mRNA_Ecto-sp13_S_contig1120.1064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1120.1064.1
Unique NamemRNA_Ecto-sp13_S_contig1120.1064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1120.1064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1120contigEcto-sp13_S_contig1120:3338..4088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size569
Hectar predicted targeting categorysignal anchor
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.8696802-UTR-Ecto-sp13_S_contig1120:3337..35431681462583.8696802-UTR-Ecto-sp13_S_contig1120:3337..3543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1120 3338..3543 +
1681462583.9112594-UTR-Ecto-sp13_S_contig1120:4052..40881681462583.9112594-UTR-Ecto-sp13_S_contig1120:4052..4088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1120 4053..4088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.880362-CDS-Ecto-sp13_S_contig1120:3543..36851681462583.880362-CDS-Ecto-sp13_S_contig1120:3543..3685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1120 3544..3685 +
1681462583.8996165-CDS-Ecto-sp13_S_contig1120:3867..40521681462583.8996165-CDS-Ecto-sp13_S_contig1120:3867..4052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1120 3868..4052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1120.1064.1prot_Ecto-sp13_S_contig1120.1064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1120 3544..4052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1120.1064.1

>prot_Ecto-sp13_S_contig1120.1064.1 ID=prot_Ecto-sp13_S_contig1120.1064.1|Name=mRNA_Ecto-sp13_S_contig1120.1064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MQQGGGGAKVSVAYHVMSCHGPLLNWRAARRRVQPGGAGVAQTPPPPRAL
CTRRGREWVVLVVVVFVVVVVAVLGRERKTRTAACLVLATSSMSGCSRRQ
QAKRRWAV*
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mRNA from alignment at Ecto-sp13_S_contig1120:3338..4088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1120.1064.1 ID=mRNA_Ecto-sp13_S_contig1120.1064.1|Name=mRNA_Ecto-sp13_S_contig1120.1064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1120:3338..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATTTGTGCGTGTTGCTCGTGGACACCACAATTCCCCCCTCCCCTTGG
CTCTTGTATCTTTTTAACCGAATTGTCGCGTGTTGTTTTTTATGGCTGAT
GTTCTCTCTTAATAGAAAGCATCGTCGGGGGGCTCTTTTCTTTCAGCGGC
GCTGGCGCCTCTGGGGGGGACAACGAGCTAGAGAGGGGTTTTTCTACTAA
TGTGGTATGCAACAGGGGGGAGGGGGCGCGAAGGTAAGTGTGGCATATCA
TGTCATGTCATGTCATGGCCCTCTTCTGAACTGGAGGGCCGCGCGCCGGC
GTGTACAACCGGGCGGGGCGGGGGTCGCCCAAACGCCCCCGCCTCCCCGC
GGTTTTCCTAGTTGGTCAACTCCGTTGCATTTCTAAATGTTTGTCCGAAA
GTCCCGGCCGTGTCTGCTACGCTGCCGTTTCGTGTTTTTTTTCCTGTTCG
TTTTAAGCGTCGGTGTGTCATTTGGATTATGCAGGTATTCAGGTCGGATT
ATTAAAGGTCGGAAGAGCCATTTTTGGAAGGGGCCCTGTGTACGCGTAGG
GGAAGAGAGTGGGTGGTGTTGGTGGTTGTTGTTTTCGTTGTTGTTGTTGT
TGCTGTTCTCGGCAGAGAGAGAAAGACAAGAACCGCCGCGTGTTTGGTAT
TAGCGACTTCGTCAATGTCGGGGTGTTCACGCCGCCAGCAAGCAAAAAGA
CGTTGGGCGGTCTGAACCCGGCCTTGGGCAGGTAAACGCTTGAGTGTGCA
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1120:3338..4088+

>mRNA_Ecto-sp13_S_contig1120.1064.1 ID=mRNA_Ecto-sp13_S_contig1120.1064.1|Name=mRNA_Ecto-sp13_S_contig1120.1064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1120:3338..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAGGGGGGAGGGGGCGCGAAGGTAAGTGTGGCATATCATGTCAT
GTCATGTCATGGCCCTCTTCTGAACTGGAGGGCCGCGCGCCGGCGTGTAC
AACCGGGCGGGGCGGGGGTCGCCCAAACGCCCCCGCCTCCCCGGGCCCTG
TGTACGCGTAGGGGAAGAGAGTGGGTGGTGTTGGTGGTTGTTGTTTTCGT
TGTTGTTGTTGTTGCTGTTCTCGGCAGAGAGAGAAAGACAAGAACCGCCG
CGTGTTTGGTATTAGCGACTTCGTCAATGTCGGGGTGTTCACGCCGCCAG
CAAGCAAAAAGACGTTGGGCGGTCTGA
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