mRNA_Ecto-sp13_S_contig11182.1043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11182.1043.1
Unique NamemRNA_Ecto-sp13_S_contig11182.1043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: D7FKN8_ECTSI (IPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN8_ECTSI)

HSP 1 Score: 996 bits (2576), Expect = 0.000e+0
Identity = 587/700 (83.86%), Postives = 609/700 (87.00%), Query Frame = 1 
Query:    1 MGSELLPLGPVGSWAGVGGSGGGFGGEHYASEGLPSILDAIPAWKRPRLLKGLQERETEYISVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAERPEGEGRSNGNASSAHPPPAKVGNADSVCAETFAIEEGDGMEDVFAIGFQELVDLNAVNVAVDIKSQASEGHHFDEELSQKRSVEWEERVLSSLNLAALHQANKRRRRASETPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGDVLEVASVASLPETDDGTQQDEGAEVGLSLPHAAAGDTATSPSATERANFRRDEPSKSYGPASLGDAGGVSHDGTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPPLPGAEWRRPQQQPQRRMNSFRGXXXXXXXXXXXXXXXXVXXXXXNPLXXXXXXATVGKGRASEPGPGSLNYRRKLSVAAPSLSGILSPRYKPNGDSSFASTSSKRAVSSSCSPKITASRGGDTNASCGCLSLPTSPDYTKQRRARHQRRVQRGRAASFCRELSPVQDDGSRGRRVGPRRRNSMCMSWSGASFTSIMPSASSYSAXXXXXXXXXAKQTPAIGQRKLQSLPPALAITVAPAPSIKAVSAESTSKAVAAADLAGEPLDRNVSDDDWPSA 2100
            MGSELLPLGPVGSWAGVG     FGGEH ASEGLPSILDAIPAWKRPRLLKGLQERETEY +VEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAE PEG+ RS+G+ASSA P  AK GNA+SVCAET A EEG+GMEDV+AIGFQELVDLNAVNVAVDIKSQ             KRSVEWEERVLSSLNLAALHQANKRRRRASETPLV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           D DVL+V SVASL ETD+G QQDEG EVG+SLPHAAA DTATSPSATER NF RDEPSKS+GPASLGDAGGVS +GTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF PLPGAEWRRPQQQPQRRMNSFRG                V     NPL      ATVG+GRASE GPGSLNYRRKLSVAAPSLSGILSPR+KPNGDSSFASTSSKR VSSSCSPK TA+R GDT+ASCGCLSLPTSPDYTKQR+ARHQ+RVQRGRAASFCRELSP+QDDGSRGRR  PRRRNSMCMSWSGASFTS+MPSASSYSAXXXXXXXXXAKQTP IGQR+LQSLPPALAITVA APSI AV AESTS AVAAAD AG+PLDRNVSDDDWPSA
Sbjct:    1 MGSELLPLGPVGSWAGVGXXXXXFGGEHDASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAEGPEGKERSSGDASSAPPAAAKAGNAESVCAETSASEEGNGMEDVYAIGFQELVDLNAVNVAVDIKSQ-------------KRSVEWEERVLSSLNLAALHQANKRRRRASETPLVPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLN-------DDDVLDVVSVASLAETDNGLQQDEGVEVGISLPHAAASDTATSPSATERDNFHRDEPSKSHGPASLGDAGGVSDEGTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFQPLPGAEWRRPQQQPQRRMNSFRGGGSSPPTSPGTRRRLSVTTRLMNPLGGGGASATVGRGRASESGPGSLNYRRKLSVAAPSLSGILSPRHKPNGDSSFASTSSKRTVSSSCSPKRTAARDGDTDASCGCLSLPTSPDYTKQRQARHQQRVQRGRAASFCRELSPLQDDGSRGRRARPRRRNSMCMSWSGASFTSVMPSASSYSAXXXXXXXXXAKQTPPIGQRELQSLPPALAITVASAPSITAVGAESTSSAVAAADRAGQPLDRNVSDDDWPSA 680
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A6H5JG62_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE)

HSP 1 Score: 945 bits (2442), Expect = 0.000e+0
Identity = 602/712 (84.55%), Postives = 620/712 (87.08%), Query Frame = 1 
Query:    1 MGSELLPLGPVGSWAGVGGSGGGFGGEHYASEGLPSILDAIPAWKRPRLLKGLQERETEYISVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAERPEGEGRSNGNASSAHPPPAKVGNADSVCAETFAIEEGDGMEDVFAIGFQELVDLNAVNVAVDIKSQASEGHHFDEELSQKRSVEWEERVLSSLNLAALHQANKRRRRASETPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGD------------VLEVASVASLPETDDGTQQDEGAEVGLSLPHAAAGDTATSPSATERANFRRDEPSKSYGPASLGDAGGVSHDGTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPPLPGAEWRRPQQQPQRRMNSFRGXXXXXXXXXXXXXXXXVXXXXXNPLXXXXXXATVGKGRASEPGPGSLNYRRKLSVAAPSLSGILSPRYKPNGDSSFASTSSKRAVSSSCSPKITASRGGDTNASCGCLSLPTSPDYTKQRRARHQRRVQRGRAASFCRELSPVQDDGSRGRRVGPRRRNSMCMSWSGASFTSIMPSASSYSAXXXXXXXXXAKQTPAIGQRKLQSLPPALAITVAPAPSIKAVSAESTSKAVAAADLAGEPLDRNVSDDDWPSA 2100
            MGSELLPLGPVGSWAGVG     FGGEHYASEGLPSILDAIP WKRPRLLK LQERETEY SVEGVGVFIGTWNVNAKKPNF+DPLWLHEWLCP ER EG+GRS+G+ASSA PPPAK GNAD   AETFA EEGDGMEDV+AIG QELVDLNAVNVAVDIK                    WEERVLSSLNLAALHQANKRRRRASETP V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                VL V SVASL ETD+GTQ+DE AEV LSL HAAA  TATSPSATERAN  RDEPSKSYGPASLGDAG VSHDGTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPPLPG  WRRPQQQPQRRMNSFRGXXXXXXXXXXXXXXXX XXXXX   XXXXX ATVGKGRASEPGPGSLNYRR LS AAPSLSGI SPR+KPNGD SFASTSSKRAVSSSCSPK TA+RGGDT+ASCGCLSLPTSPDYTKQR+ARHQ+RVQRGRAASFCRELSP+QDDGSRGRR  PRRR+SMCMSWSGASFTS+MPSAS    XXXXXXXXX KQTP+IGQ++LQSLPPALAITVAPAPSI AV AESTS  VAAADLAGEPLDRNVSDDDWP A
Sbjct:  495 MGSELLPLGPVGSWAGVGXXXXXFGGEHYASEGLPSILDAIPGWKRPRLLKDLQERETEYTSVEGVGVFIGTWNVNAKKPNFEDPLWLHEWLCPTERLEGKGRSSGDASSAQPPPAKAGNADRFYAETFASEEGDGMEDVYAIGLQELVDLNAVNVAVDIKK-------------------WEERVLSSLNLAALHQANKRRRRASETPFVPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGVVSVASLAETDNGTQRDERAEVSLSLSHAAASGTATSPSATERANLHRDEPSKSYGPASLGDAGRVSHDGTTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPPLPGEGWRRPQQQPQRRMNSFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATVGKGRASEPGPGSLNYRRNLSGAAPSLSGIRSPRHKPNGDLSFASTSSKRAVSSSCSPKRTAARGGDTDASCGCLSLPTSPDYTKQRQARHQQRVQRGRAASFCRELSPLQDDGSRGRRARPRRRSSMCMSWSGASFTSVMPSASXXXXXXXXXXXXXVKQTPSIGQQELQSLPPALAITVAPAPSITAVGAESTSNTVAAADLAGEPLDRNVSDDDWPRA 1187
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A482SCN5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCN5_9ARCH)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-19
Identity = 40/89 (44.94%), Postives = 65/89 (73.03%), Query Frame = 1 
Query: 1000 FVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            +  + +++LVG +L VF R S++  + D+RS ++  G+MG+MGNKGGV +RL + DS++CF+ +HLAAHREN+  RN +++ I  + VF
Sbjct:   35 YEFIGEKYLVGLYLVVFARESLVPHIRDIRSTSLGVGIMGMMGNKGGVSVRLSVYDSTICFICAHLAAHRENVAGRNADFKNIYEKSVF 123
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A196SLQ2_BLAHN (Inositol 5-phosphatase (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SLQ2_BLAHN)

HSP 1 Score: 100 bits (248), Expect = 1.820e-19
Identity = 47/91 (51.65%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:  994 TTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            TT+VLV ++ LVG +L V+VR S+  +V DV + TV+ G++G+MGNKGG  IR RL DS++CFV SHLAAHREN+  RN ++ K + ++ +
Sbjct:  131 TTYVLVEQQILVGVFLCVYVRKSLRPRVQDVMTTTVATGLLGMMGNKGGAAIRFRLLDSTVCFVCSHLAAHRENVAGRNADFHKWIGDLNY 221
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A196SJ48_BLAHN (Inositol 5-phosphatase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJ48_BLAHN)

HSP 1 Score: 103 bits (257), Expect = 5.180e-19
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  994 TTFVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPP 1272
            TT+VLV ++ LVG +L V+VR S+  +V DV + TV+ G++G+MGNKGG  IR RL DS++CFV SHLAAHREN+  RN ++ KI   + F P
Sbjct:  168 TTYVLVEQQILVGVFLCVYVRKSLRPRVQDVMTTTVATGLLGMMGNKGGAAIRFRLLDSTVCFVCSHLAAHRENVAGRNADFHKICDNLRFKP 260
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A7S2SHQ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHQ8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.240e-18
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 1 
Query: 1000 FVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            + LV ++HLVG  L +FVR   ++ ++ V S TV  G+MG+MGNKGG  IR+RLRD++LCFV++HLAAHR+N+  RN ++  I+++ VF
Sbjct:  122 YSLVHEKHLVGIMLCIFVRVEHMQHLASVASQTVGVGVMGMMGNKGGASIRMRLRDTTLCFVAAHLAAHRDNVAGRNADFANIIQKTVF 210
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A7M3S7J1_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Phytopythium sindhum TaxID=795340 RepID=A0A7M3S7J1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.370e-18
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1 
Query: 1000 FVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            + LV ++HLVG  L V VR   L+ V +V  AT   G+MG+MGNKGG  +RL   DS+LCFV SHLAAHREN+  RN +YQ IL ++ F
Sbjct:   65 YKLVLEKHLVGILLLVIVRTDHLEHVREVFGATAGVGIMGMMGNKGGAAVRLSFYDSTLCFVCSHLAAHRENVAGRNADYQNILGKIQF 153
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A5D6XQQ9_9STRA (Rho-GAP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQQ9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.830e-17
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1 
Query: 1000 FVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVFPPLPGAEW 1290
            + +V ++HLVG  L VFV+      + DVR AT   G+MGVMGNKGGV +RL L DS+LCFV +HLAAHREN+  RN +Y  IL ++ F       W
Sbjct:  147 YKVVMEKHLVGILLLVFVKVEHAAFIRDVRGATAGVGIMGVMGNKGGVAVRLNLYDSTLCFVCAHLAAHRENVAGRNADYLSILSKIEFRDSDSDSW 243
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BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A7S2DZQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZQ0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.030e-17
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1 
Query: 1000 FVLVAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            + L+A+++LVG  + VFV+A   +++ DV   +V  G+MG+MGNKGGV IRL+  DS++C V SHLAAHREN+  RN ++  +  +  F
Sbjct:   14 YTLLAQKYLVGLLICVFVKAPHKQRIKDVHCDSVGVGVMGMMGNKGGVSIRLQFYDSTICVVCSHLAAHRENVAGRNADFANVFNKTSF 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Match: A0A7I6MYA6_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Pustula obtusata TaxID=1471603 RepID=A0A7I6MYA6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.590e-17
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1 
Query: 1009 VAKEHLVGTWLAVFVRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLAAHRENIKARNENYQKILREMVF 1266
            +A++HLVG  L +FVR      V ++  AT   G+MG+MGNKGG  IRL+  +S+LCFVSSHLAAHR+N+ ARN +Y  IL ++ F
Sbjct:   23 LAEKHLVGISLLIFVRKDHESHVKELAGATAGVGIMGMMGNKGGAAIRLKFYNSTLCFVSSHLAAHRDNVAARNADYYNILNKIDF 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11182.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKN8_ECTSI0.000e+083.86IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JG62_9PHAE0.000e+084.55IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A482SCN5_9ARCH1.160e-1944.94Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A196SLQ2_BLAHN1.820e-1951.65Inositol 5-phosphatase (Fragment) n=1 Tax=Blastocy... [more]
A0A196SJ48_BLAHN5.180e-1953.76Inositol 5-phosphatase n=1 Tax=Blastocystis sp. su... [more]
A0A7S2SHQ8_9STRA4.240e-1850.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7M3S7J1_9STRA4.370e-1853.93Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A5D6XQQ9_9STRA1.830e-1750.52Rho-GAP domain-containing protein n=1 Tax=Pythium ... [more]
A0A7S2DZQ0_9STRA2.030e-1746.07Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7I6MYA6_9STRA2.590e-1752.33Putative inositol polyphosphate 5-phosphatase (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11182contigEcto-sp13_S_contig11182:1782..5531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1013.8
Seed ortholog evalue3.8e-293
Seed eggNOG ortholog2880.D7FKN8
Model size2100
KEGG rclassRC00078
KEGG koko:K01099,ko:K01974,ko:K12819,ko:K20279
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko03040,ko04070,map00562,map01100,map03040,map04070
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759,KOG0566@2759
Ec32 ortholog descriptionInositol polyphosphate-related phosphatase
Ec32 orthologEc-09_000920.1
EC3.1.3.36,6.5.1.4
Cds size2100
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11182.1043.1prot_Ecto-sp13_S_contig11182.1043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11182 1782..5531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462582.2744298-CDS-Ecto-sp13_S_contig11182:1781..19481681462582.2744298-CDS-Ecto-sp13_S_contig11182:1781..1948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 1782..1948 +
1681462582.2853014-CDS-Ecto-sp13_S_contig11182:2231..23191681462582.2853014-CDS-Ecto-sp13_S_contig11182:2231..2319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 2232..2319 +
1681462582.2933161-CDS-Ecto-sp13_S_contig11182:2736..30061681462582.2933161-CDS-Ecto-sp13_S_contig11182:2736..3006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 2737..3006 +
1681462582.3366106-CDS-Ecto-sp13_S_contig11182:3363..39311681462582.3366106-CDS-Ecto-sp13_S_contig11182:3363..3931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 3364..3931 +
1681462582.3496995-CDS-Ecto-sp13_S_contig11182:4193..43451681462582.3496995-CDS-Ecto-sp13_S_contig11182:4193..4345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 4194..4345 +
1681462582.3586664-CDS-Ecto-sp13_S_contig11182:4676..55311681462582.3586664-CDS-Ecto-sp13_S_contig11182:4676..5531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 4677..5531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11182.1043.1

>prot_Ecto-sp13_S_contig11182.1043.1 ID=prot_Ecto-sp13_S_contig11182.1043.1|Name=mRNA_Ecto-sp13_S_contig11182.1043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=700bp
MGSELLPLGPVGSWAGVGGSGGGFGGEHYASEGLPSILDAIPAWKRPRLL
KGLQERETEYISVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAERPEG
EGRSNGNASSAHPPPAKVGNADSVCAETFAIEEGDGMEDVFAIGFQELVD
LNAVNVAVDIKSQASEGHHFDEELSQKRSVEWEERVLSSLNLAALHQANK
RRRRASETPLVPRSSATTGGAQEKGASDAAAETTPKDDTTQPPPDFLCDD
DDDDGDGDVLEVASVASLPETDDGTQQDEGAEVGLSLPHAAAGDTATSPS
ATERANFRRDEPSKSYGPASLGDAGGVSHDGTTFVLVAKEHLVGTWLAVF
VRASMLKQVSDVRSATVSAGMMGVMGNKGGVGIRLRLRDSSLCFVSSHLA
AHRENIKARNENYQKILREMVFPPLPGAEWRRPQQQPQRRMNSFRGGGSS
PPTSPGTRRRLSVTTRLMNPLGGGGAAATVGKGRASEPGPGSLNYRRKLS
VAAPSLSGILSPRYKPNGDSSFASTSSKRAVSSSCSPKITASRGGDTNAS
CGCLSLPTSPDYTKQRRARHQRRVQRGRAASFCRELSPVQDDGSRGRRVG
PRRRNSMCMSWSGASFTSIMPSASSYSAASCCPPPPPAKQTPAIGQRKLQ
SLPPALAITVAPAPSIKAVSAESTSKAVAAADLAGEPLDRNVSDDDWPSA
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mRNA from alignment at Ecto-sp13_S_contig11182:1782..5531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11182.1043.1 ID=mRNA_Ecto-sp13_S_contig11182.1043.1|Name=mRNA_Ecto-sp13_S_contig11182.1043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11182:1782..5531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATCTGAGTTGCTGCCGCTTGGCCCTGTCGGAAGCTGGGCCGGGGT
TGGCGGGAGTGGCGGTGGGTTCGGTGGGGAACATTATGCGAGCGAAGGCC
TGCCCAGTATTCTCGATGCTATCCCTGCTTGGAAGCGACCGAGGTTGCTC
AAGGGTTTGCAGGAGCGGTGAGTCGCAGCGTAATGTATTCTGCTTAACGT
TGCAAGTAAAATAATCGATTTGAAGCACGTGATCCTACCTGTATCAGGTC
GTGTGTTGCGGTCCTCGCTGGTTTCCAGCAGAACAATCTATACCAGTACT
GCAAGTAGATCAACCCACACCGTTTCAAGCAACGCGTCCTCGAGCCGCAA
TATGTTACCGGGATACCCCTAAGAGCGTTTGTCTATTACTCTTTGTTGAG
TGAAGCCTTGGCTGAATGTAGCTTCCCCCATTGTCGCCTGGCTGGACTAG
GGAAACGGAGTACATCTCCGTGGAAGGCGTCGGAGTCTTCATCGGGACGT
GGAACGTCAACGCCAAGAAGCCAAACTTCGATGACCCTGTGAGTGTCACG
CACTACTTCGCGAAGAGGCCGTCGTGTCAAGCTGCTCTGACAGTTCGGAT
TCCTGCTGCAAGTTCCCTCTCCTGGTCCTCCCTTTCCTACAGGAGCGAAA
CATGGACGTCCCTAACATTCCTCCCTCTATCTCTTAGCCCGCAGATCGTT
TCTTGTCGCCTGAAGTGTCGAAACTATAGAAGGGTGTGTCACCGGTTACC
ATCGACGGCGCTAGGAGGGATGAGACCGACAACCCAATTGGCTGGCTCGA
TCTTTTAGGTTCGAGATCCGCACATGATGCCCAATATTTCATTGGCGTAT
GGGGTTTATTGCTGGTCGGAGCTCGGTGGATTTCACCTCAAATGAACATT
TTTTCCCGCCTCTCTCGTCCGACGGCCATGATCATCACAACGTCCCACCT
CTAAGTTGTGGCTGCACGAGTGGCTTTGCCCCGCGGAGAGGCCAGAGGGC
GAAGGGCGTAGCAACGGGAACGCCTCGTCGGCACATCCACCACCAGCAAA
GGTTGGGAATGCTGACAGCGTTTGCGCCGAGACCTTTGCCATCGAGGAAG
GTGACGGAATGGAAGACGTATTCGCTATCGGGTTCCAGGAGTTGGTCGAC
CTCAACGCCGTCAACGTTGCTGTCGACATCAAGAGTCAGGCAAGCGAAGG
ACATCATTTCGATGAAGAGTTAAGCGTCTAGAATGTTTGGCACGTGGAGT
CATCAACACACAGCACCGGGCATAGGCTTGTGCCGGGCGCTGGTGCGTAA
CAAATCACTCGTCGCCAGTGGTTCCGTGAAGCCCACCCATCGGGCGAACG
AGGAAAGGGTTGATGTTCTGTTCCGGAGACATCCTCATCAGAAAGACACC
GAGGTTCACCTCGCATGTCAAATCGCCCATAGGTTGTATCGTCGCCCAGA
AAACAAACATGGGCAGACGAACTTCATGAAAAGAAGTACAACGATCTCGT
GTACGTCCGTGTTTTTCTCGTGTCGCCACGATACCACTCTGCGGGCATTC
GAACTCGATCGTTTTTATCTTTTTTTTATGAGCAGAAGCGAAGTGTAGAG
TGGGAAGAGCGTGTGCTCTCCTCGCTCAACCTCGCGGCGCTCCATCAGGC
CAACAAGAGAAGAAGGAGGGCTAGCGAAACCCCTCTTGTGCCTCGCTCGT
CGGCGACGACCGGGGGAGCGCAAGAAAAGGGCGCCTCCGACGCGGCCGCG
GAGACGACGCCGAAGGACGACACGACGCAACCGCCCCCCGATTTCCTTTG
TGACGACGACGACGACGACGGCGACGGCGACGTTCTCGAGGTGGCATCGG
TCGCGAGCCTCCCGGAAACCGATGACGGTACGCAGCAAGACGAAGGTGCG
GAAGTCGGCCTATCTCTTCCCCATGCTGCAGCCGGCGACACGGCTACCAG
TCCGAGCGCAACAGAGCGGGCTAATTTCCGCCGTGACGAGCCGTCGAAGT
CGTACGGACCGGCTAGCCTCGGCGACGCCGGAGGGGTTAGCCACGATGGG
ACGACGTTCGTGCTGGTGGCCAAGGAACACCTGGTCGGGACCTGGCTGGC
GGTGTTCGTGCGGGCGTCCATGCTCAAGCAGGTCTCCGACGTGCGCTCGG
GTAAGGAAAACATAGACAAGTTCGCTAGGCACTCCCCTTCTCAACATGCC
GCTGTCACGGCACTGTTTATGCCGCTTATTAGGAGTGAGTGTGAATCCGT
ACATAAGTCCAACTTCGTGCCTTTCTCTCTCACTCTTCCCCTCTCTCTGC
CTTTATCTCTTCCGCCGTCTGTTTGTCTGTCTGTCTGTCTCTGTCTGTGT
CCGTGTTTGTCTCCCTCTCTCTCCCTCTCCCTTCGGTTGTCTGTTCTTGC
ACCCTAAACTAGCGACCGTTTCCGCGGGTATGATGGGCGTAATGGGCAAC
AAGGGCGGCGTCGGGATCCGCTTACGCCTCCGTGACAGCTCTCTCTGCTT
TGTTTCTAGCCACTTGGCAGCTCATCGGGAAAACATCAAGGCCAGAAACG
AAAACTATCAGAAGGTAGACCGTTGACTCTCCTTGCACAGGTGAAGGTGA
TTTCCCCCAGCACACTTATCAAAGTCGCGAAACCTGTAGCGAGGAGTCTT
CTTAACCAGGACCGTTTGCGATGGAGCGGTTGAGATCACCGCCCTCGACA
AAAAAAGCGATTTCACCGCGACAACCGCAACCACAGGCAACTCCTTGAGA
TAGGAACGACCCGCAAAGGGGCTGGTTGTTGCCGACTCCCCATGCGCAAT
TTGCGTGACGAGTCATACTTCCCTACACATACCTGACGGCGCACATCCAC
CCTACCTTCCCCTGTCAACATTGACTTGCTCTGTCCTGCGGATAGATTTT
GCGAGAAATGGTGTTCCCGCCTCTGCCGGGGGCGGAGTGGCGTCGGCCAC
AGCAGCAACCACAGCGGCGAATGAACAGCTTCCGGGGCGGGGGGTCATCA
CCCCCGACCTCCCCGGGTACCAGGAGACGCCTAAGCGTGACAACTCGGCT
GATGAATCCTTTGGGTGGGGGAGGTGCGGCGGCAACCGTGGGAAAGGGAC
GAGCGTCGGAGCCAGGACCGGGGTCCTTGAACTACCGGAGGAAGTTGAGC
GTGGCCGCGCCGTCTCTTTCGGGCATCCTGTCCCCGCGGTACAAGCCCAA
CGGCGATTCATCCTTCGCGTCTACTTCGTCGAAAAGAGCGGTTTCTTCTT
CCTGCTCTCCGAAGATAACAGCCTCGCGTGGCGGCGACACCAATGCCTCC
TGCGGCTGTCTCTCGCTCCCGACGTCTCCGGACTACACCAAGCAGCGACG
TGCTCGACACCAGCGGAGGGTGCAGAGAGGGCGGGCTGCGAGCTTCTGCC
GGGAGCTGTCCCCTGTCCAGGACGACGGCAGCCGCGGCCGCCGTGTCGGA
CCGCGGCGGCGCAACAGCATGTGCATGTCTTGGTCGGGGGCTTCGTTTAC
CTCCATCATGCCGTCGGCTTCCTCCTACTCAGCCGCGTCGTGCTGCCCCC
CCCCGCCCCCGGCAAAACAAACCCCGGCCATCGGTCAGCGAAAGCTGCAG
TCCTTGCCACCAGCTCTCGCTATCACGGTTGCCCCGGCCCCTTCCATCAA
GGCCGTCAGCGCCGAGTCAACCTCCAAAGCGGTGGCCGCCGCCGATCTTG
CCGGAGAGCCCCTCGATCGCAATGTCTCCGATGATGACTGGCCGAGTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11182:1782..5531+

>mRNA_Ecto-sp13_S_contig11182.1043.1 ID=mRNA_Ecto-sp13_S_contig11182.1043.1|Name=mRNA_Ecto-sp13_S_contig11182.1043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11182:1782..5531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATCTGAGTTGCTGCCGCTTGGCCCTGTCGGAAGCTGGGCCGGGGT
TGGCGGGAGTGGCGGTGGGTTCGGTGGGGAACATTATGCGAGCGAAGGCC
TGCCCAGTATTCTCGATGCTATCCCTGCTTGGAAGCGACCGAGGTTGCTC
AAGGGTTTGCAGGAGCGGGAAACGGAGTACATCTCCGTGGAAGGCGTCGG
AGTCTTCATCGGGACGTGGAACGTCAACGCCAAGAAGCCAAACTTCGATG
ACCCTTTGTGGCTGCACGAGTGGCTTTGCCCCGCGGAGAGGCCAGAGGGC
GAAGGGCGTAGCAACGGGAACGCCTCGTCGGCACATCCACCACCAGCAAA
GGTTGGGAATGCTGACAGCGTTTGCGCCGAGACCTTTGCCATCGAGGAAG
GTGACGGAATGGAAGACGTATTCGCTATCGGGTTCCAGGAGTTGGTCGAC
CTCAACGCCGTCAACGTTGCTGTCGACATCAAGAGTCAGGCAAGCGAAGG
ACATCATTTCGATGAAGAGTTAAGCCAGAAGCGAAGTGTAGAGTGGGAAG
AGCGTGTGCTCTCCTCGCTCAACCTCGCGGCGCTCCATCAGGCCAACAAG
AGAAGAAGGAGGGCTAGCGAAACCCCTCTTGTGCCTCGCTCGTCGGCGAC
GACCGGGGGAGCGCAAGAAAAGGGCGCCTCCGACGCGGCCGCGGAGACGA
CGCCGAAGGACGACACGACGCAACCGCCCCCCGATTTCCTTTGTGACGAC
GACGACGACGACGGCGACGGCGACGTTCTCGAGGTGGCATCGGTCGCGAG
CCTCCCGGAAACCGATGACGGTACGCAGCAAGACGAAGGTGCGGAAGTCG
GCCTATCTCTTCCCCATGCTGCAGCCGGCGACACGGCTACCAGTCCGAGC
GCAACAGAGCGGGCTAATTTCCGCCGTGACGAGCCGTCGAAGTCGTACGG
ACCGGCTAGCCTCGGCGACGCCGGAGGGGTTAGCCACGATGGGACGACGT
TCGTGCTGGTGGCCAAGGAACACCTGGTCGGGACCTGGCTGGCGGTGTTC
GTGCGGGCGTCCATGCTCAAGCAGGTCTCCGACGTGCGCTCGGCGACCGT
TTCCGCGGGTATGATGGGCGTAATGGGCAACAAGGGCGGCGTCGGGATCC
GCTTACGCCTCCGTGACAGCTCTCTCTGCTTTGTTTCTAGCCACTTGGCA
GCTCATCGGGAAAACATCAAGGCCAGAAACGAAAACTATCAGAAGATTTT
GCGAGAAATGGTGTTCCCGCCTCTGCCGGGGGCGGAGTGGCGTCGGCCAC
AGCAGCAACCACAGCGGCGAATGAACAGCTTCCGGGGCGGGGGGTCATCA
CCCCCGACCTCCCCGGGTACCAGGAGACGCCTAAGCGTGACAACTCGGCT
GATGAATCCTTTGGGTGGGGGAGGTGCGGCGGCAACCGTGGGAAAGGGAC
GAGCGTCGGAGCCAGGACCGGGGTCCTTGAACTACCGGAGGAAGTTGAGC
GTGGCCGCGCCGTCTCTTTCGGGCATCCTGTCCCCGCGGTACAAGCCCAA
CGGCGATTCATCCTTCGCGTCTACTTCGTCGAAAAGAGCGGTTTCTTCTT
CCTGCTCTCCGAAGATAACAGCCTCGCGTGGCGGCGACACCAATGCCTCC
TGCGGCTGTCTCTCGCTCCCGACGTCTCCGGACTACACCAAGCAGCGACG
TGCTCGACACCAGCGGAGGGTGCAGAGAGGGCGGGCTGCGAGCTTCTGCC
GGGAGCTGTCCCCTGTCCAGGACGACGGCAGCCGCGGCCGCCGTGTCGGA
CCGCGGCGGCGCAACAGCATGTGCATGTCTTGGTCGGGGGCTTCGTTTAC
CTCCATCATGCCGTCGGCTTCCTCCTACTCAGCCGCGTCGTGCTGCCCCC
CCCCGCCCCCGGCAAAACAAACCCCGGCCATCGGTCAGCGAAAGCTGCAG
TCCTTGCCACCAGCTCTCGCTATCACGGTTGCCCCGGCCCCTTCCATCAA
GGCCGTCAGCGCCGAGTCAACCTCCAAAGCGGTGGCCGCCGCCGATCTTG
CCGGAGAGCCCCTCGATCGCAATGTCTCCGATGATGACTGGCCGAGTGCT
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