mRNA_Ecto-sp13_S_contig11244.1106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11244.1106.1
Unique NamemRNA_Ecto-sp13_S_contig11244.1106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-11
Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    4 RIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFHEGMGRDEIFVDALRTKRARGARSNVAAEQASAAARDREAKYLADNFLE 324
            R + FFNYK S  RF VEHAFGRLK KF    N +   +D    I+ ACV+L++FI   EG    +  VD   T+   G   +  A    +  R RE  YL  NFL+
Sbjct:  199 RAERFFNYKHSSMRFRVEHAFGRLKKKFRALLNGLDCHLDHCPTIVNACVILHNFIFMCEGESPADHGVDNAPTRNGTGRALSQGAGPFDSE-RAREVDYLRRNFLQ 304          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: UPI0018CE4A4A (putative nuclease HARBI1 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE4A4A)

HSP 1 Score: 58.9 bits (141), Expect = 7.050e-8
Identity = 24/60 (40.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 RIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFHE 183
            RIQ  FNY+LS++R ++E+AFG L  ++ V +  M F  +   +I+ AC++L++FI+ H+
Sbjct:  284 RIQKVFNYRLSRSRRVIENAFGILTARWRVMRTTMEFSPENAEKIVLACLVLHNFIMLHD 343          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: UPI0018CD85F5 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CD85F5)

HSP 1 Score: 57.0 bits (136), Expect = 3.340e-7
Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 RIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFHE 183
            R Q  FNY+LS+TR ++E+AFG L  ++ V +  M F  + V +I+ AC++L++F++ ++
Sbjct:  282 RTQKVFNYRLSRTRRVIENAFGILTARWRVMRTSMEFNPENVEKIVLACLVLHNFVMLND 341          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: UPI00142560BA (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142560BA)

HSP 1 Score: 55.8 bits (133), Expect = 5.670e-7
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 TRIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYD 165
            TR Q+ FNYKLS TR +VEHAFGRLKG++ +       ++  +  ++QAC  L++
Sbjct:  142 TRPQNNFNYKLSLTRMVVEHAFGRLKGRWRLLLKENEHELANLRHVVQACCTLHN 196          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: A0A6P4FV40_DROTK (uncharacterized protein LOC108055497 n=1 Tax=Drosophila takahashii TaxID=29030 RepID=A0A6P4FV40_DROTK)

HSP 1 Score: 54.3 bits (129), Expect = 6.160e-7
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 QSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFH 180
            Q  FNY LSKTR +VE+AFG LK +F      +  ++++ SQII  C +L++F + H
Sbjct:   36 QKAFNYNLSKTRRVVENAFGHLKARFRRIGKGLDNRVEKSSQIISCCCILHNFCIAH 92          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: A0A1X7TSC4_AMPQE (DDE Tnp4 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TSC4_AMPQE)

HSP 1 Score: 56.2 bits (134), Expect = 6.240e-7
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 TRIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFH 180
            TR Q  FNY+LSK R +VEHA+GRLKG++     R+   ++ V  ++ AC +L++    H
Sbjct:  315 TRDQKRFNYRLSKGRVVVEHAYGRLKGRWRCLLKRLDVSVEFVPDVVAACCVLHNICEIH 374          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: A0A6P4GJ07_DROTK (uncharacterized protein LOC108061379 n=3 Tax=Drosophila takahashii TaxID=29030 RepID=A0A6P4GJ07_DROTK)

HSP 1 Score: 54.3 bits (129), Expect = 6.270e-7
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 QSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDFILFH 180
            Q  FNY LSKTR +VE+AFG LK +F      +  ++++ SQII  C +L++F + H
Sbjct:   37 QKAFNYNLSKTRRVVENAFGHLKARFRRIGKGLDNRVEKSSQIISCCCILHNFCIAH 93          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: UPI0014255786 (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255786)

HSP 1 Score: 55.1 bits (131), Expect = 1.600e-6
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 RIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYD 165
            R Q+ FNYKLS+ R IVEHAFGRLKG++ +   R   +  ++  ++QAC  L++
Sbjct:  335 REQTRFNYKLSQCRVIVEHAFGRLKGRWRILLKRNEHETHKLRPVVQACCTLHN 388          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: UPI0018935D34 (uncharacterized protein LOC119390871 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018935D34)

HSP 1 Score: 54.3 bits (129), Expect = 2.330e-6
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   10 QSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLL 159
            Q  FNYKLSKTR IVE+AFGRLK +F     RM   I  V  II+AC +L
Sbjct:  203 QKNFNYKLSKTRRIVENAFGRLKARFRFIMKRMEGDISHVPIIIRACCVL 252          
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Match: A0A814VH19_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814VH19_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 2.340e-6
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   10 QSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQACVLLYDF 168
            Q+ FNY+LS+TR +VE AFG+LK +F +   ++   ID V+ II+  V+L++F
Sbjct:   86 QTRFNYRLSRTRNVVERAFGQLKNRFWLLHRKIECDIDNVANIIKTAVILHNF 138          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11244.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSG7_9PHAE1.220e-1141.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI0018CE4A4A7.050e-840.00putative nuclease HARBI1 n=2 Tax=Teleopsis dalmann... [more]
UPI0018CD85F53.340e-738.33protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]
UPI00142560BA5.670e-745.45protein ALP1-like n=1 Tax=Anneissia japonica TaxID... [more]
A0A6P4FV40_DROTK6.160e-743.86uncharacterized protein LOC108055497 n=1 Tax=Droso... [more]
A0A1X7TSC4_AMPQE6.240e-741.67DDE Tnp4 domain-containing protein n=1 Tax=Amphime... [more]
A0A6P4GJ07_DROTK6.270e-743.86uncharacterized protein LOC108061379 n=3 Tax=Droso... [more]
UPI00142557861.600e-646.30protein ALP1-like n=1 Tax=Anneissia japonica TaxID... [more]
UPI0018935D342.330e-658.00uncharacterized protein LOC119390871 n=1 Tax=Rhipi... [more]
A0A814VH19_9BILA2.340e-645.28Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11244contigEcto-sp13_S_contig11244:3960..4840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categorymitochondrion
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462587.3680882-CDS-Ecto-sp13_S_contig11244:3959..40371681462587.3680882-CDS-Ecto-sp13_S_contig11244:3959..4037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11244 3960..4037 +
1681462587.3820145-CDS-Ecto-sp13_S_contig11244:4593..48391681462587.3820145-CDS-Ecto-sp13_S_contig11244:4593..4839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11244 4594..4839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11244.1106.1prot_Ecto-sp13_S_contig11244.1106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11244 3960..4839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11244.1106.1

>prot_Ecto-sp13_S_contig11244.1106.1 ID=prot_Ecto-sp13_S_contig11244.1106.1|Name=mRNA_Ecto-sp13_S_contig11244.1106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
TRIQSFFNYKLSKTRFIVEHAFGRLKGKFMVWKNRMYFKIDRVSQIIQAC
VLLYDFILFHEGMGRDEIFVDALRTKRARGARSNVAAEQASAAARDREAK
YLADNFLE
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mRNA from alignment at Ecto-sp13_S_contig11244:3960..4840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11244.1106.1 ID=mRNA_Ecto-sp13_S_contig11244.1106.1|Name=mRNA_Ecto-sp13_S_contig11244.1106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=881bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11244:3960..4840+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAGGATCCAAAGTTTCTTCAACTACAAGCTCTCGAAGACGCGGTTCAT CGTCGAGCATGCTTTCGGGCGCCTGAAGGTGAACCATCCGTAAGTTCGGA CGGTGATATTTCAGGGCATGAAGAGTGGCAAAGGTAGTTCATGCCTTCGG AATACCTCAAGCCCTGACAACCTTGTGTCAACTACCGTAGTACCCTTGCG ACATGAACCTGATATGTTGTTGTTCCCGCTTTATTTGCGTCTCTCCCTTC GAGTGCGCTCGGAGCATTGCTTTGCACGGCTAACTCCATGGGCGCCCGAC CGTGCTAACCGCATGCATCCGCATACACATTCTGTTTACATCGCCGATGC GTTGTGGTTCCATACCGTTGACATCGCACCGCCTGTTATTGGTTCCGTGG ATGCGTAGCTACCGTAGAGGCCCGCCGACAGGTGGGGGTGGGAGTATGCG TCCTTTCAGTCTCGAAAACATCCAATCCCGCACAGCCGACTTCGCCCCGC GGGTTATGTTTTCAAATCTATAATATGTTGTGAACTCAAAGGGTTAGACG GTTCCCCCATCCAGTGTACTCTCTGAATTCCTTTGACTTGCTTTCGTTTC TCCTTATGTCGTTTGCTGTCGCTACGAACACCAGGGGAAGTTCATGGTCT GGAAGAACCGCATGTACTTCAAAATCGACCGAGTTTCGCAGATCATCCAG GCGTGCGTACTCCTGTACGACTTCATCCTGTTCCACGAGGGCATGGGGAG GGATGAGATCTTCGTCGACGCACTGAGAACCAAGCGCGCGCGCGGCGCGC GTTCGAACGTAGCGGCTGAGCAGGCATCAGCAGCGGCCCGTGACCGCGAG GCGAAATACCTCGCAGACAACTTCTTGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11244:3960..4840+

>mRNA_Ecto-sp13_S_contig11244.1106.1 ID=mRNA_Ecto-sp13_S_contig11244.1106.1|Name=mRNA_Ecto-sp13_S_contig11244.1106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11244:3960..4840+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAGGATCCAAAGTTTCTTCAACTACAAGCTCTCGAAGACGCGGTTCAT
CGTCGAGCATGCTTTCGGGCGCCTGAAGGGGAAGTTCATGGTCTGGAAGA
ACCGCATGTACTTCAAAATCGACCGAGTTTCGCAGATCATCCAGGCGTGC
GTACTCCTGTACGACTTCATCCTGTTCCACGAGGGCATGGGGAGGGATGA
GATCTTCGTCGACGCACTGAGAACCAAGCGCGCGCGCGGCGCGCGTTCGA
ACGTAGCGGCTGAGCAGGCATCAGCAGCGGCCCGTGACCGCGAGGCGAAA
TACCTCGCAGACAACTTCTTGGAG
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