mRNA_Ecto-sp13_S_contig112.1058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig112.1058.1
Unique NamemRNA_Ecto-sp13_S_contig112.1058.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 2.990e-133
Identity = 197/220 (89.55%), Postives = 209/220 (95.00%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            MVA+Q+F+G+AATLIASS+AFVAPMAVRS A   SSS+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 5.220e-130
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 742
            MVASQMF+GTAA LIASS+AFVAP+AVRS A   ++S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 3.980e-121
Identity = 183/220 (83.18%), Postives = 199/220 (90.45%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            + +S MF+GTAATLIASS+AFVAPMAVRS A   S+S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 6.420e-115
Identity = 187/220 (85.00%), Postives = 189/220 (85.91%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            MVASQMFIGTAATLIASS+AFVAPMAVRSV TTPSS  LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 7.510e-113
Identity = 216/392 (55.10%), Postives = 219/392 (55.87%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVA-TTPSSSSLKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            MVASQMFIGTAATLIASS+AFVAP+AVRSVA TTPSSSSL MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 9.290e-108
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 2 
Query:  263 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 4.570e-106
Identity = 164/218 (75.23%), Postives = 189/218 (86.70%), Query Frame = 2 
Query:   92 ASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            +S MF+GTAATLIASS+AFV PMAVRS A   S+S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 3.430e-86
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 2 
Query:  263 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 742
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 9.900e-86
Identity = 134/213 (62.91%), Postives = 169/213 (79.34%), Query Frame = 2 
Query:  107 IGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            +G A+   AS  AF+ P    +++  P+S++ +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV P  I G
Sbjct:   60 VGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 6.960e-83
Identity = 151/220 (68.64%), Postives = 155/220 (70.45%), Query Frame = 2 
Query:   86 MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 745
            MVASQMFIGTAATLIASS+AFV PMA+RSVA+TPSSS  KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                                                              EDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE--------------------------------------------------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig112.1058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI2.990e-13389.55Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI5.220e-13089.50Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI3.980e-12183.18Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE6.420e-11585.00LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE7.510e-11355.10LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S5_ECTSI9.290e-10898.76Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI4.570e-10675.23Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI3.430e-8681.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI9.900e-8662.91Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE6.960e-8368.64LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig112contigEcto-sp13_S_contig112:6342..10530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score428.7
Seed ortholog evalue1.6e-117
Seed eggNOG ortholog2880.D7G7S2
Model size1519
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionChlorophyll A-B binding protein, plant
Ec32 orthologEc-06_000530.1
Cds size663
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig112.1058.1prot_Ecto-sp13_S_contig112.1058.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig112 7113..10445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.4823976-UTR-Ecto-sp13_S_contig112:6341..71121681462583.4823976-UTR-Ecto-sp13_S_contig112:6341..7112Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig112 6342..7112 -
1681462583.5349944-UTR-Ecto-sp13_S_contig112:10445..105301681462583.5349944-UTR-Ecto-sp13_S_contig112:10445..10530Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig112 10446..10530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.4959445-CDS-Ecto-sp13_S_contig112:7112..73881681462583.4959445-CDS-Ecto-sp13_S_contig112:7112..7388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 7113..7388 -
1681462583.507981-CDS-Ecto-sp13_S_contig112:7935..80191681462583.507981-CDS-Ecto-sp13_S_contig112:7935..8019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 7936..8019 -
1681462583.5182629-CDS-Ecto-sp13_S_contig112:8217..83401681462583.5182629-CDS-Ecto-sp13_S_contig112:8217..8340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 8218..8340 -
1681462583.5269725-CDS-Ecto-sp13_S_contig112:10265..104451681462583.5269725-CDS-Ecto-sp13_S_contig112:10265..10445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 10266..10445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig112.1058.1

>prot_Ecto-sp13_S_contig112.1058.1 ID=prot_Ecto-sp13_S_contig112.1058.1|Name=mRNA_Ecto-sp13_S_contig112.1058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MVASQMFIGTAATLIASSSAFVAPMAVRSVATTPSSSSLKMSAGSDYVAT
LPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVA
EQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLA
MIGIAGMLAQELVNPADILG*
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mRNA from alignment at Ecto-sp13_S_contig112:6342..10530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig112.1058.1 ID=mRNA_Ecto-sp13_S_contig112.1058.1|Name=mRNA_Ecto-sp13_S_contig112.1058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig112:6342..10530- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCATCCTCCCACAACTACAACACACTCTCATCCCTCCTTCCAACAGC
CTATCCCCCAACACACACCCCACCTACTAAGCAAGATGGTCGCCTCCCAG
ATGTTCATCGGTACTGCCGCCACCCTCATCGCCTCCTCATCTGCTTTCGT
CGCACCGATGGCCGTGCGATCTGTTGCCACTACTCCGTCCTCCTCGAGCC
TGAAGATGAGTGCTGGATCGGACTACGTCGCGACCCTGCCCGGAGCTCCT
TTCTCTGACGGAAAGGTGATGATGACGTCTATGTGGTCGCCTGAGGAAAA
CCCAGGGTGTGAGCTCTCGAGTATCACCCAAACGTGGTGCTTTGTACTGC
TCTAGAGTATCCTCAGAGTCGTTGTCTATCGCGACTTAAGTGCTTAACCG
AAGGATGTCGTCAGGTTTCATGTGGATTTACAGCAGTTGCATATGTACAC
AGCAATCTTGTGGACGTACTGCTATACATGTACCGACGTGAACACGTGAG
GTACTAGGTATGGGCGGGGGAAATGAGCCGCGTGGTGTGATTCACTACCT
TACAGTAGTCTTGTCTGCGATGCTGATGGTGCACGAATCCCGACACACGC
CAGCGTGAATCGTTTGTAGTGCAGCTACGCGTGCACGGTAGAGGGACAGC
AGGCGTACGACGGGAGCGACGATGGTTGTATGTCCGGCAACTGTTCAAAA
CTTAACATACAAACTGTTGTTTCTTTTCCGTTTTGATGACATGCACGAAA
CAAAACACAACGTGAAGTCTTCCCGCTGTGCGGACGCAAACATGCAGCAC
GTACATGTGGGCATGCGGAAGAAGCACGCATGCGGCATACACCTGGCGGC
GAGCGCATCACACATCACACCGTGGAGGAGCATGACCAGCAGCGCAGACA
TAGAGTTGTGACACGACAGATGGCAAATATTGCGTCAGGTTCACAACTTG
CCCGCCACATTCCGAGTTTCCCGCCCAAGTGAAAGCAATCAGTCCAGAAT
GAACCAAAAACAACAAAGCCGGTTGATGGTCATGACATCATGGATTTCAT
GCGAGAGGCCCGCCTGCAGCAGCAAAACAGCATGCAGTGCACGGCTTTTT
TTTGCGAAGACAGTCAGTAGAGCGGCGCGAGTACGCAATCTGAACCAATC
CCGCGGGGAACCATCCTCATAACGCCAGCAGAAGACCCTCACGCCCTCGA
CAGATTGTCTGGATGATGGTAGGTGTGATATGGACTTGGGAAGGTGCATT
ATTTGTGTGTTCAACTAACTGTGATAATTGGTCTACTCTTTTTGGAGCAG
TCCGTCGGTTATGGACCCACTCAACATCAATTGACACCCGCCAGGTTACA
CATGGCGCAAGCCCACAGTATGCCCACGGTGCACAGGTCGTATAGGCCAG
GCCCCTCCTGGTTTTCATAGCTGGTCTCAGACCAGCGTCTCAGCGGTGAT
GCGTTTGTTTGTGCGTCTCTCCCTAGGCATTTCTTGTCCTGGTTCGAATC
GCGCTCGCGCGCGTCATCTCCGCTTTTGTCAACGCTTTTCCGCGTAGAAA
CCACGGGTTGGGGAGCAAGATCTACGAAATTTGGGCACACATGCCTGTGA
AGGACGGCCGTCTATTGCCGAAGCACGACCAAACCGGTGTGAAGAAGAGC
GCGCTATTGTTCTTTTTCCTCTCAAGCGGACAAATCGTCAATCGGTGCCC
TATAGATCTCGTTCTGGTCCCAAAGGTTGCCTATATCGGCTTCCCGGAAA
CCAAGTGTTGGGGCCCCTGTATCGCGCGGCGCAACTTTGACCGATACATG
GAGCCTTTTTTTCCCTCCTGGGGACGAAGAGAAAAAATCCGCGCTTCACC
CTCCGCGGCTCATTATAATGACACGGACAGATGTGACGAATGTCTTCTAT
TTTAGGTGAGCGGAGACACGCAAGTGCCGATCCACGCGCATTTACGTCTG
TACACTATGTGGCTTTGGCGCATCCAACAGCATGTATTCATTCGTCGTCG
ATGCACCTCTGAAACCATCCATCTGTTGTAATGCCGCGATGTCCAAGGTG
TCCTAACCACGACGGAGAGATTGAGAGTCGACACATCAACCACGTTGCCG
TACCTCTGCGCACATAAGGATTTCCGTGACGAAGTTGTCTCACCCGTTGC
GGTCTTTGATCACCGCTGTCCCAACGCTCTCGTGCCTCAGATCTTCGACC
CCCTGGGCCTTTCCGACGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGC
GAGGCCGAGATCAAGCATGGGCGAGTGGCAATGCTTGCGTCTCTCGGTGT
CATCGTCGCAGAGGTGAGGCCAGCATACCCCCGTCAACATATTTGCGAAC
GATGGACATGAAGCCTCAGAGAGGGTGGCATATGTTTTCCAGTGACACTA
CACTCTACTGTGCAGATATAACACCCAATCGAGTCCTTCGTGTTAATCAT
GATTTTCGTCCAACCGCATCGCATTGTGTTCGCTTTCGTCTGTCGCCTCT
GGATTCTTTAGCAATACCACCCTTTCTTCATGGGCCCAGACTACATTGGT
CCCGCCGTGGACCACTTCCAGGAGATCAGCGCACAATTCCCTGAGGTAAG
GCTGCGTGTTAGTGAAAGCACATTTGGTTAGATAGTCGCTGATGATATTT
GAGACAAAGAGGTAGTCGAATCAAACCAGCCGACTCTGTCTGCGCCTCTG
TTCAAATCACAATTCACATGTACACCAGCGCTCGAGAAGTTGCAAGCACG
TGGTTCCAGCACAAATTTCCGATCCGCCCCCTCCAACACCGAAAACGAGT
CCAAGGGTGGTATGATCCCACTCCCACCACAGCAAGACACCATGTGCACA
CTTCGAAAGGAAATACGACTGAAGTTGTTCGCATTGCTGTGTCGCCACCG
TTATGATATCAGTTGGTTGACCACCCTGTTGTACGAAGTCATCCGCAGAT
TGACCCACTTATCAAGTGCCCTCCTTCCGCAGTACCTGGTCGAGCGTTGT
TCCTCCTGGCACAAAGATACGGTACTGTCCACTGTGACACCCTTCCCTCG
ACACCACGTGGTCGACGAGTGCCTTTTCTTCACACAACCATCCCCTCTCG
TGTGTCTCTCTGCCCGTCATTCACGTGTCTCTCCAACCTCAGTTTTGGGC
GTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCG
CCTTCGACACCCCCAGCGCGGTCACCGGCGAGGGAGGCCTGAAGGAGGAC
TACATCCCCGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGA
CGAGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTT
TGGCCATGATCGGCATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCG
GCCGACATCCTCGGCTAAGTTGTTTTACTTTGTCGGTTGGGATAACCTGG
GTGTATGAATCTAGTGTGTTCGTGTGCTTTAGTCAGTGTTTCATGTATCC
TTCGATCCGAGAGGATGGAAGGAAGTTGGGAGGTGCTACCTTCCGTATTG
TTGAGGCTTTGTCTCGCCATCTAAGATGCTGGTGCGATGCGGATGTTCCT
TGATGTTTACGTTTTCGGCTGGAATTTGCTTTTCTACCGTAGGATTGCTG
AGTGTCAACGGTGATATTGGCCTTCCAATCTTTTGGTTCTTCGATGCATA
CCACCGATGGTGATGTCGGCGGAGGGAAGAACTTGGGTCGTTGTTGTCAT
TACAGTGAGAAAGTTTGCTTGACGTTGTTTAGCCGAGGCTATTCCCGCTC
AGGCGCAAGAATAACTTTGTCTCATGTTTTCCTTTAGACGACCTTCGCCA
TTTGGCTGTTGCCGTTGTAGTATGACTTGACGATCCTGGTGTTGCCTAAA
CTCGAAAGGTCGAGCCGGTGGTGATAGAAGAGTAGTTGTAGCATAGAGTG
TTGCGCGCCGGAATGTCGTGTTTGCTAGTCTGACGTGTGTGGTGAAAAAG
AGAGTGTAGCACTTTCCACTTGTGTAGCCAAAGCTCTCGTATAGGCTTGC
CGCCTCGCGTGTGATCGTTGGTTTGTGGCACCTGACACGGATGTTCCACC
TTGTAGCACCTTGTAGCTTGCGTGCAGTGGCGTCCAAGGTGTGCCTTGTC
GAGGCGTTGCGCGACGCGTGCGCCATTGGTTCGGATTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig112:6342..10530-

>mRNA_Ecto-sp13_S_contig112.1058.1 ID=mRNA_Ecto-sp13_S_contig112.1058.1|Name=mRNA_Ecto-sp13_S_contig112.1058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig112:6342..10530- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCCTCCCAGATGTTCATCGGTACTGCCGCCACCCTCATCGCCTC
CTCATCTGCTTTCGTCGCACCGATGGCCGTGCGATCTGTTGCCACTACTC
CGTCCTCCTCGAGCCTGAAGATGAGTGCTGGATCGGACTACGTCGCGACC
CTGCCCGGAGCTCCTTTCTCTGACGGAAAGATCTTCGACCCCCTGGGCCT
TTCCGACGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGA
TCAAGCATGGGCGAGTGGCAATGCTTGCGTCTCTCGGTGTCATCGTCGCA
GAGCAATACCACCCTTTCTTCATGGGCCCAGACTACATTGGTCCCGCCGT
GGACCACTTCCAGGAGATCAGCGCACAATTCCCTGAGTTTTGGGCGTTCT
CCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCCTTC
GACACCCCCAGCGCGGTCACCGGCGAGGGAGGCCTGAAGGAGGACTACAT
CCCCGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGACGAGG
CGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTTTGGCC
ATGATCGGCATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCGGCCGA
CATCCTCGGCTAA
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