mRNA_Ecto-sp13_S_contig11171.1030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: D8LTE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE4_ECTSI) HSP 1 Score: 171 bits (432), Expect = 3.310e-51 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1
Query: 1 FFFVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
FFFVPADVAKEEDCSRLVSEAD LMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKG PGSIVNISS
Sbjct: 88 FFFVPADVAKEEDCSRLVSEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISS 174
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A6H5KWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ8_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.300e-35 Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 73 MGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
MGCIDGLVNCAAWTARATLDTTTV+VWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS
Sbjct: 1 MGCIDGLVNCAAWTARATLDTTTVEVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 63
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A7V0NU82_9ACTN (SDR family oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A7V0NU82_9ACTN) HSP 1 Score: 81.3 bits (199), Expect = 1.210e-16 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
FVP ++A + C LV+ D G +D LVN A + R ++ TTV++WD +MN NVR PFLL+Q V K MR +G G+IVN++S
Sbjct: 61 FVPVELADADSCKALVAATDDRFGRVDVLVNAAGLSLRGSIIDTTVELWDTLMNVNVRAPFLLMQGVIKIMRREGIAGTIVNVAS 145
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A2P7RZB0_9HYPH (Short-chain dehydrogenase n=1 Tax=Mesorhizobium ephedrae TaxID=2116701 RepID=A0A2P7RZB0_9HYPH) HSP 1 Score: 80.5 bits (197), Expect = 2.170e-16 Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
F+ ADV++ +C+R V+EA G I+GLVN AA +AR +L TT +++D + NTNVRGPF L+Q V K + PGSIVN+
Sbjct: 64 FIGADVSEPANCARAVAEATERFGTINGLVNAAASSARGSLTETTPELFDFLFNTNVRGPFFLMQGVVKGLLQARAPGSIVNV 146
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: B9BHF0_9BURK (Short-chain dehydrogenase/reductase SDR n=5 Tax=Burkholderia TaxID=32008 RepID=B9BHF0_9BURK) HSP 1 Score: 80.1 bits (196), Expect = 3.250e-16 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
FV AD++ +DC +V+ A G +D LVN AA T R T+ T+ +++DRM NTNVRGPF L+Q K MR KG G+IVNI S
Sbjct: 61 FVRADLSNVDDCRAVVAAARETFGNVDTLVNAAATTDRGTILDTSPELFDRMFNTNVRGPFFLMQEAIKLMREKGTEGTIVNICS 145
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A526RCJ6_9HYPH (SDR family NAD(P)-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526RCJ6_9HYPH) HSP 1 Score: 76.6 bits (187), Expect = 8.760e-16 Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
F+ ADVA+ DC R V A G ++ LVN AA +AR +L TT DV+D++ +TNVRGPF L+Q + + ++ PGSIVN+
Sbjct: 21 FISADVARVADCKRAVDTAIAHFGTLNALVNAAATSARGSLIETTEDVFDQIFDTNVRGPFFLMQGLVAHLLARKAPGSIVNV 103
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: UPI001CA9B898 (SDR family oxidoreductase n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA9B898) HSP 1 Score: 77.8 bits (190), Expect = 1.920e-15 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
F+P D+A + +V G IDGL NCAA T R+TLDTTT +++DR+M NVR P L +Q + MR +G PG+I+NI
Sbjct: 59 FLPGDLADADTARAVVLRTVECYGRIDGLANCAASTERSTLDTTTPELFDRIMAVNVRAPLLSMQEAIRDMRGRGEPGAILNI 141
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: H0TFD6_9BRAD (Short-chain dehydrogenase/reductase SDR n=10 Tax=Bradyrhizobium TaxID=374 RepID=H0TFD6_9BRAD) HSP 1 Score: 77.8 bits (190), Expect = 2.420e-15 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
FV AD+AK EDC+R+V+EAD G +D LVN A T+R T+ T+ +++DR+ N R PF L+Q K MR G+IVNISS
Sbjct: 61 FVRADLAKTEDCARVVAEADRAFGHVDALVNAAGDTSRGTIIDTSPELFDRIFAINTRAPFFLMQDTVKLMRRDKVQGTIVNISS 145
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A2A2VEP2_9BRAD (NAD(P)-dependent oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2A2VEP2_9BRAD) HSP 1 Score: 76.6 bits (187), Expect = 6.580e-15 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
+V AD+AK EDC+++V+EAD G +D LVN A T+R T+ T +++DR+ N R PFLL+Q K MR G+IVNISS
Sbjct: 61 YVRADLAKIEDCAKVVAEADTAFGRVDALVNAAGDTSRGTIIDTKPELFDRIFAVNARAPFLLMQDTIKLMRRDKVQGTIVNISS 145
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A4Y9M2F4_9BRAD (SDR family oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Y9M2F4_9BRAD) HSP 1 Score: 76.6 bits (187), Expect = 6.580e-15 Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
FV AD++K EDC ++++AD+ G +D LVN A T R T+ T+ +++D++ N NVRGPF L+Q K MR + G+IVNI S
Sbjct: 61 FVAADLSKVEDCRAVIAKADVEFGRVDVLVNAAGVTDRGTILDTSPELFDKIFNVNVRGPFFLMQETIKIMRREKIAGNIVNIGS 145 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11171.1030.1 >prot_Ecto-sp13_S_contig11171.1030.1 ID=prot_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp FFFVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVback to top mRNA from alignment at Ecto-sp13_S_contig11171:4396..5419+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11171.1030.1 ID=mRNA_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1024bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:4396..5419+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11171:4396..5419+ >mRNA_Ecto-sp13_S_contig11171.1030.1 ID=mRNA_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:4396..5419+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |