mRNA_Ecto-sp13_S_contig11183.1044.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11183.1044.1
Unique NamemRNA_Ecto-sp13_S_contig11183.1044.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11183.1044.1 vs. uniprot
Match: A0A6H5K8C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.020e-13
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:   53 KKERRAPATMTDVAGMEGVAGAVDAAGTLDIIVAIGASGSDARISPQVALHT 208
            ++ER+APATM DVAGMEGVAG V AA  LD+  AI ASGS ARISPQVALHT
Sbjct:   13 QRERKAPATMADVAGMEGVAGTVGAAEKLDVTAAIRASGSAARISPQVALHT 64
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BLAST of mRNA_Ecto-sp13_S_contig11183.1044.1 vs. uniprot
Match: A0A6H5KIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.560e-10
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = -3 
Query:  221 WVSEYSHVGTDNKTQTEKCGCRAAPGKRSLCAR 319
            W+SEYS+VGTDNKTQTEK GC+ APGK+SLC R
Sbjct:  269 WLSEYSYVGTDNKTQTEKYGCKPAPGKKSLCVR 301
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BLAST of mRNA_Ecto-sp13_S_contig11183.1044.1 vs. uniprot
Match: A0A6H5KUW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.440e-8
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = -3 
Query:  221 WVSEYSHVGTDNKTQTEKCGCRAAPGKRSLCAR 319
            W+SEY +VGTDNKTQTEKCGC+ APGK++L  R
Sbjct:  407 WLSEYPYVGTDNKTQTEKCGCKPAPGKKNLGVR 439
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BLAST of mRNA_Ecto-sp13_S_contig11183.1044.1 vs. uniprot
Match: A0A6H5K5E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.430e-7
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = -3 
Query:  227 SEYSHVGTDNKTQTEKCGCRAAPGKRSLC 313
            +EY ++GTDNKTQTEKCGC+ APGK+SLC
Sbjct: 1045 TEYCYLGTDNKTQTEKCGCQPAPGKKSLC 1073
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11183.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8C7_9PHAE1.020e-1375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIA6_9PHAE6.560e-1078.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUW9_9PHAE1.440e-872.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5E1_9PHAE3.430e-775.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11183contigEcto-sp13_S_contig11183:2041..2363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462582.3881607-CDS-Ecto-sp13_S_contig11183:2040..23611681462582.3881607-CDS-Ecto-sp13_S_contig11183:2040..2361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11183 2041..2361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11183.1044.1prot_Ecto-sp13_S_contig11183.1044.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11183 2041..2361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11183.1044.1

>prot_Ecto-sp13_S_contig11183.1044.1 ID=prot_Ecto-sp13_S_contig11183.1044.1|Name=mRNA_Ecto-sp13_S_contig11183.1044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
LPSGCLCGCLLTNGSCRQKRTEGSGYNDRCCRNGRCSRSSGRSRNAGYNS
SDRSLRFRRANQSTGGLAHNASLTSRRDSSYPGPLCNHISPFASCCRCQR
ESTQTPI
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mRNA from alignment at Ecto-sp13_S_contig11183:2041..2363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11183.1044.1 ID=mRNA_Ecto-sp13_S_contig11183.1044.1|Name=mRNA_Ecto-sp13_S_contig11183.1044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11183:2041..2363+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCTAGCGGCTGCCTGTGCGGCTGCCTGCTGACTAACGGCTCATGCCG
CCAAAAAAGAACGGAGGGCTCCGGCTACAATGACAGATGTTGCAGGAATG
GAAGGTGTAGCAGGAGCAGTGGACGCAGCAGGAACGCTGGATATAATAGT
AGCGATCGGAGCCTCAGGTTCCGACGCGCGAATCAGTCCACAGGTGGCCT
TGCACACAATGCCAGCCTCACCTCGCGCAGAGACTCCTCTTACCCGGGGC
CGCTCTGCAACCACATTTCTCCGTTTGCGTCTTGTTGTCGGTGCCAACGT
GAGAGTACTCAGACACCCATAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11183:2041..2363+

>mRNA_Ecto-sp13_S_contig11183.1044.1 ID=mRNA_Ecto-sp13_S_contig11183.1044.1|Name=mRNA_Ecto-sp13_S_contig11183.1044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11183:2041..2363+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCTAGCGGCTGCCTGTGCGGCTGCCTGCTGACTAACGGCTCATGCCG
CCAAAAAAGAACGGAGGGCTCCGGCTACAATGACAGATGTTGCAGGAATG
GAAGGTGTAGCAGGAGCAGTGGACGCAGCAGGAACGCTGGATATAATAGT
AGCGATCGGAGCCTCAGGTTCCGACGCGCGAATCAGTCCACAGGTGGCCT
TGCACACAATGCCAGCCTCACCTCGCGCAGAGACTCCTCTTACCCGGGGC
CGCTCTGCAACCACATTTCTCCGTTTGCGTCTTGTTGTCGGTGCCAACGT
GAGAGTACTCAGACACCCATA
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