mRNA_Ecto-sp13_S_contig11184.1045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11184.1045.1
Unique NamemRNA_Ecto-sp13_S_contig11184.1045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11184.1045.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.200e-48
Identity = 123/133 (92.48%), Postives = 124/133 (93.23%), Query Frame = 1 
Query:    1 GLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLRCTIVVAWHTLGGPSPDHWVYVRPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGTKTEPDPSAIG 399
            GLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLRCT VVAWHTLGGPSPDHWVYVRP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SSPGT+ EPDPS IG
Sbjct: 2314 GLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLRCTFVVAWHTLGGPSPDHWVYVRPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SSPGTRAEPDPSTIG 2444
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11184.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K0_ECTSI2.200e-4892.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11184contigEcto-sp13_S_contig11184:3553..4326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size403
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462582.4170156-CDS-Ecto-sp13_S_contig11184:3552..37221681462582.4170156-CDS-Ecto-sp13_S_contig11184:3552..3722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11184 3553..3722 +
1681462582.4304774-CDS-Ecto-sp13_S_contig11184:4094..43261681462582.4304774-CDS-Ecto-sp13_S_contig11184:4094..4326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11184 4095..4326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11184.1045.1prot_Ecto-sp13_S_contig11184.1045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11184 3553..4326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11184.1045.1

>prot_Ecto-sp13_S_contig11184.1045.1 ID=prot_Ecto-sp13_S_contig11184.1045.1|Name=mRNA_Ecto-sp13_S_contig11184.1045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
GLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPL
FELPTLRCTIVVAWHTLGGPSPDHWVYVRPPASSSSSSSTRLAGTSSGTA
ASSTPKQQQQQQQQQAPPSSPGTKTEPDPSAIGH
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mRNA from alignment at Ecto-sp13_S_contig11184:3553..4326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11184.1045.1 ID=mRNA_Ecto-sp13_S_contig11184.1045.1|Name=mRNA_Ecto-sp13_S_contig11184.1045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11184:3553..4326+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTTGAAGGGTTGGAGAAGGGGAAGACGCTGATGGTGACGTGCGTCGT
GCTGAGGGTCGGGTGGGCGGGCGCCGGGCGAGTGGCGCTGGAGACGACGG
GCTTCGGAGTTGAGGCGTCGCCGCCCCCCGCTCCGGGGCTCCCCCCGCTG
TTCGAGCTCCCCACACTGAGGCGAGTGAGGGTTGCGGCGGTTTTGTTTTG
GGACGGGTCAACCCCTGCGTTAAAAGAGGGCTGTTGATTTGGGAAGACCT
AGACAGCTCACCAGGGCTTTGACCGCTCATTTTCCCGTATCCCAAGAAAT
GGTTCAGAAAATCACCCACAGACACGAAAAAAACGGCGGTTGAGAACCCT
TCCCCCCTTTCCCCTCATCTTGAACTCTGCGCTTGCCACCCCCCCCCTCC
CGATGGGTTGGTAAATCAACGATTGAAATGGCACGATAAAACGACACCCA
AGAATGTTTCCCCCCCTTTTGTCCGCGTACGCCCCTCCCTCCGTTCTTTT
TCCGGCCTCGTCACGGTACCGGGTTCTGGCATACCGAAACAGGTGCACGA
TCGTCGTCGCCTGGCACACCCTGGGGGGACCCTCCCCGGACCACTGGGTG
TACGTTCGCCCCCCGGCGTCATCATCGTCCTCCTCCTCCACCCGGCTAGC
GGGAACATCATCCGGCACCGCAGCTTCCTCCACCCCGAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAGCACCACCGTCCTCTCCGGGGACGAAGACAGAG
CCAGACCCGAGCGCGATCGGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11184:3553..4326+

>mRNA_Ecto-sp13_S_contig11184.1045.1 ID=mRNA_Ecto-sp13_S_contig11184.1045.1|Name=mRNA_Ecto-sp13_S_contig11184.1045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11184:3553..4326+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTTGAAGGGTTGGAGAAGGGGAAGACGCTGATGGTGACGTGCGTCGT
GCTGAGGGTCGGGTGGGCGGGCGCCGGGCGAGTGGCGCTGGAGACGACGG
GCTTCGGAGTTGAGGCGTCGCCGCCCCCCGCTCCGGGGCTCCCCCCGCTG
TTCGAGCTCCCCACACTGAGGTGCACGATCGTCGTCGCCTGGCACACCCT
GGGGGGACCCTCCCCGGACCACTGGGTGTACGTTCGCCCCCCGGCGTCAT
CATCGTCCTCCTCCTCCACCCGGCTAGCGGGAACATCATCCGGCACCGCA
GCTTCCTCCACCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCACC
ACCGTCCTCTCCGGGGACGAAGACAGAGCCAGACCCGAGCGCGATCGGCC
AC
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