mRNA_Ecto-sp13_S_contig11245.1107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 506 bits (1303), Expect = 2.550e-162 Identity = 262/269 (97.40%), Postives = 265/269 (98.51%), Query Frame = 1
Query: 1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQPAPV 807
TSFLPAERTAREGKVTRLSTPLAEAG GGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHA+ADMFKELMKNNA VDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNV+R VDTIAELSQ SEEQLRPLLGEGNAAKL+KFFRQPAPV
Sbjct: 952 TSFLPAERTAREGKVTRLSTPLAEAGNGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVLRGVDTIAELSQLSEEQLRPLLGEGNAAKLYKFFRQPAPV 1220
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 367 bits (942), Expect = 2.250e-110 Identity = 210/287 (73.17%), Postives = 218/287 (75.96%), Query Frame = 1
Query: 1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLT------------------LLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQPAPV 807
TSFLPAERTAREGKVTRLSTPLAEAGKG SSGSSR+GGRRKAQA LRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK G LT S + LH + A + +ELMKNNA VDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV +REVDTIAELSQ SEEQLRPLLG+ NAAKL+KFFRQPAPV
Sbjct: 861 TSFLPAERTAREGKVTRLSTPLAEAGKGSSSGSSRKGGRRKAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK----FGDPSFPPSFSLTRALSAINPHHAGFLFAGVGGPGLRDQADLHHIAAYASYPPLPSAPHPVVQELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV--------LREVDTIAELSQLSEEQLRPLLGDVNAAKLYKFFRQPAPV 1135
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A7S3L7V4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7V4_9STRA) HSP 1 Score: 223 bits (569), Expect = 4.280e-65 Identity = 118/234 (50.43%), Postives = 155/234 (66.24%), Query Frame = 1
Query: 142 VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGG--------------GGEDDQGTGDDA--SAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
+ VD+REFRS LP++LHQ G L P+ + VGD+VL+ CVERKS+SDLF S +SGRLY Q E+M +HYK P LLIEF+P K+FCL S +L EI+ S S+L+LLT+HFP+LRILWS+ H T +FK+L N+ VDV KA G GGE+ + D+ SA+E+L+RLPGVNV+ R ++ EVDT+AEL+ S E+LR + G KLF FF Q
Sbjct: 8 IAVDVREFRSALPSILHQGGMRLAPVTLTVGDFVLSNVHCVERKSISDLFGSFASGRLYTQAESMCRHYKAPCLLIEFDPSKSFCLQNSSELGVEIRADSACSKLSLLTMHFPKLRILWSRGPHETLKIFKDLKMNHEEVDVEKAMEIGRNESVEALLRADKSKGGEEGEEEEDEINESAREMLLRLPGVNVHAARRIMEEVDTLAELALLSREELRKIAGPIVGQKLFTFFHQ 241
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA) HSP 1 Score: 226 bits (577), Expect = 2.170e-64 Identity = 121/230 (52.61%), Postives = 163/230 (70.87%), Query Frame = 1
Query: 115 RRKAQA-PLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKE--LLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
RR+A+A P VVD+REFRS LP+LLH +GF L PL IAVGDYVL+P++CVERKS++DLF S +SGRL+NQ +AM + Y+ PVLLIEF+ ++AF L G G+L+S+IK+ +I S++ LLT+HFPQLR+LWS+S HAT +F+ LM+N A VD A A AAG G D SA LL+RLPGV NFR ++R ++A ++ S QL +G A +L+ F R+
Sbjct: 162 RRRARAGPPTAVVDVREFRSALPSLLHARGFRLAPLTIAVGDYVLSPELCVERKSVADLFSSFASGRLWNQADAMARWYRKPVLLIEFSAERAFGLQGGGELSSDIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAGARA----GAADSNSAARRCLLLRLPGVTASNFRALMRAGGSVAGVAALSLPQLTAAMGRVGARQLYNFVRE 387
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA) HSP 1 Score: 239 bits (610), Expect = 5.120e-64 Identity = 123/216 (56.94%), Postives = 158/216 (73.15%), Query Frame = 1
Query: 130 APLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGG-GEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAK 774
A RVVVD+REFRS LPNLLH G ++VPL +AVGD+VLTP++ +ERKS++DLF S SGRLY QVE+ML+ YK LLIEF DKAF L GD+T +I++T+I S+L LLTLHFP LRILWS++ H T +FK L NA VDV KA AGGG GE+D G +A++LL++LPGV V NFR++++ VD +A LS+ S +L P+L AAK
Sbjct: 902 ACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGGTGEEDSEAGRHLTAQDLLLKLPGVTVSNFRSIMKRVDNLAALSRMSVAELHPILESEAAAK 1117
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A498LUB6_LABRO (DNA repair endonuclease XPF n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LUB6_LABRO) HSP 1 Score: 219 bits (558), Expect = 4.440e-63 Identity = 119/269 (44.24%), Postives = 172/269 (63.94%), Query Frame = 1
Query: 10 LPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEG-NAAKLFKFFRQPAPV 807
+P ER RE T L + ++ + + GGR + + P R++VD+REFRS LP+LLHQ+G ++ P+ + VGDY+LT +ICVERKS+SDL S+ SGRLY Q +M + Y+ PVLLIEF+P K+F L+ D EI + ITS+LTLLTLHFP+LR+LW S + TA++F+EL + D A AQA E + D + + L+R+PGVNV NF+++I+ +A+L FS+E+L +LG NA +L++F P V
Sbjct: 3 VPEEREGRED--TNLDLVRSHEPASATTDTRKAGGREEVKEPQRIIVDMREFRSELPSLLHQRGLDIDPVTLEVGDYILTSEICVERKSVSDLIGSLQSGRLYTQCLSMSRFYRRPVLLIEFDPAKSFSLVARSDFRQEISASDITSKLTLLTLHFPRLRLLWCPSPYVTAELFQELKQGRPEPDAATAQAVTAESETVMESADLYNPGPYDFLLRMPGVNVKNFKSLIKHASCLADLLTFSQEKLSEILGSSSNARQLYEFLHNPMNV 269
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A8J9TMD7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TMD7_PHATR) HSP 1 Score: 223 bits (569), Expect = 8.260e-63 Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1
Query: 100 SRRGGRRKAQAPLR--VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQ--------GTGDDA---SAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
SRRG ++ ++ R + VD+REFRS LP++LHQ G L P+ + VGD+VL+ CVERKS+SDLF S +SGRLY Q EAM KHYK P LLIEF+P K+FCL S +L EI+ S+ S++ LLT+HFPQLRILWS+S H T +F+EL N+ VDV KA G D G+D A+++L+RLPGVNV++ R +++E D++AEL++ S ++LR + G KLF FFRQ
Sbjct: 181 SRRGRGKEDRSKERRDIAVDVREFRSALPSILHQGGMRLAPVTLTVGDFVLSNVHCVERKSISDLFGSFASGRLYTQAEAMSKHYKCPCLLIEFDPTKSFCLQNSNELGVEIRTESVCSKIALLTMHFPQLRILWSRSPHETLRIFRELKTNHDEVDVEKAIDIGRNESPDALLQLPAGLAEGEDEINEMARDMLLRLPGVNVHSARRIMQECDSLAELAEMSRDELRRIAGPVTGQKLFAFFRQ 425
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A6U2T7W2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2T7W2_9STRA) HSP 1 Score: 216 bits (551), Expect = 7.860e-61 Identity = 114/228 (50.00%), Postives = 153/228 (67.11%), Query Frame = 1
Query: 142 VVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAG----------GGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFFRQ 795
+VVD+REFRS LP++LHQQ L P+ + VGD+VL+P CVERKS+SDLF S +SGRL+ Q EAM KHYK P LLIEF+P+K+F L +L S+IK SI S+++LL +HFP+LRILWS+S + T +FK L N+ DV KA G GGGE + +A+++L+RLPG+N N R +I D+IAEL++ S + L+ LLG KLF FFR+
Sbjct: 141 IVVDVREFRSALPSILHQQEMRLAPVTLTVGDFVLSPVHCVERKSISDLFGSFASGRLHTQAEAMSKHYKCPCLLIEFDPEKSFSLQNVNELGSDIKQDSICSKMSLLLMHFPRLRILWSRSPYETVKIFKSLKVNHGEPDVEKAVEIGSNESIDNLIIGGGEVTDEDEINEAARDMLLRLPGINRNNARRIIDRCDSIAELAEMSRDDLKELLGPLTGQKLFTFFRK 368
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: A0A1V9ZKY2_9STRA (DNA repair endonuclease XPF n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKY2_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.430e-60 Identity = 114/231 (49.35%), Postives = 162/231 (70.13%), Query Frame = 1
Query: 100 SRRGGRRKAQ-APLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKLFKFF 789
+R GGR K RVVVD+REFRS LP++LH++G L P+ + VGDY+L+ Q+CVERKS+SDLF S+++GRL+NQ E M +HY+ P+LLIEFNP+K F L G++T++IK +SITS+L+LL LHFPQLR LWSKS AT ++FK++ K + DV A A G + + + +A ++L +LPG+ +N+R V V +A+LS+ + L PL+G NA KL +FF
Sbjct: 596 TRTGGRAKIHLVSTRVVVDVREFRSALPSMLHREGIVLHPVTLEVGDYILSSQMCVERKSISDLFGSLNNGRLFNQAEMMTRHYQTPLLLIEFNPEKPFALQEVGEITTDIKHSSITSKLSLLVLHFPQLRFLWSKSPQATVELFKQVKKGHDDPDVEAAVAVGSAAGANSSSFYNMNAVDVLRKLPGITAHNYRKVAAHVTNLADLSKMAVADLEPLVGPTNARKLHRFF 826
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Match: UPI001CF6F95B (DNA repair endonuclease XPF n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6F95B) HSP 1 Score: 226 bits (576), Expect = 3.560e-60 Identity = 126/276 (45.65%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAVVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVIREVDTIAELSQFSEEQLRPLLGEGNAAKL-FKFFRQ----PAPV 807
T +P ER RE L+ L A ++ + + GG+ + + P RV+VD+REFRS LP+LLH++G ++ P+ + VGDY+LTP+ CVERKS+SDL S+ SGRLYNQ +M ++Y+ PVLLIEF+P K F L D EI I+S+LTLLTLHFP+LRILW S HATAD+F EL K D A AQA + + D + + L+++PGVN+ N+R +IR D++A+L +FS+++L +LG N AKL ++F PAPV
Sbjct: 618 TMVIPEEREGREDTNLDLARNLEPAN--ATTNTRKAGGQEQPKEPSRVIVDMREFRSELPSLLHRRGLDIDPITLEVGDYILTPETCVERKSVSDLIGSLQSGRLYNQCLSMTRYYRKPVLLIEFDPAKPFSLTARTDFRHEISSNDISSKLTLLTLHFPRLRILWCPSPHATADLFLELKKGRLEPDAAAAQAVTAESDMVTESADLYNPGPYDFLLKMPGVNIKNYRALIRNADSLADLVKFSQDKLAEILGNANNAKLLYEFLHNDADVPAPV 891 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11245.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11245.1107.1 >prot_Ecto-sp13_S_contig11245.1107.1 ID=prot_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp MLSSGAGKKMAPVATAKQATGPPLGVTSKRWSIVTRSGFSLGGESSSLPAback to top mRNA from alignment at Ecto-sp13_S_contig11245:830..5339- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11245.1107.1 ID=mRNA_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:830..5339- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11245:830..5339- >mRNA_Ecto-sp13_S_contig11245.1107.1 ID=mRNA_Ecto-sp13_S_contig11245.1107.1|Name=mRNA_Ecto-sp13_S_contig11245.1107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:830..5339- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |