mRNA_Ecto-sp13_S_contig11245.1107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11245.1107.1
Unique NamemRNA_Ecto-sp13_S_contig11245.1107.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 506 bits (1303), Expect = 2.550e-162
Identity = 262/269 (97.40%), Postives = 265/269 (98.51%), Query Frame = 1
Query:    1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQPAPV 807
            TSFLPAERTAREGKVTRLSTPLAEAG GGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHA+ADMFKELMKNNA VDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNV+R VDTIAELSQ SEEQLRPLLGEGNAAKL+KFFRQPAPV
Sbjct:  952 TSFLPAERTAREGKVTRLSTPLAEAGNGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVLRGVDTIAELSQLSEEQLRPLLGEGNAAKLYKFFRQPAPV 1220          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 2.250e-110
Identity = 210/287 (73.17%), Postives = 218/287 (75.96%), Query Frame = 1
Query:    1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLT------------------LLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQPAPV 807
            TSFLPAERTAREGKVTRLSTPLAEAGKG SSGSSR+GGRRKAQA LRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK     G         LT   S +                      LH       +     A   + +ELMKNNA VDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV        +REVDTIAELSQ SEEQLRPLLG+ NAAKL+KFFRQPAPV
Sbjct:  861 TSFLPAERTAREGKVTRLSTPLAEAGKGSSSGSSRKGGRRKAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK----FGDPSFPPSFSLTRALSAINPHHAGFLFAGVGGPGLRDQADLHHIAAYASYPPLPSAPHPVVQELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV--------LREVDTIAELSQLSEEQLRPLLGDVNAAKLYKFFRQPAPV 1135          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A7S3L7V4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7V4_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.280e-65
Identity = 118/234 (50.43%), Postives = 155/234 (66.24%), Query Frame = 1
Query:  142 VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGG--------------GGEDDQGTGDDA--SAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
            + VD+REFRS LP++LHQ G  L P+ + VGD+VL+   CVERKS+SDLF S +SGRLY Q E+M +HYK P LLIEF+P K+FCL  S +L  EI+  S  S+L+LLT+HFP+LRILWS+  H T  +FK+L  N+  VDV KA   G               GGE+ +   D+   SA+E+L+RLPGVNV+  R ++ EVDT+AEL+  S E+LR + G     KLF FF Q
Sbjct:    8 IAVDVREFRSALPSILHQGGMRLAPVTLTVGDFVLSNVHCVERKSISDLFGSFASGRLYTQAESMCRHYKAPCLLIEFDPSKSFCLQNSSELGVEIRADSACSKLSLLTMHFPKLRILWSRGPHETLKIFKDLKMNHEEVDVEKAMEIGRNESVEALLRADKSKGGEEGEEEEDEINESAREMLLRLPGVNVHAARRIMEEVDTLAELALLSREELRKIAGPIVGQKLFTFFHQ 241          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.170e-64
Identity = 121/230 (52.61%), Postives = 163/230 (70.87%), Query Frame = 1
Query:  115 RRKAQA-PLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKE--LLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
            RR+A+A P   VVD+REFRS LP+LLH +GF L PL IAVGDYVL+P++CVERKS++DLF S +SGRL+NQ +AM + Y+ PVLLIEF+ ++AF L G G+L+S+IK+ +I S++ LLT+HFPQLR+LWS+S HAT  +F+ LM+N A VD A A AAG       G  D  SA    LL+RLPGV   NFR ++R   ++A ++  S  QL   +G   A +L+ F R+
Sbjct:  162 RRRARAGPPTAVVDVREFRSALPSLLHARGFRLAPLTIAVGDYVLSPELCVERKSVADLFSSFASGRLWNQADAMARWYRKPVLLIEFSAERAFGLQGGGELSSDIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAGARA----GAADSNSAARRCLLLRLPGVTASNFRALMRAGGSVAGVAALSLPQLTAAMGRVGARQLYNFVRE 387          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.120e-64
Identity = 123/216 (56.94%), Postives = 158/216 (73.15%), Query Frame = 1
Query:  130 APLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGG-GEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAK 774
            A  RVVVD+REFRS LPNLLH  G ++VPL +AVGD+VLTP++ +ERKS++DLF S  SGRLY QVE+ML+ YK   LLIEF  DKAF L   GD+T +I++T+I S+L LLTLHFP LRILWS++ H T  +FK L   NA VDV KA  AGGG GE+D   G   +A++LL++LPGV V NFR++++ VD +A LS+ S  +L P+L    AAK
Sbjct:  902 ACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGGTGEEDSEAGRHLTAQDLLLKLPGVTVSNFRSIMKRVDNLAALSRMSVAELHPILESEAAAK 1117          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A498LUB6_LABRO (DNA repair endonuclease XPF n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LUB6_LABRO)

HSP 1 Score: 219 bits (558), Expect = 4.440e-63
Identity = 119/269 (44.24%), Postives = 172/269 (63.94%), Query Frame = 1
Query:   10 LPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEG-NAAKLFKFFRQPAPV 807
            +P ER  RE   T L    +      ++ + + GGR + + P R++VD+REFRS LP+LLHQ+G ++ P+ + VGDY+LT +ICVERKS+SDL  S+ SGRLY Q  +M + Y+ PVLLIEF+P K+F L+   D   EI  + ITS+LTLLTLHFP+LR+LW  S + TA++F+EL +     D A AQA     E    + D  +    + L+R+PGVNV NF+++I+    +A+L  FS+E+L  +LG   NA +L++F   P  V
Sbjct:    3 VPEEREGRED--TNLDLVRSHEPASATTDTRKAGGREEVKEPQRIIVDMREFRSELPSLLHQRGLDIDPVTLEVGDYILTSEICVERKSVSDLIGSLQSGRLYTQCLSMSRFYRRPVLLIEFDPAKSFSLVARSDFRQEISASDITSKLTLLTLHFPRLRLLWCPSPYVTAELFQELKQGRPEPDAATAQAVTAESETVMESADLYNPGPYDFLLRMPGVNVKNFKSLIKHASCLADLLTFSQEKLSEILGSSSNARQLYEFLHNPMNV 269          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A8J9TMD7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TMD7_PHATR)

HSP 1 Score: 223 bits (569), Expect = 8.260e-63
Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1
Query:  100 SRRGGRRKAQAPLR--VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQ--------GTGDDA---SAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
            SRRG  ++ ++  R  + VD+REFRS LP++LHQ G  L P+ + VGD+VL+   CVERKS+SDLF S +SGRLY Q EAM KHYK P LLIEF+P K+FCL  S +L  EI+  S+ S++ LLT+HFPQLRILWS+S H T  +F+EL  N+  VDV KA   G     D           G+D     A+++L+RLPGVNV++ R +++E D++AEL++ S ++LR + G     KLF FFRQ
Sbjct:  181 SRRGRGKEDRSKERRDIAVDVREFRSALPSILHQGGMRLAPVTLTVGDFVLSNVHCVERKSISDLFGSFASGRLYTQAEAMSKHYKCPCLLIEFDPTKSFCLQNSNELGVEIRTESVCSKIALLTMHFPQLRILWSRSPHETLRIFRELKTNHDEVDVEKAIDIGRNESPDALLQLPAGLAEGEDEINEMARDMLLRLPGVNVHSARRIMQECDSLAELAEMSRDELRRIAGPVTGQKLFAFFRQ 425          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A6U2T7W2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2T7W2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 7.860e-61
Identity = 114/228 (50.00%), Postives = 153/228 (67.11%), Query Frame = 1
Query:  142 VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAG----------GGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
            +VVD+REFRS LP++LHQQ   L P+ + VGD+VL+P  CVERKS+SDLF S +SGRL+ Q EAM KHYK P LLIEF+P+K+F L    +L S+IK  SI S+++LL +HFP+LRILWS+S + T  +FK L  N+   DV KA   G          GGGE       + +A+++L+RLPG+N  N R +I   D+IAEL++ S + L+ LLG     KLF FFR+
Sbjct:  141 IVVDVREFRSALPSILHQQEMRLAPVTLTVGDFVLSPVHCVERKSISDLFGSFASGRLHTQAEAMSKHYKCPCLLIEFDPEKSFSLQNVNELGSDIKQDSICSKMSLLLMHFPRLRILWSRSPYETVKIFKSLKVNHGEPDVEKAVEIGSNESIDNLIIGGGEVTDEDEINEAARDMLLRLPGINRNNARRIIDRCDSIAELAEMSRDDLKELLGPLTGQKLFTFFRK 368          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A1V9ZKY2_9STRA (DNA repair endonuclease XPF n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKY2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.430e-60
Identity = 114/231 (49.35%), Postives = 162/231 (70.13%), Query Frame = 1
Query:  100 SRRGGRRKAQ-APLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFF 789
            +R GGR K      RVVVD+REFRS LP++LH++G  L P+ + VGDY+L+ Q+CVERKS+SDLF S+++GRL+NQ E M +HY+ P+LLIEFNP+K F L   G++T++IK +SITS+L+LL LHFPQLR LWSKS  AT ++FK++ K +   DV  A A G     +  +  + +A ++L +LPG+  +N+R V   V  +A+LS+ +   L PL+G  NA KL +FF
Sbjct:  596 TRTGGRAKIHLVSTRVVVDVREFRSALPSMLHREGIVLHPVTLEVGDYILSSQMCVERKSISDLFGSLNNGRLFNQAEMMTRHYQTPLLLIEFNPEKPFALQEVGEITTDIKHSSITSKLSLLVLHFPQLRFLWSKSPQATVELFKQVKKGHDDPDVEAAVAVGSAAGANSSSFYNMNAVDVLRKLPGITAHNYRKVAAHVTNLADLSKMAVADLEPLVGPTNARKLHRFF 826          
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: UPI001CF6F95B (DNA repair endonuclease XPF n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6F95B)

HSP 1 Score: 226 bits (576), Expect = 3.560e-60
Identity = 126/276 (45.65%), Postives = 177/276 (64.13%), Query Frame = 1
Query:    1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKL-FKFFRQ----PAPV 807
            T  +P ER  RE     L+  L  A    ++ + + GG+ + + P RV+VD+REFRS LP+LLH++G ++ P+ + VGDY+LTP+ CVERKS+SDL  S+ SGRLYNQ  +M ++Y+ PVLLIEF+P K F L    D   EI    I+S+LTLLTLHFP+LRILW  S HATAD+F EL K     D A AQA     +    + D  +    + L+++PGVN+ N+R +IR  D++A+L +FS+++L  +LG  N AKL ++F       PAPV
Sbjct:  618 TMVIPEEREGREDTNLDLARNLEPAN--ATTNTRKAGGQEQPKEPSRVIVDMREFRSELPSLLHRRGLDIDPITLEVGDYILTPETCVERKSVSDLIGSLQSGRLYNQCLSMTRYYRKPVLLIEFDPAKPFSLTARTDFRHEISSNDISSKLTLLTLHFPRLRILWCPSPHATADLFLELKKGRLEPDAAAAQAVTAESDMVTESADLYNPGPYDFLLKMPGVNIKNYRALIRNADSLADLVKFSQDKLAEILGNANNAKLLYEFLHNDADVPAPV 891          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE2.550e-16297.40ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI2.250e-11073.17ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3L7V4_9STRA4.280e-6550.43Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A836CHN3_9STRA2.170e-6452.61Restriction endonuclease type II-like protein n=1 ... [more]
A0A4D9D5Y9_9STRA5.120e-6456.94ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A498LUB6_LABRO4.440e-6344.24DNA repair endonuclease XPF n=1 Tax=Labeo rohita T... [more]
A0A8J9TMD7_PHATR8.260e-6349.39Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A6U2T7W2_9STRA7.860e-6150.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1V9ZKY2_9STRA2.430e-6049.35DNA repair endonuclease XPF n=1 Tax=Achlya hypogyn... [more]
UPI001CF6F95B3.560e-6045.65DNA repair endonuclease XPF n=2 Tax=Thunnus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11245contigEcto-sp13_S_contig11245:830..5339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1912
Hectar predicted targeting categoryother localisation
Exons6
Cds size306
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11245.1107.1prot_Ecto-sp13_S_contig11245.1107.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11245 873..1178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462587.4607704-UTR-Ecto-sp13_S_contig11245:829..8721681462587.4607704-UTR-Ecto-sp13_S_contig11245:829..872Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 830..872 -
1681462587.4781096-UTR-Ecto-sp13_S_contig11245:1178..20571681462587.4781096-UTR-Ecto-sp13_S_contig11245:1178..2057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 1179..2057 -
1681462587.488006-UTR-Ecto-sp13_S_contig11245:2779..29601681462587.488006-UTR-Ecto-sp13_S_contig11245:2779..2960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 2780..2960 -
1681462587.502204-UTR-Ecto-sp13_S_contig11245:3491..36071681462587.502204-UTR-Ecto-sp13_S_contig11245:3491..3607Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 3492..3607 -
1681462587.511879-UTR-Ecto-sp13_S_contig11245:4147..42101681462587.511879-UTR-Ecto-sp13_S_contig11245:4147..4210Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 4148..4210 -
1681462587.521117-UTR-Ecto-sp13_S_contig11245:4850..49791681462587.521117-UTR-Ecto-sp13_S_contig11245:4850..4979Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 4851..4979 -
1681462587.5308497-UTR-Ecto-sp13_S_contig11245:5144..53391681462587.5308497-UTR-Ecto-sp13_S_contig11245:5144..5339Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11245 5145..5339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462587.4696674-CDS-Ecto-sp13_S_contig11245:872..11781681462587.4696674-CDS-Ecto-sp13_S_contig11245:872..1178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11245 873..1178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11245.1107.1

>prot_Ecto-sp13_S_contig11245.1107.1 ID=prot_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MLSSGAGKKMAPVATAKQATGPPLGVTSKRWSIVTRSGFSLGGESSSLPA
ATRAQMAHGCTAAKSSRLERVGLWILVNMVPASGDQVSVEKCRQVGNGAH
S*
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mRNA from alignment at Ecto-sp13_S_contig11245:830..5339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11245.1107.1 ID=mRNA_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:830..5339- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTCGTTTTTACCAGCGGAACGGACCGCCCGAGAAGGAAAAGTGACACG GCTTTCTACACCCCTAGCGGAGGCTGGAAAGGGTGGCAGCAGCGGCAGCA GCAGAAGGGGAGGACGTCGGAAGGCGCAAGCGCCTCTCAGGGTAGTCGTG GACCTTCGAGAGTTCCGCAGCGTCCTTCCTAACCTGCTGCATCAGGTAGA ATCCGATACGGCGGTTTCACTGTTCCTTTGTTTTTTTGCCTCCATGTTGG GTCACACACATGTCGCCCTTGTCCACATCTCCATCCGGTCAATGGTCTAA GCCCTACATGAGGCATGCAAAACATGAGTACGCCCCTCCGCGACCCCCCC CGCTCTTCAGCAAGGGTTTGAGCTGGTCCCGTTGGTCATAGCGGTCGGCG ACTACGTCCTGACGCCCCAGATCTGCGTCGAGCGAAAGAGCTTGTCCGAC TTGTTCCAGTCCATGTCTTCCGGCAGACTGTACAACCAGGTTTGTTTCGT TGTTTTGGTGGAGAGTGCTGGCCATTGGCTGAGGAATCACCATTCCTGCC GGTGGTTGATGTTTTGGTTGCTGGTGGTTGGTGTAGCCCTCATCGTTACC GTTGACTTTGTGCCGTGGCCCAGATGCCGTTGTTGTTGATGATGTTGTTG TTCCTCTAACTTACGCGTATGTGAAAGTCAAGAACCGGCCGAGAGTGACG GTGCCGATTTGATGCCCGTGGGTGGGTGGGGGCAGTCAAATTTCGTGTGG TACTTGTTGCTGCAAGTATACCGTCTCTTTTTTTTGTTTGGTTTTTGGAA ATGGCGTGTTTTTCTCCATTGTTCACCACCTAGGCTGGGGCATTCAGAAG AGTGCCGAAAGGTTTAAGGACAGAACGGTCGAAAGGTGTACGGACAGAAC AGTAGCGAAAGGGGTAAGGATCGACGTCCAAAAGAAAAAGGGATGGTACC GCCGTTGTTTCGTTCGACTGTTTGTTTAAGAGATGACGACAAACTAATCT GCAAAAGCAAAGCAGTCTCGTTGCGGGTTTCTGTGAGTAGTTTGATTTTG TGTTTTGTGGGGAAGGCATGTGTCACGAAACGGGTGTCGTAGATGCCTTC GTCGAATCGCGCTTTTGTCATGTCCTCAGGTGGAGGCGATGCTGAAGCAC TACAAGGTGCCCGTCTTGCTTATCGAGTTCAATCCTGACAAGGTGCGTCC ATTCATTGGTTGGCCTGAAGTTGTTGATGAATGCGCCCGTATTTGGCTGA TCGAGTTCAGCCCTCAGAAGGTGCGTTTGTGTGCTATTGTTCACGTACAT GGTGCGAAGAATGTTTCGACCTTTTCGACATCATCAGCGATTACTGGGGC TTTGTTCATGGCCTGTCCGCGTCATATTGTGCCTGTTTTTGTTGTTTTTC TTGTTCACGCTTCTTTTGTGTACATATCGTCGCGTTTTGGATTATGTTTG GTGCGCTTCTTGTTTAGTTACGTGTGTCGTACATGTGGGGAAAATAACAA ATGAGTGGCCTGTGAACTAACTTTTGCACCGCCGCAGGCGTTAGCAAGCA GGTGCTTATCAGAGGCAGGAATTGTCAAGAAAACAACACATTAACACCAC CACCATCACCACCACACACATCGTCGCCCTCTCCTCCTACCATGAAACAT CGCCAACAGTTGGGGGATCCGTCGTTTTCACCGAGCTTTTCCTTGACTCG TGCACTCTCGGCTTCCGATTCCCACCATGCAGGCTTTCTGTTTGCTTGGG TCGGGGGACCTGACCTCCGAGATCAAGCTGACCTCCATCACATCGCAGCT TACGCTTCTTACCCTCCACTTCCCTCAGCTCCGCATCCTGTGGTCCAAGT GAGCTGCGTGGTTGTGGTTTTGGTTGTGGTTGTTGTTGTTGTTGTTGTTA GTGTTGTGTTGCATTTTTGTTGTCGAGCTACGTACAGTACACACACGCTG CTTCCGTTCTTGCTTTCTTGGTTCGTGCCTCCTTTCCTTGTCTATTGAAT CTCTCATCGACTTCCCTTTTCTGTCAGTGCTTTTCATCTTGACTGGTATA TCTCTCTTGGTTGGTTTTCTTTTTGTTATTTTTCCGAGGTGAAAACAGCC TACCGCCGACTGTTCAAGGAGCTCTAGAACTGGTTCATTTCTTCTCATTC GTTTATCGCTTCCCCTTTTGTTCGTTTTTTTTCACAGGTCAAAACACGCG GCTGCCGAGAAGGTCTTCTTATTTTTTCTCTCTTCGTTCATATCTCTTCT CTCTCTCCTCTCTCTCTCAATTTTTGGTTATTTTCTCAGATCGGGACGCG CGAACACCGGCGTGTTCAAGGACCTCTTGAAGTTTTGCTCTCTTCTTCAC ATCTAGTTTCTATCTTTTTCTCTTGGCAGGTCGGAACACGCGACCGCGGA CATGTTCAAGGAGCTCATGAAGAACAACGCCGTGGTAGACGTGGCGAAGG CTCAGGCGGCCGGGGGAGGCGGAGAGGATGACCAGGGGACAGGGGATGAC GCCTCCGCCAAAGAGCTGCTGATGCGGCTGCCCGGCGTGAACGTGTACAA CTTTCGAAACGTACGAAACCGATTGACTACTTTCATTTTGGAAGCAGATG TTCCTCCTTTTCACGACGGGTAGGTTTAGTTCGAAGTCGCTTGTCGTGGA GCTTTCGAAACGTTTGAGACTGGCCACACGCACGTGAGTGTGTCGCTGCT TATGCTTTGGATGAAGCTCGACGCTTTTCGGTATACGACCAACGTAGGAG ACTGTGCTTGCATAAATCATGATTGTTCATGAAACGCGTACACCGCACGA TGGACATAGAGGGGGGCTGGGAGATGTATTGAGATGTCTCCTGTAGTCCG GGTTCTTGCCATCTCTTGGGGGTGGGGGTGGCGTGAAGAGTGAAATTACC GTAAAGCAGCTATGCCGTGTAGGTAGGTCGCTTTCGATCGATAATACCGC ACATCGGACGAAGAAAACTACGGCAGAAGTTGTGCTGGTTAGATGGGTAG CTCTCGATCTATGCAGTCTGGATGGCTCGCCGCCCACCCGTCGCGGTCTG CTGCCTACCATGGCCTGCACCCCCACCCTTTCTCAACCCCCATTTCGTGT CTGACGCGTGCTTGATCCCACTGGACACTTGTATCTCAGAACATGGTCTG GATAATCCCTGAAACCGCTCCACCATGTGGATGGCGCTCTGCTTCCAAGG CGGGCGATGGCCAATTGCCAATGCGTCGGACGAAGCCTCACAAACGAGCC CCCCGATCTGCATTATTTGTCCACTATCACAGGTAATCCGAGAAGTGGAC ACCATCGCCGAGCTCAGCCAGTTCTCCGAGGAGCAGCTGCGACCCTTGCT AGGAGAGGGGAACGCCGCCAAGCTCTTCAAGTTCTTCCGGCAGCCCGCGC CTGTGTAGTTTGTTTTTTCTTTTTCTCGTTAACCTTTCATGTTTGGACAA GTATTCCCAGCAGCCCAAACCTCGTCATAACTTCACTCCTCTTTTGTTGT ATGTCATCGGTGTACAATCTAATGTGGACATGAGCGGTAACGCAAGTGGT TGCCCAGGTAGTTGAGAGCGGGGGTTCGCGTCTCGGTTATTGTGTGGGAT TGGTTTGTTTGGCTGGCCTCTGAAGAATATTGAATAGAAAAGCATTGGCC AGAAATTAGTAGGGTTTTCTTATGGGTTGAAGCGTGCGTTGGACCAACAA GAACGACTCATGTGTAGTATGGCGGGCATCTGGACGCGTTGAAGTGGTGC CGGGCGAACTAGTGTTCGTGGGACAGAACGACGATGGAATGCGGCGCCAA GAGCGGACACCTTGATTGACATGCTGAATTTCGCGAAGGAGAAGAACGGG TGCAGCGGGTGGGATGCCCGTCTTTGTTGAGCAGGTGCCGCTGGGGGCAC CTCGCGATTCTCCTGTGGCTGCATCATCAGAAGGGGCGCGGTTGGGACTC GGGCACGCCTTCGAGCGCTTAGAATGGGGGCCACCTCGAGGCCCTGCGGT ACGCGATTCAGAACCGATATTGGGGGGGCCGACGCGGTGGTCCCAAATGC CGCCATGCACGGTCACCTCCGACTTTTTCGGTGGGCTTTACGCCAACGGC TGCAGCGCAGACTTGACGATGGTGTGTGTGCACGTTGGGAGCCACCAGGG GGAAGACGTGGATGTTATCAAGTGGGGCAGGGAAAAAAATGGCGCCGGTT GCAACAGCGAAGCAGGCTACTGGGCCGCCGTTGGGGGTCACGTCCAAGCG TTGGAGTATTGTAACACGATCGGGCTTTTCCTTGGGGGGCGAGTCGTCGT CCCTTCCGGCGGCGACAAGGGCGCAGATGGCACATGGCTGCACGGCTGCC AAGAGCAGTCGACTGGAGCGCGTCGGTTTGTGGATCCTGGTCAACATGGT ACCCGCCAGTGGCGATCAGGTCTCTGTGGAAAAATGCAGACAAGTCGGAA ATGGAGCACACAGCTAAAGGAGCTGGGGGGGGATTTTCCTGTACCGCATC GCGTTCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11245:830..5339-

>mRNA_Ecto-sp13_S_contig11245.1107.1 ID=mRNA_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:830..5339- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTATCAAGTGGGGCAGGGAAAAAAATGGCGCCGGTTGCAACAGCGAA
GCAGGCTACTGGGCCGCCGTTGGGGGTCACGTCCAAGCGTTGGAGTATTG
TAACACGATCGGGCTTTTCCTTGGGGGGCGAGTCGTCGTCCCTTCCGGCG
GCGACAAGGGCGCAGATGGCACATGGCTGCACGGCTGCCAAGAGCAGTCG
ACTGGAGCGCGTCGGTTTGTGGATCCTGGTCAACATGGTACCCGCCAGTG
GCGATCAGGTCTCTGTGGAAAAATGCAGACAAGTCGGAAATGGAGCACAC
AGCTAA
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