mRNA_Ecto-sp13_S_contig11228.1091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI) HSP 1 Score: 154 bits (390), Expect = 2.180e-42 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3
Query: 3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE
Sbjct: 631 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 697
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE) HSP 1 Score: 152 bits (383), Expect = 2.130e-41 Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3
Query: 3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW SGLG+
Sbjct: 636 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWGSGLGD 702
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A482S199_9ARCH (DUF2009 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S199_9ARCH) HSP 1 Score: 104 bits (259), Expect = 1.610e-27 Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 3
Query: 3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
N +M ILSDFFKHG+DGSGDDGGSCIDGRLTSAWNWCS L KKPF +F G GFDG
Sbjct: 41 NLRMQILSDFFKHGFDGSGDDGGSCIDGRLTSAWNWCSQLHKKPFYHVFMFTGFQGFDG 99
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A813GID5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GID5_POLGL) HSP 1 Score: 103 bits (258), Expect = 3.500e-27 Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 3
Query: 9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
+M I+ DFF+HG+DGSGDDGGSCIDGRLTS WNWC+ + KK + P F L G GFDGG+++GLG
Sbjct: 56 RMTIMQDFFRHGFDGSGDDGGSCIDGRLTSCWNWCAKVEKKKYFPAFLLTGFTGFDGGFTTGLGN 120
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S2UYK9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK9_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.550e-26 Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 3
Query: 3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
+ KM ILSDFFKHG+DG GDDGGSCIDGRLTSAWNWCS + KK + +F L G GFDG W
Sbjct: 79 DVKMHILSDFFKHGFDGDGDDGGSCIDGRLTSAWNWCSKIAKKKYYNVFMLGGFQGFDGDW 139
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0Y5A1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y5A1_HEMAN) HSP 1 Score: 103 bits (258), Expect = 9.790e-26 Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 3
Query: 15 AILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
AIL DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KKPF P+F LAG GFDG
Sbjct: 198 AILCDFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKPFYPVFLLAGFQGFDG 252
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0HDZ9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HDZ9_9CRYP) HSP 1 Score: 100 bits (249), Expect = 3.690e-25 Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 3
Query: 9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
+ +IL+DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KK + PIF LAG GFDG
Sbjct: 116 RKSILADFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKSYYPIFLLAGFQGFDG 172
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A6V1PHG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PHG9_HETAK) HSP 1 Score: 101 bits (251), Expect = 4.230e-25 Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 3
Query: 9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
KM IL+DFFKHG+DG GDDGGSCIDGRLTSAWNWCS L KK + +F L+G GFDG W
Sbjct: 150 KMEILADFFKHGFDGDGDDGGSCIDGRLTSAWNWCSRLGKKRYYHVFNLSGFQGFDGDW 208
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0W1R3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1R3_9CRYP) HSP 1 Score: 103 bits (258), Expect = 4.660e-25 Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 3
Query: 15 AILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
AIL DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KKPF P+F LAG GFDG
Sbjct: 284 AILCDFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKPFYPVFMLAGFQGFDG 338
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: D6PJ38_9ZZZZ (Predicted protein n=1 Tax=uncultured organism MedDCM-OCT-S04-C2 TaxID=743613 RepID=D6PJ38_9ZZZZ) HSP 1 Score: 103 bits (256), Expect = 4.300e-24 Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 3
Query: 9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
+M ILSDFFKHG+DGSGDDGGSCIDGRLTS WNWCS L KKP+ +F G GFDG W
Sbjct: 476 RMQILSDFFKHGFDGSGDDGGSCIDGRLTSTWNWCSKLHKKPYYHVFMFTGFQGFDGDW 534 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11228.1091.1 >prot_Ecto-sp13_S_contig11228.1091.1 ID=prot_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp KTPRWPSCRTFSSTDGMAQATMGGLVSTDGSPLRGTGAPFCPRSLSRRSSback to top mRNA from alignment at Ecto-sp13_S_contig11228:4685..5507- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11228.1091.1 ID=mRNA_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11228:4685..5507- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11228:4685..5507- >mRNA_Ecto-sp13_S_contig11228.1091.1 ID=mRNA_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11228:4685..5507- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |