mRNA_Ecto-sp13_S_contig11171.1029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11171.1029.1
Unique NamemRNA_Ecto-sp13_S_contig11171.1029.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: D8LTE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE4_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.160e-47
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MSAPTDPLAFPASAGPTAQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSCR 261
            MSAPTDPLAFPASAGPTAQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARS+DTGEKAVAQLTEHTPSCR
Sbjct:    1 MSAPTDPLAFPASAGPTAQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSQDTGEKAVAQLTEHTPSCR 87
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: K0SGH0_THAOC (KR domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGH0_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 1.610e-9
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   67 PPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPS 255
            PPLS P+ DV+G+ FVVTGGTQG+GL I+  + + GAS V + +RS    E A+ ++ +H PS
Sbjct:    3 PPLSHPSLDVSGRFFVVTGGTQGLGLEIAKQLKQCGASGVVLVSRSPSKAEAAIREIGDHCPS 65
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A6V1MI94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MI94_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 2.620e-9
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   70 PLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSCRA 264
            PLS P+FDVTGK F+VTGG QG+G  I+ C+A  GA+ V I+ RS++ GEK  + +     +C+A
Sbjct:   58 PLSKPSFDVTGKNFIVTGGGQGLGRNIAECLAAQGAAGVLITCRSEEQGEKVKSYINSTNTNCQA 122
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: K0TJ38_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJ38_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-8
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   67 PPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPS 255
            PPLS P+ DV+G+ FVVTGGTQG+GL I+  + + GAS V + +RS    E A+ ++ +H PS
Sbjct:    3 PPLSHPSLDVSGRFFVVTGGTQGLGLEIAKQLKQCGASGVVLVSRSPSKAEAAIREIGDHCPS 65
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A7S1APH9_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1APH9_NOCSC)

HSP 1 Score: 58.9 bits (141), Expect = 3.880e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   64 APPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHT 249
            APPLS PTFD++G  ++VTGGTQG+GL I+  +   GA  + + AR++  GE AVA+L+  T
Sbjct:   12 APPLSRPTFDLSGGHYIVTGGTQGLGLEIARQLKATGAGKLVLMARTRSRGEAAVAELSNAT 73
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A7S4R1D7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R1D7_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 8.240e-8
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   52 AQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQL 237
            A +  PPLS P+FD++GK ++VTGGTQG+GL I+  +   GA+ + + +R+K  GE AVA+L
Sbjct:   35 APRGGPPLSRPSFDLSGKHYIVTGGTQGLGLEIARQLKALGAAKLALMSRTKAKGEAAVAEL 96
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A7S2HYS1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYS1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.660e-5
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   67 PPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSC 258
            P LS    DVTG++FVVTGGTQG+GL I+  +   GA+ + + +RS+  GEK   +L     SC
Sbjct:    6 PTLSATNLDVTGRVFVVTGGTQGLGLAIARFLKGNGAAGLVLVSRSQAKGEKVCKELQGDDGSC 69
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A6V2PCJ6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PCJ6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.270e-5
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   67 PPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHT 249
            P LS     V+G++FV+TGGTQG+GL I+  +   GA+ + + +RSK+ GEK   +L E+T
Sbjct:    8 PKLSATGLGVSGRVFVITGGTQGLGLAIARYLKGNGAAGLVLVSRSKEKGEKVCKELEENT 68
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A7S3L6V1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6V1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.150e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   67 PPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSCR 261
            PPLS P++ V G+ FV+TGGTQG+GL I+  +   GA  + I +R+++ G +   +LT     CR
Sbjct:    8 PPLSPPSYRVDGRAFVITGGTQGLGLGIAKQLQMCGAKGLVIVSRNREKGAQVCQELTTDKCVCR 72
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BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Match: A0A7W7G2G2_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Actinoplanes abujensis TaxID=882441 RepID=A0A7W7G2G2_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 3.290e-5
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   58 KDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSCRAS 267
            + AP L++P  D+TGK+ VVTG + GMGL I+A +AKAGA  V +  R++  GEKA+A++ +  P    S
Sbjct:    3 RTAPDLTIP--DLTGKIAVVTGASDGMGLGIAARLAKAGAEVV-MPVRNRLKGEKAIARIKQEHPKAAVS 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11171.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LTE4_ECTSI2.160e-4798.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0SGH0_THAOC1.610e-949.21KR domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A6V1MI94_HETAK2.620e-949.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0TJ38_THAOC1.110e-849.21Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1APH9_NOCSC3.880e-850.00Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S4R1D7_9DINO8.240e-848.39Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2HYS1_9STRA1.660e-545.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V2PCJ6_9STRA2.270e-544.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3L6V1_9STRA3.150e-541.54Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7W7G2G2_9ACTN3.290e-545.71NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11171contigEcto-sp13_S_contig11171:2646..4103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D8LTE4
Preferred nameTR-1
Model size294
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_006020.1
EC1.1.1.206
Cds size294
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462581.2318697-CDS-Ecto-sp13_S_contig11171:2645..27451681462581.2318697-CDS-Ecto-sp13_S_contig11171:2645..2745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 2646..2745 +
1681462581.2484055-CDS-Ecto-sp13_S_contig11171:3442..35001681462581.2484055-CDS-Ecto-sp13_S_contig11171:3442..3500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 3443..3500 +
1681462581.267267-CDS-Ecto-sp13_S_contig11171:3967..41031681462581.267267-CDS-Ecto-sp13_S_contig11171:3967..4103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11171 3968..4103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11171.1029.1prot_Ecto-sp13_S_contig11171.1029.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11171 2646..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11171.1029.1

>prot_Ecto-sp13_S_contig11171.1029.1 ID=prot_Ecto-sp13_S_contig11171.1029.1|Name=mRNA_Ecto-sp13_S_contig11171.1029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MSAPTDPLAFPASAGPTAQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVI
SACIAKAGASAVTISARSKDTGEKAVAQLTEHTPSCRASGGTMRSKP*
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mRNA from alignment at Ecto-sp13_S_contig11171:2646..4103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11171.1029.1 ID=mRNA_Ecto-sp13_S_contig11171.1029.1|Name=mRNA_Ecto-sp13_S_contig11171.1029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:2646..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGCCCCAACGGATCCCCTGGCGTTCCCTGCCTCGGCCGGCCCGAC
CGCCCAGAAGGACGCACCACCCTTGTCCGTTCCCACGTTTGACGTGACAG
GTGCGTTTTATTTGGTAGATGCAAACACCCTCTTACCTTTCGGATGTCAA
TTCGACGTAGGTGCTGATTTGTGCAATTCTGGCAAGTTGCGAGAAAAAAC
CGGTTGACACCTTGATTTACGGCGTAGACACGGACTGGCTCTCTCTTACG
TATCGTCCGCATGTAGTATCCAGCAAGCACGAGCAGTGGAGCTTGTTCAA
GTATCAACCGCAACTTCGGGTCGTTGTGCCTCATCATGTGGGTGTTTCCA
GCAATGCTGTGGGGAAATAGATGTCTTCGCCCTATCACCGTACAGAAGTG
GGGCATGATGATACAGTGTGTGTTGTGTTATACGTGTACTGATGACGGGC
GTACATTGGTGTGTGTTGGCTGTTTCTCTGTCTCTGTCTTGATGTCTCGG
TGTGTTTCTCTCCCCTCACTGAGGCACGGTTGGGACCTTCGCACATAACA
CTGCTGGCAGCTGCAGTAGTGCCACCGCAACTATTTAATCCTCAGAGAAG
CCAAAGTGCACGGCCTGAAAAAGTTGGATTTTGAATAACACCGACAACAG
AGCGATGTCCCAGAGCGAGCAAGATGTGTCTGAACAGGGCAGTGCGACTC
TCTGATCTACGTGTAGGCTTCCACATCCAAATCTTTCTGCTTCGTGTCGT
GTCGTGTCCTACACACCCTGTCTCGTGGTTTGTGCTACCTGGAACAGGAA
AAATGTTCGTGGTTACCGGAGGCACTCAAGGAATGGGCCTCGTAATCTCG
GCCTGGTATGAACCTTGCGGTGTGCTTGACAATCATACTATTGGATCCCA
TGTGACAGTCCGTCGGTAGCGCCGCCACAACGACTGTGTACAACACGCCG
GCACCCTATTTCGCATTGGCAATTCTGTAGGAAGGACAAGAGAGACGCTA
CAGGTTGAAGGCGAGTGAGAACCGGGAGAGGGCGTACAGACTGGATGATA
GAGCATAACGCTACCAGTTTCGAGATCTCAAGCCGTTTCAATTCGGTTGT
AGCCATTCTGGAAAGAATTCATAAACATATGTTGCTTGTGCACCAGCCCT
TATTCTTTTTGCAGAGCTGAAGCTTTGGCTAGGCCGCACCAACAACCTAT
GAACGAGGCCTCGACGTCTCAACCCCTTGCTGTTTTATCGCCACGGCAAG
CTTCCTCATTCGCTGAAGACACCAACTGATGCGTACGCCCTCCGCTCTCG
CTCGTTCGATCGTGGCGATAAGCATCGCCAAAGCGGGCGCAAGCGCCGTG
ACCATCAGCGCGCGGAGCAAGGATACGGGAGAGAAGGCCGTCGCTCAACT
AACCGAGCATACACCATCTTGCCGGGCAAGTGGTGGAACCATGAGGTCGA
AACCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11171:2646..4103+

>mRNA_Ecto-sp13_S_contig11171.1029.1 ID=mRNA_Ecto-sp13_S_contig11171.1029.1|Name=mRNA_Ecto-sp13_S_contig11171.1029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11171:2646..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGCCCCAACGGATCCCCTGGCGTTCCCTGCCTCGGCCGGCCCGAC
CGCCCAGAAGGACGCACCACCCTTGTCCGTTCCCACGTTTGACGTGACAG
GAAAAATGTTCGTGGTTACCGGAGGCACTCAAGGAATGGGCCTCGTAATC
TCGGCCTGCATCGCCAAAGCGGGCGCAAGCGCCGTGACCATCAGCGCGCG
GAGCAAGGATACGGGAGAGAAGGCCGTCGCTCAACTAACCGAGCATACAC
CATCTTGCCGGGCAAGTGGTGGAACCATGAGGTCGAAACCTTAA
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