mRNA_Ecto-sp13_S_contig11216.1076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: D8LQF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF6_ECTSI) HSP 1 Score: 157 bits (397), Expect = 8.750e-43 Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query: 7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQAKKR 258
+YMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAV+VRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQ KKR
Sbjct: 1085 KYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVMVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQGKKR 1168
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: I2CR68_NANGC (U3 small nucleolar RNA-associated protein 14 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR68_NANGC) HSP 1 Score: 87.4 bits (215), Expect = 7.070e-20 Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
V++VPYPFTSREQYERSLR+PIG EWNT+ +VR TRPAV VRAG V P+KL K HR
Sbjct: 105 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 162
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: W7U2D1_9STRA (Small nucleolar ribonucleoprotein complex subunit utp14 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2D1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 7.490e-19 Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
V++VPYPFTSREQYERSLR+PIG EWNT+ +VR TRPAV VRAG V P+KL K HR
Sbjct: 230 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A4D9D2C2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2C2_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.270e-18 Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
V++VPYPFTSREQYERSLR+PIG EWNT+ +VR TRPAV VRAG V P+KL K HR
Sbjct: 1065 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 1122
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A835YMG1_9STRA (U3 small nucleolar RNA-associated protein 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG1_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.760e-16 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
++++PYPFTS+EQYER++RQP+G EWNT SVR +TRP V+ + G + P+KL K R
Sbjct: 78 IAQIPYPFTSKEQYERAMRQPLGPEWNTPSSVRELTRPQVIFQPGAVIDPLKLPKSAR 135
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A225WXS1_9STRA (U3 small nucleolar RNA-associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS1_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.070e-15 Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVK 219
+YMV +VPYPFTSRE+YE ++R P+G +WNTSQ +T P ++ AG A+AP+ L K R A++ ++K
Sbjct: 837 KYMVKDVPYPFTSREEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLVLSKDDRKQAKKELSLK 907
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A1V9YG55_9STRA (U3 small nucleolar RNA-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YG55_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.850e-15 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARE 204
++M + VPYPFTSREQYE ++R P+G +WNT++S A+T PAV++RAG + P++L K ++ A E
Sbjct: 207 KFMCATVPYPFTSREQYEMAMRNPLGSDWNTTKSTNALTVPAVMLRAGKIIQPLQLTKEQKNQATE 272
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A397F2E1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2E1_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.010e-14 Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKL 174
++MV+ VPYPFTSREQYE ++R P+G +WNT+++ AMT P V+ RAG + P++L
Sbjct: 31 KFMVNTVPYPFTSREQYELAMRNPLGSDWNTARASNAMTVPEVMARAGKIIQPLRL 86
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A059LBX5_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LBX5_9CHLO) HSP 1 Score: 71.6 bits (174), Expect = 1.780e-14 Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQA 243
+EVP+PF SRE YERSLRQP+G ++NT + RA+TRPAV+ AG +APM+ + ARE +A AKG +A
Sbjct: 6 TAEVPFPFESREAYERSLRQPLGRDFNTEAAFRALTRPAVLKDAGAIIAPMQFSRGLAKEAREGNAA--AKGRARA 79
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A0P1A9F4_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9F4_PLAHL) HSP 1 Score: 76.6 bits (187), Expect = 1.990e-14 Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVK 219
++M+ +VPYPFTSR++YE ++R P+G +WNTSQ +T P ++ AG A+AP+KL K R A++ ++K
Sbjct: 779 KFMLKDVPYPFTSRQEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLKLSKEDRKFAKKELSLK 849 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11216.1076.1 >prot_Ecto-sp13_S_contig11216.1076.1 ID=prot_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp MVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAback to top mRNA from alignment at Ecto-sp13_S_contig11216:4742..4999- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11216.1076.1 ID=mRNA_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11216:4742..4999- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11216:4742..4999- >mRNA_Ecto-sp13_S_contig11216.1076.1 ID=mRNA_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11216:4742..4999- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |