mRNA_Ecto-sp13_S_contig11209.1068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11209.1068.1
Unique NamemRNA_Ecto-sp13_S_contig11209.1068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11209.1068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11209contigEcto-sp13_S_contig11209:149..3190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size528
Hectar predicted targeting categoryother localisation
Exons4
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.2749426-CDS-Ecto-sp13_S_contig11209:148..2431681462584.2749426-CDS-Ecto-sp13_S_contig11209:148..243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11209 149..243 +
1681462584.2831485-CDS-Ecto-sp13_S_contig11209:905..10201681462584.2831485-CDS-Ecto-sp13_S_contig11209:905..1020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11209 906..1020 +
1681462584.2932746-CDS-Ecto-sp13_S_contig11209:2232..25221681462584.2932746-CDS-Ecto-sp13_S_contig11209:2232..2522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11209 2233..2522 +
1681462584.3023574-CDS-Ecto-sp13_S_contig11209:3162..31901681462584.3023574-CDS-Ecto-sp13_S_contig11209:3162..3190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11209 3163..3190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11209.1068.1prot_Ecto-sp13_S_contig11209.1068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11209 149..3190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11209.1068.1

>prot_Ecto-sp13_S_contig11209.1068.1 ID=prot_Ecto-sp13_S_contig11209.1068.1|Name=mRNA_Ecto-sp13_S_contig11209.1068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MNPNITPGSIHIAIRLHHLFKNRHCYCGKTNSSVGQRSTKSCASLTTKKK
DRHHHGPHTPIRRGDSFCAAAAHDLSIPQKGERSMMPKAQSRGSVQAKGS
SNGSLVGSTPWSRRKYPASSLSQPSLSLFPFAYNHHEPQHHSHNIYIATR
LHHRLENSRCYFGKTNSRQFHGPAIN
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mRNA from alignment at Ecto-sp13_S_contig11209:149..3190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11209.1068.1 ID=mRNA_Ecto-sp13_S_contig11209.1068.1|Name=mRNA_Ecto-sp13_S_contig11209.1068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11209:149..3190+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCCAACATCACTCCGGGTAGTATACATATCGCCATCCGACTCCA
CCATCTATTCAAGAATCGCCACTGCTACTGTGGCAAGACAAACAGGTGAG
GCCGGTGGTACACAATCAGTACATACAGTACATGCTACATGGACATGACG
GAATTGTATTTTTGCTTCGTGCCAATCAGTGTAGTATGCGTGTTGGACTG
CTGTCCGCAGTGTTGCTGTCCCAGGGCGGTAGCTCTCCCCGTTCTTGCCG
AGGGCTGAAAAGGCAGTCTGTGGCCGAGAGTGTACCGTCTCCAAGGAGCT
GTACGTCACGGTGGTGCTCAAGCGTCCGCAGTCAAGAGCGGACACGCGCC
GGAAGCAAAAGCGAGACGTGCTCGACTGCGGTAGTGGCAAGAATGCGGTT
CAGAGGCGGTGATCGTTGTACGGCAGCATTTGTGAGATTTTCGCCGAGGC
ACGTACATGCGGACATCGCCAGTTTCTCGGTGGAGACTCGTCACTTGGAG
CTCCTCTATGAACCGGAAGCGCCAGAGGTCTTGACATGTAGACCATCACA
TGTAGATAGATAGATCAAGTTTGTTCCGCGGGAGCTCCTACAGTAGCACC
ACGCACTTAGCATGTTTGGTGATCATTTTCGATGTTTGTAGTTCATGGTT
GATCAACCCCGTTTGGTCTTCACCAGGCATTCTACCTTCTACAAGCCATG
TCCCGCAAGCTTATGCCATCGTCCGGGCCCACCATTCATTACGTCTCTGG
CAGGCAGTTCCGTCGGCCAGCGATCAACCAAATCATGCGCTTCTCTGACG
ACCAAGAAGAAAGACCGTCATCATCACGGTCCACACACACCAATCAGGCG
AGGGGATAGTTTTTGTGCGGCAGTTGAGCATGAGATCTACTGCAGCACCA
AAACGTGGGGGACGAACACGCACACAATACCACACCCCATAGCACCGAGG
CTCAATCAGCAGTGGGTCAGACTCCAGCGGTGGCTCCACGCTCAATCACT
CACCAGATTCTTCACTTTCAAGGGCGTGACACCACACGACCGCTGACACC
GCAAGTCATTGTCTGCAAAATGTCCGACAACGCTGTAGTCTAGATATCAC
GCGCCATTACGAATGACACACCGGTGTGACAACTTAGGAAGTCTTGATCA
TTTGCTTATCTCGCAAACTCGGGAAGTAGAGAGCTTGGCCAGTTAGCTAT
GTAGAAACACACAACGCACAGTTGAAGAATTTGGGGATGCGCGTACCGGT
AGGTTCATCAGACCCAGACGGCAGGTGAGCGGTTGGGTACATCATATCGT
CAGAGGCGGAGATGGAGGGGGAAATCAAAATGGATGTGCGAGCCCAAGAA
TGACAGGTGAGGGCTTCGGCGAGAGAGCCAGGCGAGCTGCTACAAGCGTC
GGATGGAAACGAATGACCTCGAGCGTCAGCGGGGAACGGTGTCAGGCCGC
ACCGAACGGAAGACGGGATGGGAGGGCGGAGGGTGCGGGACCCAGGGGGG
GGGAGGGGTGGAGATGGACAGAGACTGGCATGGTATGTACAGGAACGCAG
GATGGGACGGGTGGGACGGGGGTAAGGCGGGACGGGGGGAGGCAGGGAGC
GGGAGAGGCGAGAACGGGGGGAACGGGGAAGGAGAACACGCTGAAATGGA
TTGGAATGGACGGGTGGGGGGAGGAGAGGATGGGGGAATGAAGAGATAGG
GGGAGCGGAGAACGCGAGCGATGTAGGTGTAACTGCGAGCTGGAACGGAA
GGATGCCGGCTACCATAGAGTGGGGACTTGAAGGAGGAAGGGAATGAAAG
GATGGAAGAAAGGCTTCTTCAGCTGCTGGTGGACATTTCGCTGCCGGCCC
CTGGCTCTTCCCGCCCTTTCCGCCCCCCACGCCCGTTTTGCTTGTGTGTG
TTTACCGCGTCGTCGTAGACATTGGTTTTCTTCTTGTGGGAGTTACCACC
TCGTACTGTCAGGGTCACTGAACGCATGAACCGTACGTTCAGTGACCCTC
TCCTCTCCTCTCCTCTTCTTTCCTGTCCTCCCGCCTTCGCTATTCCCGTC
CGCTCTTTCTCTCGATGCAGCAGGTGTGGAGCAGGCCGCACATGACCTTA
GTATCCCCCAAAAAGGTGAACGATCGATGATGCCGAAAGCACAGTCCCGA
GGCTCGGTTCAAGCGAAGGGGTCGTCCAACGGTTCACTGGTCGGTTCAAC
TCCTTGGTCTAGAAGGAAATATCCAGCCTCCAGCCTCTCCCAGCCGTCGC
TCTCGCTCTTCCCCTTCGCATACAATCATCATGAACCCCAACACCACTCA
CACAACATATATATCGCCACCCGACTCCACCATCGACTCGAGAACAGCCG
CTGCTACTTTGGCAAGACAAACAGGTGAGGCCGGTGGTACAAAAGTACAT
ACATGTTGTATGGACCGACGGAGTGCCATATTTTCTTCGTGCTAATCAGT
GTAGTATACGTGTGGGACTGCTGTCTGCAGTGTTGCTGTCCCAGGGCGGT
AGCTCTCCCCGTTCTTGCCGAGGGCAGCAAAAACATTCTGTCACCGAGAG
CGTACTGTCTCCGAGGTGCTCAAGCGTCCGTAGTCAAGAAGGGACATGCG
CCGGAAACAAATGCGAGACGTGCTCGCCCTTACAGTATTGGCAAGACTGC
GGATAAAAAACAGTGATAGTTGTACAGATGTGTTAGGGACAATTTCGCCG
AGGCACGCGCAGACATCGCCAGCACTTCGTTCGGTGGAGACTCGTCGCTT
GGAGCTCCTCTATGAATCAGACGCGCCAGAGGTTGTGACATGTAGACGTT
TACATGTAGAAAGATACATAGATCTAGTTTGTTACGTTAAAGCTTCTACT
GTAACACTATACTTTCTCACTCACGTAATCTAATGGGAGATGTTTAGTGA
GCGTTTTCATGGTTAATCGACCCCGTATGGTCTTCACCAGGCATTGAGCC
TTCTATAAGCTATGTCCCGCAAGCTTATACCATCACCCGGGCCCACCATC
CATTACGGCTCTAGCAGGCAGTTCCATGGGCCAGCGATCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11209:149..3190+

>mRNA_Ecto-sp13_S_contig11209.1068.1 ID=mRNA_Ecto-sp13_S_contig11209.1068.1|Name=mRNA_Ecto-sp13_S_contig11209.1068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11209:149..3190+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCCAACATCACTCCGGGTAGTATACATATCGCCATCCGACTCCA
CCATCTATTCAAGAATCGCCACTGCTACTGTGGCAAGACAAACAGTTCCG
TCGGCCAGCGATCAACCAAATCATGCGCTTCTCTGACGACCAAGAAGAAA
GACCGTCATCATCACGGTCCACACACACCAATCAGGCGAGGGGATAGTTT
TTGTGCGGCAGCCGCACATGACCTTAGTATCCCCCAAAAAGGTGAACGAT
CGATGATGCCGAAAGCACAGTCCCGAGGCTCGGTTCAAGCGAAGGGGTCG
TCCAACGGTTCACTGGTCGGTTCAACTCCTTGGTCTAGAAGGAAATATCC
AGCCTCCAGCCTCTCCCAGCCGTCGCTCTCGCTCTTCCCCTTCGCATACA
ATCATCATGAACCCCAACACCACTCACACAACATATATATCGCCACCCGA
CTCCACCATCGACTCGAGAACAGCCGCTGCTACTTTGGCAAGACAAACAG
CAGGCAGTTCCATGGGCCAGCGATCAAC
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