mRNA_Ecto-sp13_S_contig11180.1041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig11180.1041.1
Unique Name	mRNA_Ecto-sp13_S_contig11180.1041.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5JSP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.790e-42
Identity = 85/129 (65.89%), Postives = 89/129 (68.99%), Query Frame = 2

Query:  341 AGPWDGVYEVQGGVGSNHPRHGQDLLKICELTLDLDGSEDHAWCMHNLREGYRELLQKQRAEWEKAHPGVWLPPLHLQGVLDGESIGTSPITAAEKEVQGRLLLPADGEESDSDVELLDYDSDLEFSGV 727
            AGPWDGVY V  GV SNHPRHGQDLL+IC LTL LDG             GY ELLQ+QR E EKAHPGV LPP  L  V DGE IGT+PITAAEK VQGR L PAD       VELL+YDSDLEF GV
Sbjct:  190 AGPWDGVYVVPEGVASNHPRHGQDLLQICGLTLTLDGK------------GYPELLQEQRVESEKAHPGVSLPPFQLPEVHDGELIGTNPITAAEKMVQGRRLPPAD-------VELLEYDSDLEFLGV 299

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5JE48_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE48_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.920e-26
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 3

Query:  180 EEVRQR-----ILILGGLTPLLQPLDRMLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAITPDTVKTCLR 422
            E++R+R     ILI GGLTPLLQPLDRMLNK+++RL+R + T   A+A+ADP TGKL PPGRG+VSTRCKE+WAAITP+TVK C +
Sbjct:  306 EDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEIKRLMRGRCTQYMASAIADPKTGKLQPPGRGLVSTRCKESWAAITPETVKKCFK 391

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5KRI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.900e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2

Query:  416 LKICELTLDLDGSEDHAWCMHNLREGYRELLQKQRAEWEKAHPGVWLPPLHLQGVLDGESIGTSPITAAEKEVQGRLLLPADGEESDSDVELLDYDSDLE 715
             KIC LTL LDG+++HAWC HN  E YR+LL++Q A W   HP V LPPL L  V  G  +  +PITAA+KEV+G+LL P   +ESDS+VE+L  DSD+E
Sbjct:   58 FKICGLTLALDGNKNHAWCKHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPRG--VDPNPITAAQKEVEGKLL-PYVADESDSEVEVLQGDSDVE 154

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.330e-25
Identity = 61/111 (54.95%), Postives = 75/111 (67.57%), Query Frame = 2

Query:  383 GSNHPRHGQDLLKICELTLDLDGSEDHAWCMHNLREGYRELLQKQRAEWEKAHPGVWLPPLHLQGVLDGESIGTSPITAAEKEVQGRLLLPADGEESDSDVELLDYDSDLE 715
            GS  P   +   KIC LTL LDGSEDHAWC HN  E YR+LL++Q A W   HP V LPPL L  V  G    ++PITAA+KEV+G+LL P   +ES S+VE+L+ DSD+E
Sbjct:  388 GSITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPRG--FDSNPITAAQKEVEGKLL-PYVADESGSEVEVLEGDSDVE 495

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5KT80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT80_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.050e-24
Identity = 61/129 (47.29%), Postives = 77/129 (59.69%), Query Frame = 2

Query:  329 QAEPAGPWDGVYEVQGGVGSNHPRHGQDLLKICELTLDLDGSEDHAWCMHNLREGYRELLQKQRAEWEKAHPGVWLPPLHLQGVLDGESIGTSPITAAEKEVQGRLLLPADGEESDSDVELLDYDSDLE 715
            +AE  G W  +Y                  KIC LTL L GSEDHAWC +N  E YR+LL++Q A W   HP + LPPL L  V  G    ++PITAA+KEV+G+LL P   +ESDS+VE+L  DSD+E
Sbjct:   81 EAEATGAWGRLYVT--------------CFKICGLTLALYGSEDHAWCENNFGEDYRDLLEEQHAVWLAEHPDMTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLL-PYVADESDSEVEVLKGDSDVE 192

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.900e-24
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 3

Query:  198 ILILGGLTPLLQPLDRMLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAITPDTVKTCLRF 425
            I I GGLTPLLQPLDRMLNKQM+RLLR   TA TA A  DP TGKL+PPGRG V+T CK AWA+ITP+TVKTC + 
Sbjct:  396 IFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKI 471

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5JJG0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.980e-24
Identity = 59/111 (53.15%), Postives = 73/111 (65.77%), Query Frame = 2

Query:  395 PRHGQDLLKICELTLDLDGSEDHA-----WCMHNLREGYRELLQKQRAEWEKAHPGVWLPPLHLQGVLDGESIGTSPITAAEKEVQGRLLLPADGEESDSDVELLDYDSDL 712
            P   +   KIC LTL LDGSEDHA     WC H+  E YR+LL++Q A W   HP V LPPL L  V  G    +SPITAA+KEV+G+LL P   +ESDS+VE+L+ DSD+
Sbjct:   87 PETVKTCFKICGLTLALDGSEDHACEDHAWCEHHFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSSPITAAQKEVEGKLL-PYVADESDSEVEVLEGDSDV 194

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5K0T0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.790e-24
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 3

Query:  198 ILILGGLTPLLQPLDRMLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAITPDTVKTCLRF 425
            I I GGLTPLLQ LDRMLNKQM+RLLR K TA +A+AVAD  +GKL PP RG+VST CKEAW +ITP TVKTC + 
Sbjct:   23 IFIPGGLTPLLQALDRMLNKQMKRLLRGKYTAYSASAVADALSGKLKPPERGVVSTWCKEAWESITPKTVKTCFKI 98

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.510e-24
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 3

Query:  198 ILILGGLTPLLQPLDRMLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAITPDTVKTCLRFAN*RLTSMAARTTPGACTTSVRVTASCSRNSAPSGRKRTP 545
            I I GGL PLLQPLDRMLNKQM+RLLR K TA +A+AVAD  +GK  PP RG+VST CKE W +ITP+TVKTC +     L    +         S + TA+ SR+S P     TP
Sbjct:   67 IFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPERGVVSTWCKEEWESITPETVKTCFKICGRTLALDGSEDHAWCEHNSGKTTATFSRSSTPCDSLSTP 182

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BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.320e-24
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 3

Query:  198 ILILGGLTPLLQPLDRMLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAITPDTVKTCLRF 425
            I I GG TPLLQPLDRMLNKQM+RLLR K TA +A+AVAD  +GKL PP RG+VST CK+AW +ITP+TVKTC + 
Sbjct:   67 IFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKI 142

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11180.1041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JSP1_9PHAE	2.790e-42	65.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE48_9PHAE	2.920e-26	66.28	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KRI4_9PHAE	6.900e-26	56.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKC9_9PHAE	6.330e-25	54.95	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KT80_9PHAE	1.050e-24	47.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KE45_9PHAE	2.900e-24	72.37	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JJG0_9PHAE	2.980e-24	53.15	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K0T0_9PHAE	3.790e-24	71.05	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5L467_9PHAE	5.510e-24	53.45	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JBJ7_9PHAE	7.320e-24	69.74	DDE-1 domain-containing protein n=2 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11180	contig	Ecto-sp13_S_contig11180:4343..5069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	727
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-02_005760.1
Cds size	189

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462582.1855478-UTR-Ecto-sp13_S_contig11180:4342..4635	1681462582.1855478-UTR-Ecto-sp13_S_contig11180:4342..4635	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig11180 4343..4635 -
1681462582.2026424-UTR-Ecto-sp13_S_contig11180:4824..5069	1681462582.2026424-UTR-Ecto-sp13_S_contig11180:4824..5069	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig11180 4825..5069 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462582.1945364-CDS-Ecto-sp13_S_contig11180:4635..4824	1681462582.1945364-CDS-Ecto-sp13_S_contig11180:4635..4824	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11180 4636..4824 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11180.1041.1	prot_Ecto-sp13_S_contig11180.1041.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig11180 4636..4824 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig11180:4343..5069-
coding sequence from alignment at Ecto-sp13_S_contig11180:4343..5069-

protein sequence of mRNA_Ecto-sp13_S_contig11180.1041.1

>prot_Ecto-sp13_S_contig11180.1041.1 ID=prot_Ecto-sp13_S_contig11180.1041.1|Name=mRNA_Ecto-sp13_S_contig11180.1041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MLNKQMQRLLRAKNTASTATAVADPTTGKLSPPGRGMVSTRCKEAWAAIT
PDTVKTCLRFAN*

mRNA from alignment at Ecto-sp13_S_contig11180:4343..5069-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig11180.1041.1 ID=mRNA_Ecto-sp13_S_contig11180.1041.1|Name=mRNA_Ecto-sp13_S_contig11180.1041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=727bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11180:4343..5069- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTTTGGTGTGCAGGAGAACAGCTGATGTGATGCGCAGGAGTGCAC
CACCCTTTGGATTTCGGAGAGCTGGAGGCTTCGCCCCAACCACGAAAGCA
TCACCAAGCAGCGCCCGAGCATCTTGGTGTTGGACGACTTTAAGTGCCAA
CGTGATAAGGCCTTCATGGACGACCTCCGGAAGAGGTGCGACAACGCATC
CTGATCCTGGGCGGGTTGACTCCTCTCCTCCAGCCGCTGGACCGCATGCT
AAACAAGCAGATGCAGCGGCTGCTGCGGGCGAAGAACACCGCCTCCACCG
CCACAGCGGTGGCCGACCCCACTACGGGCAAGCTGAGCCCGCCGGGCCGT
GGGATGGTGTCTACGAGGTGCAAGGAGGCGTGGGCAGCAATCACCCCCGA
CACGGTCAAGACTTGCTTAAGATTTGCGAACTAACGCTTGACCTCGATGG
CAGCGAGGACCACGCCTGGTGCATGCACAACCTCCGTGAGGGTTACCGCG
AGCTGCTCCAGAAACAGCGCGCCGAGTGGGAGAAAGCGCACCCCGGCGTT
TGGCTGCCCCCGCTCCATTTACAAGGGGTACTCGACGGCGAGTCGATCGG
CACCAGCCCCATCACGGCAGCAGAGAAGGAGGTTCAAGGACGTCTGCTAC
TTCCTGCGGATGGAGAGGAAAGCGACAGCGATGTGGAGCTGCTGGACTAT
GACAGCGACCTAGAGTTCTCGGGCGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11180:4343..5069-

>mRNA_Ecto-sp13_S_contig11180.1041.1 ID=mRNA_Ecto-sp13_S_contig11180.1041.1|Name=mRNA_Ecto-sp13_S_contig11180.1041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11180:4343..5069- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTAAACAAGCAGATGCAGCGGCTGCTGCGGGCGAAGAACACCGCCTC
CACCGCCACAGCGGTGGCCGACCCCACTACGGGCAAGCTGAGCCCGCCGG
GCCGTGGGATGGTGTCTACGAGGTGCAAGGAGGCGTGGGCAGCAATCACC
CCCGACACGGTCAAGACTTGCTTAAGATTTGCGAACTAA