mRNA_Ecto-sp13_S_contig11171.1030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11171.1030.1
Unique NamemRNA_Ecto-sp13_S_contig11171.1030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: D8LTE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE4_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 3.310e-51
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 FFFVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            FFFVPADVAKEEDCSRLVSEAD LMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKG PGSIVNISS
Sbjct:   88 FFFVPADVAKEEDCSRLVSEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISS 174          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A6H5KWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.300e-35
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   73 MGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            MGCIDGLVNCAAWTARATLDTTTV+VWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS
Sbjct:    1 MGCIDGLVNCAAWTARATLDTTTVEVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 63          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A7V0NU82_9ACTN (SDR family oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A7V0NU82_9ACTN)

HSP 1 Score: 81.3 bits (199), Expect = 1.210e-16
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            FVP ++A  + C  LV+  D   G +D LVN A  + R ++  TTV++WD +MN NVR PFLL+Q V K MR +G  G+IVN++S
Sbjct:   61 FVPVELADADSCKALVAATDDRFGRVDVLVNAAGLSLRGSIIDTTVELWDTLMNVNVRAPFLLMQGVIKIMRREGIAGTIVNVAS 145          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A2P7RZB0_9HYPH (Short-chain dehydrogenase n=1 Tax=Mesorhizobium ephedrae TaxID=2116701 RepID=A0A2P7RZB0_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 2.170e-16
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
            F+ ADV++  +C+R V+EA    G I+GLVN AA +AR +L  TT +++D + NTNVRGPF L+Q V K +     PGSIVN+
Sbjct:   64 FIGADVSEPANCARAVAEATERFGTINGLVNAAASSARGSLTETTPELFDFLFNTNVRGPFFLMQGVVKGLLQARAPGSIVNV 146          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: B9BHF0_9BURK (Short-chain dehydrogenase/reductase SDR n=5 Tax=Burkholderia TaxID=32008 RepID=B9BHF0_9BURK)

HSP 1 Score: 80.1 bits (196), Expect = 3.250e-16
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            FV AD++  +DC  +V+ A    G +D LVN AA T R T+  T+ +++DRM NTNVRGPF L+Q   K MR KG  G+IVNI S
Sbjct:   61 FVRADLSNVDDCRAVVAAARETFGNVDTLVNAAATTDRGTILDTSPELFDRMFNTNVRGPFFLMQEAIKLMREKGTEGTIVNICS 145          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A526RCJ6_9HYPH (SDR family NAD(P)-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526RCJ6_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 8.760e-16
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
            F+ ADVA+  DC R V  A    G ++ LVN AA +AR +L  TT DV+D++ +TNVRGPF L+Q +   + ++  PGSIVN+
Sbjct:   21 FISADVARVADCKRAVDTAIAHFGTLNALVNAAATSARGSLIETTEDVFDQIFDTNVRGPFFLMQGLVAHLLARKAPGSIVNV 103          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: UPI001CA9B898 (SDR family oxidoreductase n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA9B898)

HSP 1 Score: 77.8 bits (190), Expect = 1.920e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNI 255
            F+P D+A  +    +V       G IDGL NCAA T R+TLDTTT +++DR+M  NVR P L +Q   + MR +G PG+I+NI
Sbjct:   59 FLPGDLADADTARAVVLRTVECYGRIDGLANCAASTERSTLDTTTPELFDRIMAVNVRAPLLSMQEAIRDMRGRGEPGAILNI 141          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: H0TFD6_9BRAD (Short-chain dehydrogenase/reductase SDR n=10 Tax=Bradyrhizobium TaxID=374 RepID=H0TFD6_9BRAD)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-15
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            FV AD+AK EDC+R+V+EAD   G +D LVN A  T+R T+  T+ +++DR+   N R PF L+Q   K MR     G+IVNISS
Sbjct:   61 FVRADLAKTEDCARVVAEADRAFGHVDALVNAAGDTSRGTIIDTSPELFDRIFAINTRAPFFLMQDTVKLMRRDKVQGTIVNISS 145          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A2A2VEP2_9BRAD (NAD(P)-dependent oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2A2VEP2_9BRAD)

HSP 1 Score: 76.6 bits (187), Expect = 6.580e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            +V AD+AK EDC+++V+EAD   G +D LVN A  T+R T+  T  +++DR+   N R PFLL+Q   K MR     G+IVNISS
Sbjct:   61 YVRADLAKIEDCAKVVAEADTAFGRVDALVNAAGDTSRGTIIDTKPELFDRIFAVNARAPFLLMQDTIKLMRRDKVQGTIVNISS 145          
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Match: A0A4Y9M2F4_9BRAD (SDR family oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Y9M2F4_9BRAD)

HSP 1 Score: 76.6 bits (187), Expect = 6.580e-15
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    7 FVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS 261
            FV AD++K EDC  ++++AD+  G +D LVN A  T R T+  T+ +++D++ N NVRGPF L+Q   K MR +   G+IVNI S
Sbjct:   61 FVAADLSKVEDCRAVIAKADVEFGRVDVLVNAAGVTDRGTILDTSPELFDKIFNVNVRGPFFLMQETIKIMRREKIAGNIVNIGS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11171.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE4_ECTSI3.310e-5197.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ8_9PHAE1.300e-3598.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V0NU82_9ACTN1.210e-1647.06SDR family oxidoreductase n=2 Tax=Bacteria TaxID=2... [more]
A0A2P7RZB0_9HYPH2.170e-1649.40Short-chain dehydrogenase n=1 Tax=Mesorhizobium ep... [more]
B9BHF0_9BURK3.250e-1650.59Short-chain dehydrogenase/reductase SDR n=5 Tax=Bu... [more]
A0A526RCJ6_9HYPH8.760e-1646.99SDR family NAD(P)-dependent oxidoreductase (Fragme... [more]
UPI001CA9B8981.920e-1546.99SDR family oxidoreductase n=1 Tax=Dactylosporangiu... [more]
H0TFD6_9BRAD2.420e-1549.41Short-chain dehydrogenase/reductase SDR n=10 Tax=B... [more]
A0A2A2VEP2_9BRAD6.580e-1548.24NAD(P)-dependent oxidoreductase n=2 Tax=Bradyrhizo... [more]
A0A4Y9M2F4_9BRAD6.580e-1545.88SDR family oxidoreductase n=2 Tax=Bradyrhizobium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11171contigEcto-sp13_S_contig11171:4396..5419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score171.8
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D8LTE4
Preferred nameTR-1
Model size261
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.206
Cds size261
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462581.2941082-CDS-Ecto-sp13_S_contig11171:4395..44881681462581.2941082-CDS-Ecto-sp13_S_contig11171:4395..4488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 4396..4488 +
1681462581.3102336-CDS-Ecto-sp13_S_contig11171:4818..49261681462581.3102336-CDS-Ecto-sp13_S_contig11171:4818..4926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 4819..4926 +
1681462581.3216107-CDS-Ecto-sp13_S_contig11171:5359..54191681462581.3216107-CDS-Ecto-sp13_S_contig11171:5359..5419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 5360..5419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11171.1030.1prot_Ecto-sp13_S_contig11171.1030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11171 4396..5419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11171.1030.1

>prot_Ecto-sp13_S_contig11171.1030.1 ID=prot_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
FFFVPADVAKEEDCSRLVSEADILMGCIDGLVNCAAWTARATLDTTTVDV
WDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISS
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mRNA from alignment at Ecto-sp13_S_contig11171:4396..5419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11171.1030.1 ID=mRNA_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1024bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:4396..5419+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTCTTCGTGCCGGCGGACGTTGCCAAAGAGGAAGACTGCTCCAGACT GGTGTCGGAGGCAGATATACTCATGGGTTGCATCGATGGTTTGGTGAGAG TCTACGAGTACTTTTCCCTGGGGTGTGCATGTAGCTCCTGTGTTTGGTTA CACCCCTCAAGAGCGGTTCCTGCAATTTCACCTGAACTGACTCCGATTGC ATTCCCAGTCTACCCTGCTGTTGCCATGAAGTTCTAGGTCTAAATATACC TGTTGCAGTTATGAACCGCATATCAACAATCTTCACGCGTGTGATTTGCT TTTTTGAGCGTTCGCGTTCGACCCCCCTCGCTCAGGAAGACTTTTCTCCT TGCGATGGATCAATCTACCTCGATCTAGCCAAATCGAACGATTCGGGTGC ATGTTTTTACGTGTGTGCGCCAGGTGAATTGTGCCGCATGGACAGCACGA GCAACGCTCGACACCACGACGGTTGACGTGTGGGATCGCATGATGAACAC GAATGTCCGGGGTCCGTTCCTCTTGGTCCAGGTGGGGCGCTCTTACTGAT CGTGTGGCACGACAGAGGGCGGCGGGAATTCCTGAGGCGCATGTAGTGGG GACCTCCTGCGCTTCGACACGAAACCCGATCTATTCAAAATCCCCGAGCA GTTCTGCAGGGTGTTGTTTTTTCGAGAGCTTGCATGTTTTGCTGGTGTGG GTCGCTCGAGCACGTGTCTGCACGGCATACTTCATGAGACAAAACAAGCG GAGCCGAACAGATCCGTGATTTCTAAAGTCGCGCGGTACGTGTCTTGATA CAGGTCTTGCCGCTCTCAGTGTCTTGCACACGTTAGCGCTAATAAACATG TGCGTGGATTGCCCCGAGACTATTTTCTTGTCATAATTGGGAAGATCTCC CGCCCCTCCAAATTTAGAACGGCGCTGTTTAGTTTTGTGAAATTCTTCCG TCTATCGTTTCCAGGCAGTGTCCAAGTCGATGAGGAGTAAAGGTCATCCA GGATCGATCGTCAACATCTCGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11171:4396..5419+

>mRNA_Ecto-sp13_S_contig11171.1030.1 ID=mRNA_Ecto-sp13_S_contig11171.1030.1|Name=mRNA_Ecto-sp13_S_contig11171.1030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:4396..5419+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTCTTCGTGCCGGCGGACGTTGCCAAAGAGGAAGACTGCTCCAGACT
GGTGTCGGAGGCAGATATACTCATGGGTTGCATCGATGGTTTGGTGAATT
GTGCCGCATGGACAGCACGAGCAACGCTCGACACCACGACGGTTGACGTG
TGGGATCGCATGATGAACACGAATGTCCGGGGTCCGTTCCTCTTGGTCCA
GGCAGTGTCCAAGTCGATGAGGAGTAAAGGTCATCCAGGATCGATCGTCA
ACATCTCGAGT
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