mRNA_Ecto-sp13_S_contig11178.1035.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11178.1035.1
Unique NamemRNA_Ecto-sp13_S_contig11178.1035.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11178.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11178contigEcto-sp13_S_contig11178:3062..4189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size601
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462581.675295-CDS-Ecto-sp13_S_contig11178:3061..32471681462581.675295-CDS-Ecto-sp13_S_contig11178:3061..3247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11178 3062..3247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462581.6891158-UTR-Ecto-sp13_S_contig11178:3247..32971681462581.6891158-UTR-Ecto-sp13_S_contig11178:3247..3297Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11178 3248..3297 -
1681462581.7011507-UTR-Ecto-sp13_S_contig11178:3824..41891681462581.7011507-UTR-Ecto-sp13_S_contig11178:3824..4189Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11178 3825..4189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11178.1035.1prot_Ecto-sp13_S_contig11178.1035.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11178 3062..3247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11178.1035.1

>prot_Ecto-sp13_S_contig11178.1035.1 ID=prot_Ecto-sp13_S_contig11178.1035.1|Name=mRNA_Ecto-sp13_S_contig11178.1035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MEQHRYSGVPDQNARPIHGAPQADGSATGYAQHQQQIYRPMRSPDSHAGV
GSSAPTAAPASQ
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mRNA from alignment at Ecto-sp13_S_contig11178:3062..4189-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11178.1035.1 ID=mRNA_Ecto-sp13_S_contig11178.1035.1|Name=mRNA_Ecto-sp13_S_contig11178.1035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11178:3062..4189- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTGATCGTGACGAAATCCGAATCCAAAACGCTTTGTCTCCAGAACTA
GAACCGACTCGTTGGCGGACTTTAGGAGACACGAGATCCTTGCGGGAGAG
AGAGGGGGCGGGCGGATAATTTCCGGCGGCAGTTCAGAGGGAAGGCGTTC
CCTCCTTGCTGCTCGCTCGGGGAAGGAGCCTGTGCCTCCCGGGCATCGAA
TCGTTTCGTCAAAGCCCGCGGGCGCCCCGAAAACAAAGCTCAACGCATCA
TAGCCAAAAACAACAGGCGCGGAGGAGAGGGCACGCAAGAGAGGAAAGGA
GGCAAAGGCGGGGGGGGGAGCTTTGGTGCCAGGCCGGGCTTGAGGGCGTG
CAGGGAGCTCTCGAGGTGTGAGGAGTGAAGTGTTCGCTTTGGGGTGGGGG
AGCTCCTTCGGCTTTTTGGTGCTGTCTTTTTTTGGCGAAGGATGTGTTTG
TCTCCCACGCAAGGTTGGTCAGGGTTCGGCAGCGGTGGAAGTCCCAAAAA
AAAACGAGCCTCATCCTCCTGCGCGGTAATTGCAAATCCACACGTCAATC
TTTTCTCATACATTTTTCGCGCGGGTGCTCGGGGTGACGCACATCTTCCG
CCCCGAAACGACTAGCCCGAATCCTGCTGGTGATCCCCACCCCTTTCCTC
TCTGGCCGTTCCTTGGTCTCGCTATCTGCTGGCGGTGTGGTGTGACAACC
TCTCACACGAACGAAAATCATTTTTCTGATCTTTTATGTGAGAGTGTGAA
CACGCCGTGTAGTTGCTCCTGAGCCCACACACACATACACGAAACGTGTA
TGCATATGATACAGCAATATGTCCTTATTGCACTCTCGGGGCCAGTATCA
ACCTCCAGATCAACCACCACACCCAACCGAACCCTGCAGCAGGTCGGGTC
CGCCGCAGCTGCGAGGCTGTGCGTGATCCCGTCTGCTGTCAGATGGAGCA
GCATCGCTACTCTGGCGTCCCGGACCAGAATGCACGCCCTATCCATGGCG
CCCCGCAAGCAGATGGGTCCGCGACAGGATACGCCCAGCATCAACAGCAG
ATTTATCGACCCATGAGAAGCCCAGATTCCCATGCAGGCGTAGGATCATC
AGCCCCGACCGCTGCTCCGGCTAGCCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11178:3062..4189-

>mRNA_Ecto-sp13_S_contig11178.1035.1 ID=mRNA_Ecto-sp13_S_contig11178.1035.1|Name=mRNA_Ecto-sp13_S_contig11178.1035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11178:3062..4189- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCAGCATCGCTACTCTGGCGTCCCGGACCAGAATGCACGCCCTAT
CCATGGCGCCCCGCAAGCAGATGGGTCCGCGACAGGATACGCCCAGCATC
AACAGCAGATTTATCGACCCATGAGAAGCCCAGATTCCCATGCAGGCGTA
GGATCATCAGCCCCGACCGCTGCTCCGGCTAGCCAA
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