mRNA_Ecto-sp13_S_contig1122.1082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1122.1082.1
Unique NamemRNA_Ecto-sp13_S_contig1122.1082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: D7FSE3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 7.860e-45
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 2 
Query:   59 TRRVTWNYTRNFFWSGRSRGRWTTSSRAFLGAEELEVLVTGTSELDFEELAKATEYDGGYVEDHHTILAFWRAVGQMPAEEQRRLLMFVTGSKK 340
            TRRVT N TR+F WSGR+RGRWTTS +A LGAEELEVLVTGTSELDF++LAK TEYDGGY +DH TILAFWRAVG+MPAEEQR LLMFVTGSK+
Sbjct:   20 TRRVTRNLTRSFSWSGRARGRWTTSRKASLGAEELEVLVTGTSELDFDKLAKTTEYDGGYGKDHCTILAFWRAVGRMPAEEQRHLLMFVTGSKE 113
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.100e-28
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 2 
Query:  131 SSRAFLGAEELEVLVTGTSELDFEELAKATEYDGGYVEDHHTILAFWRAVGQMPAEEQRRLLMFVTGSKK 340
            +S +   AEELEVLVTGTSELDFEELAKATEYDGGY EDH TILAFWRAVG+MPAEEQRRLLMFVTGSKK
Sbjct: 1079 ASISLFRAEELEVLVTGTSELDFEELAKATEYDGGYDEDHRTILAFWRAVGRMPAEEQRRLLMFVTGSKK 1148
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.380e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:  152 AEELEVLVTGTSELDFEELAKATEYDGGYVEDHHTILAFWRAVGQMPAEEQRRLLMFVTGSKK 340
            AEELEVLVTGTSELDFEELAKATEYDGGY EDH TI AFWRAVG+MPAEEQRRLLMFVTGSKK
Sbjct: 1591 AEELEVLVTGTSELDFEELAKATEYDGGYGEDHRTIRAFWRAVGEMPAEEQRRLLMFVTGSKK 1653
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A7S2GRV6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRV6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-16
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAITECEGFGL 515
            + F+IQRAGPD+  LPT+HTCFNTL+LPEY   +KL   L RAI ECEGFGL
Sbjct:   49 MPFKIQRAGPDSMQLPTSHTCFNTLLLPEYDSYDKLVDRLSRAILECEGFGL 100
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.410e-16
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAITECEGFGL 515
            ++  IQRAGPD+DHLPTAHTCFNTL+LPEY  +EKL   L +AI+EC GFGL
Sbjct: 1382 LALLIQRAGPDSDHLPTAHTCFNTLLLPEYGSKEKLKERLMKAISECRGFGL 1433
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: F0XWH0_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWH0_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 2.960e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:  363 SFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAITECEGFGL 515
            +FRIQRAGPD+ +LPT+HTCFNTL+LP+Y   +K+  LL  AI ECEGFGL
Sbjct:  340 AFRIQRAGPDSSNLPTSHTCFNTLLLPDYDPPDKVAHLLNIAIRECEGFGL 390
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A7S2R9E4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9E4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.240e-14
Identity = 29/52 (55.77%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAITECEGFGL 515
            ++F++ R GPD++ LPT+HTCFNT+++PEYS + KL +L++ A++ECEGFGL
Sbjct:  877 LTFKVHRMGPDSEQLPTSHTCFNTMLIPEYSSQAKLNKLVRLAVSECEGFGL 928
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A7S3P553_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P553_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.620e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEE--KLTRLLKRAITECEGFGL 515
            + F+IQRAGPD+  LPTAHTCFNTL+LP+Y GE+  KL+RLL RAI +CEGFGL
Sbjct: 1408 MPFKIQRAGPDSQQLPTAHTCFNTLLLPDY-GEDYSKLSRLLGRAILDCEGFGL 1460
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A7S4QMC4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMC4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.560e-14
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAITECEGFGL 515
            + F+IQRAGPD+ HLPT+HTCFNTL+LP+Y   +KL   +  A+ ECEGFGL
Sbjct:  390 LPFKIQRAGPDSMHLPTSHTCFNTLLLPDYDSYDKLVDRVSHAVVECEGFGL 441
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BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Match: A0A1Z5JAZ9_FISSO (Ubiquitin-protein ligase E3 A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAZ9_FISSO)

HSP 1 Score: 78.2 bits (191), Expect = 1.150e-13
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 3 
Query:  360 ISFRIQRAGPDTDHLPTAHTCFNTLVLPEY-SGEEKLTRLLKRAITECEGFGL 515
            + F++QRAG D+DHLPT+HTCFNTL+LP+Y S  EKL   L RAI ECEGFGL
Sbjct: 1242 LQFKVQRAGIDSDHLPTSHTCFNTLLLPDYGSNYEKLCDRLGRAILECEGFGL 1294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1122.1082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSE3_ECTSI7.860e-4581.91HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI2.100e-2887.14HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2Y9_9PHAE1.380e-2793.65HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2GRV6_9STRA3.200e-1667.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TN24_9STRA8.410e-1669.23Ubiquitin protein ligase e3a n=2 Tax=Monodopsidace... [more]
F0XWH0_AURAN2.960e-1466.67HECT domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2R9E4_9STRA3.240e-1455.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3P553_9STRA4.620e-1470.37Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4QMC4_9STRA6.560e-1461.54Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JAZ9_FISSO1.150e-1367.92Ubiquitin-protein ligase E3 A n=2 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1122contigEcto-sp13_S_contig1122:14735..17183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size518
Hectar predicted targeting categoryother localisation
Exons3
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.591947-CDS-Ecto-sp13_S_contig1122:14734..148801681462585.591947-CDS-Ecto-sp13_S_contig1122:14734..14880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1122 14735..14880 -
1681462585.6041865-CDS-Ecto-sp13_S_contig1122:16459..165441681462585.6041865-CDS-Ecto-sp13_S_contig1122:16459..16544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1122 16460..16544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.6123505-UTR-Ecto-sp13_S_contig1122:16544..166801681462585.6123505-UTR-Ecto-sp13_S_contig1122:16544..16680Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1122 16545..16680 -
1681462585.62071-UTR-Ecto-sp13_S_contig1122:17033..171831681462585.62071-UTR-Ecto-sp13_S_contig1122:17033..17183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1122 17034..17183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1122.1082.1prot_Ecto-sp13_S_contig1122.1082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1122 14735..16544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1122.1082.1

>prot_Ecto-sp13_S_contig1122.1082.1 ID=prot_Ecto-sp13_S_contig1122.1082.1|Name=mRNA_Ecto-sp13_S_contig1122.1082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MPAEEQRRLLMFVTGSKKVRFCCVDFVSYPAGGTGHGPPSYGPHVLQHSR
APGVFGRGKIDEAAEESHHGVRGFRAK
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mRNA from alignment at Ecto-sp13_S_contig1122:14735..17183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1122.1082.1 ID=mRNA_Ecto-sp13_S_contig1122.1082.1|Name=mRNA_Ecto-sp13_S_contig1122.1082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1122:14735..17183- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGTAGCCACGACTTGGTGGAGGGGGGCGCGAATATCCCGGTGAC
GAGCGAGAACAAGGAGAGTTACGTGGAACTATACGCGCAATTTCTTCTGG
TCGGGGCGGTCTCGCGGCAGATGGACCACTTCAAGCAGGGCTTTCTTAGG
GTCATGTCCGGGGCGGCTTCGATATCCTTGTTCAGGTGCGTGGTGACCGA
TTTTGGAATAGTTTGCCAACCCTACCGTCTGCGCTCCTCCGCAGTGTGAC
ACCTCCCAGTGGTGCGCAAAAAGCAGGCGGAAACGTACAGACTACCCCAC
TACGATATTGCGAGACTCTTCACGTTTCTGACCTTGGTTATTGGAAATTG
CTACGTTGTGTCGTCATCACCACCGATACGCGAGAAAAATTCACGGTCAT
ACCCCCTCCATCACAGCTTCCTCTCGTGCGTAAGCCAGCTACCGCCCCGT
AGTTGTTTCTTTTCCCAACCGCTTCTTCTTTTTTTTTTCTTGCCGAGTTT
CAGGGCTGAGGAGCTCGAAGTCCTCGTCACGGGAACGTCCGAGCTCGACT
TCGAGGAGCTCGCCAAGGCCACCGAGTACGACGGGGGCTACGTGGAGGAC
CACCACACCATACTGGCTTTCTGGCGCGCTGTGGGGCAGATGCCCGCGGA
GGAGCAAAGGCGCCTCCTCATGTTCGTCACGGGCTCGAAGAAGGTAAGAT
TTTGCTGCGTAGATTTCGTTTCGTGTTGTGCAGAAGGTCAGCCTTTGCTG
CGTAGCATCGGTTACGTGTTGTGCAGCAGTCCTACTACAGAACTTCCCTT
TGCGGGTGTGGCGCTGGGAGGGTCGACAGACAGGATACCCTCCTCCCGCT
TGTCGGTGCGGTCGGGCTGGAACAGCAGGGGCGGTGATGGTGGTCGTGGT
CGTCGTAGCTGTCGTCGTTGGTGTTGGCATTGATGTCGCGCGCCTCGACA
AGCCTGTGTGACAAAGGTGAATCGCATCTTCAGGCGCGCTAGTCAACTGT
CTGGACTTGGCCTCATGGTGGTTTGAAGCATGGTGCTGATGTTGCATGTA
TCAAATGAAGTATCCGACTTCCCTTCACGCTCATATTCCTTCACGCTTTA
TGATTAGCGGTTCATCTTGAGCTGCACGGAATGTTGGACGCTCTCCTCTT
TTCCGACCGCACCTCGAATCGGCCACTTGTTCTGATGTGCAAGTAGTACC
GGTCGTCCGCGGGACGATTGTTTGACGTCGCTTGACCCTCGTCCGTCGAA
CGATTTTCGAGTTGCGTTGGTTTAACGTCGCTTGCCCTGTTGTCCTGCAC
CGTACTCGTGTTTGTCGTGCGTCCTTTGTCCTTCAGGCCCCACTTGGTGG
GCTAGGCAAGCTCACGTTCAAGGTGCGGAGCTTTGCCCCTCTTTTCGGGT
GTTTAGATACACGGAGGTTTGCTTGCTTTTCTCCGCTACTTTGTGGTCAG
GGGTAGGGGGTCAGGGGTCCGGGTGCTCGAACGTTTCCAAGCCAAGCCAA
ACTTAAGGAGGAGGCGCAAGCGGTGCGCAAAAGATGGAGCCGCACATACG
GCGGTGGTCCTGTGCTCAGGCCTCACGGTACCAAGGGATTTGGCCGACCA
TATACCGACTGTTCAGAGTACGTCGTGGAGCATTTCTATCGTTGTCACAC
GATCCCATACGCCTTACACAGGGCGATACGTATGCTGCCTTATGAAGAAA
CCAGTACCGTCCCTGTCTTAAAAGTGCGTGCAGTCAATTATTTCACCTGC
TCCAACCAAGGTCTGGTCGCCAGAGGGGTGCCTCTTGTACGGCGTGCGCC
CTGCCTGTTGCGCGTGTTTGTGGGCAGATTTTCTTTTTTCGTGGATGCGC
GCTACATACCCGAAACCGACGTATAGAACATATTTCGATTCGTCTTCCGT
CGAATGACGACTGATGTGGATGAAACGTTATCCGGGAAGGGCTTCCATTT
GTTGCTTCCATACGTTGCAGAGAGTGAGTTCATCACTCTGGTGCATGACC
CCGGATGACCTTCGGGTAGTATGAACGAACTGCGCGTGGTTGTTCTTGTC
GTTGTTGTGTTCACTTTATAACCTGTCCGGTCTTTGCTCAGTGGTACTGT
CAACACCCGCACCTACCCAACTAACGCGGACGCCTCTCGTTGTTGAAGAG
GAAATGTGGTCGTTCTCCCACCATCCGAGCGCAATCCTAGATGTGCTTGT
TAGAAGAAGTCAGAAAAGGTGGGGACAATAGGAGCAACGAAAGGGAGTTT
TCAACGTTTGAATGGAAGTCCTTTTCCCGAAATTTTCTCCCCTGCCGGAA
CAGATCCAGCGGGCGGGACCGGACACGGACCACCTTCCTACGGCCCACAC
GTGCTTCAACACTCTCGTGCTCCCGGAGTATTCGGGAGAGGAAAAATTGA
CGAGGCTGCTGAAGAGAGCCATCACGGAGTGCGAGGGTTTCGGGCTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1122:14735..17183-

>mRNA_Ecto-sp13_S_contig1122.1082.1 ID=mRNA_Ecto-sp13_S_contig1122.1082.1|Name=mRNA_Ecto-sp13_S_contig1122.1082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1122:14735..17183- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCGGAGGAGCAAAGGCGCCTCCTCATGTTCGTCACGGGCTCGAA
GAAGGTAAGATTTTGCTGCGTAGATTTCGTTTCGTATCCAGCGGGCGGGA
CCGGACACGGACCACCTTCCTACGGCCCACACGTGCTTCAACACTCTCGT
GCTCCCGGAGTATTCGGGAGAGGAAAAATTGACGAGGCTGCTGAAGAGAG
CCATCACGGAGTGCGAGGGTTTCGGGCTAAG
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