
TTGCCATTGCCCCCTGGCTACGTTACTTGACTTTCCGTGTGCCGGAT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11248:1463..2309+

>mRNA_Ecto-sp13_S_contig11248.1110.1 ID=mRNA_Ecto-sp13_S_contig11248.1110.1|Name=mRNA_Ecto-sp13_S_contig11248.1110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11248:1463..2309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTGCCGCAGTTTGCGGCGCAGCATCACGACCGGGAGGCCGTGTAT
GACACAAGACGGTGGTGTGGAAAGCACTGTCCACGTGGATGTGGAAGACC
ATAAAGTCGATGGTAATCCAATTCGGATATTTGATTGTGCCGGTCAGGTT
GTCTACTACGGACTGCTCCAGTTCTTTCTCACCCCTCATGCCGTGTACCT
GTTGGTATGGGATGCGGCGAAAGCCAGCAAGATGAAGGGCTTGAACCTTG
AAGACCTTGCCATTGCCCCCTGGCTACGTTACTTGACTTTCCGTGTGCCG
GAT