mRNA_Ecto-sp13_S_contig11234.1097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11234.1097.1
Unique NamemRNA_Ecto-sp13_S_contig11234.1097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 7.470e-49
Identity = 87/117 (74.36%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 KGLTPLHVAAYQDNLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLVKSGVEPNERLQRLLANAPADRA*LRRSMVVMLHAQGVEA 351
            KG T LHVAAY + L +M+ALLQKGANAN PDD G GPLHLVCKY KA S AVADLLLRW A+ETATDNDGNTPAD ++S  E + RLQRLLANAPA RA  RR MV+ML AQGVEA
Sbjct:  325 KGSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYPKARSVAVADLLLRWGAEETATDNDGNTPADFIQSSDESDGRLQRLLANAPAGRAWRRRGMVIMLRAQGVEA 441
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: D7FYF9_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF9_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.450e-46
Identity = 86/118 (72.88%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:    1 KGLTPLHVAAY-QDNLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLVKSGVEPNERLQRLLANAPADRA*LRRSMVVMLHAQGVEA 351
            +GLTPLHVAAY  D   +M+ALLQKGANAN  DD G G L LVC  +KASS A+ADLLLRW ADETA DNDGNT ADLVKSG EPN+ LQRLLAN PADRA  RRSMVVML AQ  +A
Sbjct:    9 QGLTPLHVAAYIDDTCPNMLALLQKGANANARDDDGRGSLLLVCN-TKASSVAMADLLLRWGADETAADNDGNTAADLVKSGAEPNKGLQRLLANVPADRAWRRRSMVVMLCAQSGDA 125
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.990e-34
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 1 
Query:    1 KGLTPLHVAAYQDNLRSMIALLQKG-ANANTPDDHGFGPLHLVCKYSKA-SSGAVADLLLRWSADETATDNDGNTPADLVKSGVEPNERLQRLLANAPADRA*LRRSMVVMLHAQGVEA 351
            KG+TPLH AAYQ N   M+ LLQKG ANAN  D+HG  PLH++C   +  S+ A +D+LLR  ADETATD D +TPAD++ S    N  LQ+LLANAPADRA  RR  +VML AQGV+A
Sbjct:  239 KGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVMLRAQGVQA 357
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.680e-17
Identity = 53/117 (45.30%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:   13 PLHVAAYQDNLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLVKSGVEPN----------ERLQRLLANAPADRA*LRRSMVVMLH 333
            PL  A    NL++M  LL  GA+    D  G  PLHL C    +   A  DLLLRW ADETA +NDG TPADL+      N          ER++ LLA APAD+A  RR  +VML 
Sbjct:  523 PLFSATDPRNLKAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLR 639
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:   10 TPLHVAAYQD--NLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLV----------KSGVEPNERLQRLLANAPADRA*LRRSMVVM 327
            TPLH A  +   ++ + +ALL+ GAN N   DH   PLH+ C +S     A  +LLLRW ADET ++++G+ PAD++          +     ++R++R+LA APADR+  RR  +V+
Sbjct:  318 TPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNV---AAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVL 432
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.310e-15
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    4 GLTPLHVAAYQDNLRSMIALLQKGANANTPDDHGFGPLHLVC-KYSKASSGAVADLLLRWSADETATDNDGNTPADLV-------KSGVEPNERLQRLLANAPADRA*LRRSMVVMLHA 336
            G TPLHVA+ +  L + IALL+ GA+    +     PLHLV  K     +  + DLLLR  ADETA   +G+T AD+V        S  E  +R+++LLA APADRA  RR  +++  A
Sbjct:  589 GSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRA 707
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: A0A6H5JQI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.620e-8
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 KGLTPLHVAAYQDNLRSMIALLQKGANANTPDDHGFGPLHL 123
            +GL PLHVAAY + L +++ALLQ G NANTPD  G GPLHL
Sbjct:  309 QGLAPLHVAAYWEKLGTLLALLQDGTNANTPDTDGRGPLHL 349
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: A0A6H5JM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM79_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.150e-8
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   13 PLHVA--AYQDNLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLV 234
            PLH+A  A   ++R++ ALL+ G N N+   +   PL++ C YS   +GA  +LLLRW ADET +++DG  P D +
Sbjct:  294 PLHLAVDARTSSIRTIRALLEGGVNINSLVTYAETPLYVACCYS---NGAAVELLLRWGADETWSNDDGAIPIDAI 366
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: D7G6Z8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.130e-7
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:   10 TPLHVAA-YQDNLRSMI-ALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLVKSGVEP---------NERLQRLLANAPADRA 300
            TPLH+   Y+     M+ ALL+ GA+ N   +    PLH+       S+ A  +LLLR   DE  T++DG+TPAD++ +             N+R+ R+LA APAD A
Sbjct:  188 TPLHLTVDYRVASVGMVGALLEGGADVNARAERDQTPLHVA---GGRSNVAAVELLLRCGVDEKLTNDDGDTPADVIGAADHAGHMVDNEADNQRILRMLARAPADMA 292
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BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.920e-7
Identity = 35/104 (33.65%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   40 NLRSMIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETATDNDGNTPADLVKSGVE--------PNERLQRLLANAPADRA*LRRSMVVM 327
            ++ + + L Q GA  N+ ++     L   C +    +   A LLL W  DE A D++G T   +V   +         P ERL RLLA AP DRA  RR  +V+
Sbjct:  173 DIEARLTLFQLGAKVNSKENERITSLSSACSFGNHDA---AGLLLSWGGDENAMDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVL 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11234.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FYG4_ECTSI7.470e-4974.36Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FYF9_ECTSI2.450e-4672.88EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCR2_ECTSI8.990e-3458.82Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE2.680e-1745.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI2.670e-1538.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHY9_9PHAE5.310e-1542.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI2_9PHAE2.620e-865.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM79_9PHAE5.150e-842.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Z8_ECTSI1.130e-737.04Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JU78_9PHAE5.920e-733.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11234contigEcto-sp13_S_contig11234:1126..1476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score134.0
Seed ortholog evalue3.2e-29
Seed eggNOG ortholog2880.D7FYG4
Model size351
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionEsV-1-8
Ec32 orthologEc-19_001170.1
Cds size252
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.8708127-UTR-Ecto-sp13_S_contig11234:1125..11731681462586.8708127-UTR-Ecto-sp13_S_contig11234:1125..1173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11234 1126..1173 -
1681462586.890652-UTR-Ecto-sp13_S_contig11234:1425..14761681462586.890652-UTR-Ecto-sp13_S_contig11234:1425..1476Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11234 1426..1476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.8812-CDS-Ecto-sp13_S_contig11234:1173..14251681462586.8812-CDS-Ecto-sp13_S_contig11234:1173..1425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11234 1174..1425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11234.1097.1prot_Ecto-sp13_S_contig11234.1097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11234 1174..1425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11234.1097.1

>prot_Ecto-sp13_S_contig11234.1097.1 ID=prot_Ecto-sp13_S_contig11234.1097.1|Name=mRNA_Ecto-sp13_S_contig11234.1097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MIALLQKGANANTPDDHGFGPLHLVCKYSKASSGAVADLLLRWSADETAT
DNDGNTPADLVKSGVEPNERLQRLLANAPADRA*
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mRNA from alignment at Ecto-sp13_S_contig11234:1126..1476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11234.1097.1 ID=mRNA_Ecto-sp13_S_contig11234.1097.1|Name=mRNA_Ecto-sp13_S_contig11234.1097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11234:1126..1476- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGATTGACGCCTCTTCACGTCGCCGCCTATCAGGACAACCTCCGCAG
TATGATCGCGCTTCTACAGAAGGGAGCCAACGCCAACACTCCAGACGACC
ATGGGTTTGGGCCCCTTCACCTGGTGTGCAAGTATTCCAAGGCGAGCTCG
GGAGCTGTGGCCGACCTTCTTCTAAGATGGAGTGCGGACGAGACGGCTAC
CGACAACGACGGCAATACCCCTGCAGACCTCGTGAAAAGCGGTGTCGAGC
CCAACGAGCGGCTGCAACGGCTATTGGCGAACGCTCCGGCAGACAGGGCC
TGATTGCGGCGGTCTATGGTGGTTATGTTACATGCCCAGGGTGTGGAGGC
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11234:1126..1476-

>mRNA_Ecto-sp13_S_contig11234.1097.1 ID=mRNA_Ecto-sp13_S_contig11234.1097.1|Name=mRNA_Ecto-sp13_S_contig11234.1097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11234:1126..1476- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGCGCTTCTACAGAAGGGAGCCAACGCCAACACTCCAGACGACCA
TGGGTTTGGGCCCCTTCACCTGGTGTGCAAGTATTCCAAGGCGAGCTCGG
GAGCTGTGGCCGACCTTCTTCTAAGATGGAGTGCGGACGAGACGGCTACC
GACAACGACGGCAATACCCCTGCAGACCTCGTGAAAAGCGGTGTCGAGCC
CAACGAGCGGCTGCAACGGCTATTGGCGAACGCTCCGGCAGACAGGGCCT
GA
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