mRNA_Ecto-sp13_S_contig112.1057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig112.1057.1
Unique NamemRNA_Ecto-sp13_S_contig112.1057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 1.740e-130
Identity = 199/222 (89.64%), Postives = 209/222 (94.14%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSS-LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVA+Q+F+G+AATLIASSTAFVAPMAVRS A  P S SS LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAA--PASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 7.440e-128
Identity = 199/221 (90.05%), Postives = 207/221 (93.67%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSS-LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 832
            MVASQMF+GTAA LIASSTAFVAP+AVRS A  P S +S LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAA--PASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 5.460e-119
Identity = 184/221 (83.26%), Postives = 198/221 (89.59%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            + +S MF+GTAATLIASSTAFVAPMAVRS A    S S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 1.380e-113
Identity = 216/392 (55.10%), Postives = 218/392 (55.61%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMFIGTAATLIASSTAFVAP+AVRSVAIT PS SSL MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 1.370e-111
Identity = 186/221 (84.16%), Postives = 187/221 (84.62%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMFIGTAATLIASSTAFVAPMAVRSV  TP S   LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTP-SSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 3.710e-107
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 2 
Query:  353 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 3.280e-103
Identity = 164/218 (75.23%), Postives = 186/218 (85.32%), Query Frame = 2 
Query:  182 SQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            S MF+GTAATLIASS AFV PMAVRS A    S S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.200e-85
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 2 
Query:  353 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 832
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 1.090e-83
Identity = 134/214 (62.62%), Postives = 166/214 (77.57%), Query Frame = 2 
Query:  194 IGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            +G A+   AS  AF+ P      A   P+ ++ +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV P  I G
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSAR--PTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 4.160e-80
Identity = 151/221 (68.33%), Postives = 153/221 (69.23%), Query Frame = 2 
Query:  173 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMFIGTAATLIASSTAFV PMA+RSVA TP S S  KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                                                              EDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTP-SSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE--------------------------------------------------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig112.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.740e-13089.64Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI7.440e-12890.05Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI5.460e-11983.26Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.380e-11355.10LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE1.370e-11184.16LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI3.710e-10798.76Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI3.280e-10375.23Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI1.200e-8581.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.090e-8362.62Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE4.160e-8068.33LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig112contigEcto-sp13_S_contig112:48..2920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score423.3
Seed ortholog evalue6.9e-116
Seed eggNOG ortholog2880.D7G7S2
Model size1656
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Cds size666
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig112.1057.1prot_Ecto-sp13_S_contig112.1057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig112 220..2102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.396378-UTR-Ecto-sp13_S_contig112:47..2191681462583.396378-UTR-Ecto-sp13_S_contig112:47..219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig112 48..219 +
1681462583.451769-UTR-Ecto-sp13_S_contig112:2102..29201681462583.451769-UTR-Ecto-sp13_S_contig112:2102..2920Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig112 2103..2920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.4095755-CDS-Ecto-sp13_S_contig112:219..4021681462583.4095755-CDS-Ecto-sp13_S_contig112:219..402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 220..402 +
1681462583.4197059-CDS-Ecto-sp13_S_contig112:874..9971681462583.4197059-CDS-Ecto-sp13_S_contig112:874..997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 875..997 +
1681462583.4337926-CDS-Ecto-sp13_S_contig112:1215..12991681462583.4337926-CDS-Ecto-sp13_S_contig112:1215..1299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 1216..1299 +
1681462583.4426336-CDS-Ecto-sp13_S_contig112:1826..21021681462583.4426336-CDS-Ecto-sp13_S_contig112:1826..2102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig112 1827..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig112.1057.1

>prot_Ecto-sp13_S_contig112.1057.1 ID=prot_Ecto-sp13_S_contig112.1057.1|Name=mRNA_Ecto-sp13_S_contig112.1057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MVASQMFIGTAATLIASSTAFVAPMAVRSVAITPPSCSSLKMSAGSDYVA
TLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIV
AEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTA
FDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL
AMIGIAGMLAQELVNPADILG*
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mRNA from alignment at Ecto-sp13_S_contig112:48..2920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig112.1057.1 ID=mRNA_Ecto-sp13_S_contig112.1057.1|Name=mRNA_Ecto-sp13_S_contig112.1057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig112:48..2920+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGTGCTTCGAGTCGTGTCACGAGTCTCTTCTTGCTCATCACGCCACA
ATCTCGCCGCATCTTTATCCACCCCGACGCTTGTCCCTCATTCTCCCACA
AACTCAACACGCCCTCATCCCGCCTTCCAACAACAACTAATCTCTCAACA
CACACCCCACCTACTCAGCAAGATGGTCGCCTCCCAGATGTTCATCGGCA
CTGCCGCCACCCTCATCGCCTCCTCGACTGCCTTCGTCGCACCGATGGCC
GTGCGATCTGTTGCCATCACTCCTCCTTCATGCTCGAGCCTCAAGATGAG
CGCCGGTTCGGACTACGTCGCAACTCTGCCCGGAGCTCCCTTCTCTGACG
GAAAGGTGAGGACGCGTGTGTGATTGCGTGAGCCAACACCCCAGGTGGTC
CTGTGTAGTCTAGGTCTGTAGGCTACAACACCCTTGGGACCGCGGTCTCG
AGCAACGTTTGTCCGTGTCCGAAAGCTCGCTCGATACAGAGTAGTGTAAC
ACCGACCAGTAGTATTTTGTGGACGTACACCTTCAGTACCAACATGAACA
TGTGGTCTGGTTGCATCAGTAACAATGGCGAATAACGCGCGCATCGCTTC
AAGGGTTATCTGTTTGTGTGGTACAGTTGTCATGCGGTTATGTACAGCAT
CCTGGGCGCACATACAATCAACTTCGTCATGCCGCTATCCAAATAATACT
AACTGGATCCATGCCGGAAAGACTGGGAGTTCGACAGATGAGTCTATCTA
TCGTTTTCCCTAGTGAGTGAAATTGTCTCACCCGTTGCGGTATTCGATCA
CCGCTGTCCAACGCCCTCGTGCCTCAGATCTTCGACCCCCTGGGCCTATC
CGACGGCGCCGCCCCCGGCGACATCAAGAAGTGGCGTGAGGCCGAGATCA
AGCATGGGCGTGTGGCCATGCTTGCGTCTCTCGGTGTCATTGTGGCAGAG
GTGAGGAAAACCGTGCACGCGTGGATGGTGGGAACACGATTGACACATAC
AGAAGGTTCAGAGAGGGTGGCATATTGTCTTGTATTCCCCCGCCTTACTT
CTATCCTACCGTAGACGCAACACCTGTTGTAATCGAATCCTTGGTGTTGC
TCATGATTTTTCGTCCCGCCTCATTGCATGGTGTTCGCTCTCCTCCCTGT
CGCCGTTGCCCACTCCAGCAATACCACCCGTTCTTCATGGGACCCGACTA
CATTGGCCCCGCCGTGGACCATTTCCAGGAGATCAGCGCGCAATTCCCTG
AGGTGAGACTGTGGGTTGGGGGAAACACATTTGATGTGCACGGCCCTGGA
AAAGTGGGATATGACGAGTTGTGCTTCGTGCGACTCGAGTAGCATTCAAT
CACCTGTAGACCGACCATTGCTGGAGAAGGTACACACGTGATTCCAGCAG
CGAATTACTTGTCCTAACCTTTCAACACAACACCGAAAACGAGTCTAAGG
GTGGTATGATCTACTTCCACCCCAGCAAGACACCATCTGCACACTTTGAT
AAAAAAATATTTATTCCCAATGTGTTTCTGCTGCCGTGCTGATGTAAGTT
GGTTGACCAGCCTGTTGTACTAAGTCTTCCGACAGGTTGACCCACTTACC
AAGTGCCCTCCTTCCGCAGTACCTACTCGAGCGTTGTTCCTGCCGGCACA
AGGACACGGTACTGGCAACGATGCCGACCTTCCCTCGACACCACGTGGTC
GACGAGTGCCTTTTCTTCACACAACCATCCCCTCTCGTGTGTCTCTCTGC
CCGTCATTCACGTGTCTCCAAAACCTCAGTTCTGGGCGTTCTCCCTCCTG
GGCATGGCCTTCATCGAGTACAACACCATCATGACCGCCTTCGACACCCC
CAGCGCGGTCACCGGCGAGGGCGGCCTGAAGGAGGACTACATCCCCGGAG
ACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGACGAGGCGGCTCTG
GACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTTTGGCCATGATCGG
CATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCGGCCGACATCCTCG
GCTAAGTTGTTTTACTTTGTCGGTTGGGATAACCTGGGTGTATGAATCTA
GTGTGTTCGTGTGCTTTAGTCAGTGTTTTATGTATCCTTCGATCCGAGAG
GATGGAAGGCAAACGACACCAATTGTAGGGCCTTGTCCCGCGATCTAAGA
TGCTGGTGTGGTTCCGTTTCGTTGATGCTTACGTTTCCGGCTTCAAGTCA
CTTCTGTAGGGGTTTTGTTTTGAGTGTTGACGGTTGGACTTGTCGACTCT
CACGGTTTCTTTCTCCACCGCTAGCAATATCGGCGAAGGGAGAAATCTGT
ATCGCTCTTGCCATGTGCGGTGGGACAGGTTTTGCTTGATGTTGTTCCAG
CTGTTTTTTTCTTTGGACGAGCTTCGCGGGTTGGCTGTTCGTGGTTTACA
ATCTATGTCCGATTCTAGTGTCCGAGACGGAATGCTACCTACACCCACGA
CAGCTCTCTTGTCGAGATTGGGAAGGTCGAGCATGAGAAGTAATGAAAAC
ATTAGACGCGTTGTGTCGTATTCGAGACTCCCGAATTCCGCGTTTGCGAG
TCTGACGTGTGTGGTAACAAGAGAATGGCAGCATGTTCATATATGTAGCC
AACTTTTTCGTACATGCTTGCCTTTTCTTGGTTTGTCGGGATTATTTTGT
TAAGTGGCTCGTGAAGGTATTTGTTGTAGATTATTTGTGTGAAGTGGGGC
GGTTGTTTCTTGTTGTAGCACCTGGCACCGATATCCCACTCTGCGGCTTG
CGTTCAGTGGAGTCCGACGTGTGTCGCACCGAGATGGTGTACTACGCCCT
GGTTTCTTTTTGTGGTTTGTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig112:48..2920+

>mRNA_Ecto-sp13_S_contig112.1057.1 ID=mRNA_Ecto-sp13_S_contig112.1057.1|Name=mRNA_Ecto-sp13_S_contig112.1057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig112:48..2920+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCCTCCCAGATGTTCATCGGCACTGCCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGATGGCCGTGCGATCTGTTGCCATCACTC
CTCCTTCATGCTCGAGCCTCAAGATGAGCGCCGGTTCGGACTACGTCGCA
ACTCTGCCCGGAGCTCCCTTCTCTGACGGAAAGATCTTCGACCCCCTGGG
CCTATCCGACGGCGCCGCCCCCGGCGACATCAAGAAGTGGCGTGAGGCCG
AGATCAAGCATGGGCGTGTGGCCATGCTTGCGTCTCTCGGTGTCATTGTG
GCAGAGCAATACCACCCGTTCTTCATGGGACCCGACTACATTGGCCCCGC
CGTGGACCATTTCCAGGAGATCAGCGCGCAATTCCCTGAGTTCTGGGCGT
TCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCC
TTCGACACCCCCAGCGCGGTCACCGGCGAGGGCGGCCTGAAGGAGGACTA
CATCCCCGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGACG
AGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTTTG
GCCATGATCGGCATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCGGC
CGACATCCTCGGCTAA
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