mRNA_Ecto-sp13_S_contig1117.1027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Match: D8LCP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP5_ECTSI) HSP 1 Score: 684 bits (1766), Expect = 4.210e-247 Identity = 361/393 (91.86%), Postives = 374/393 (95.17%), Query Frame = 1
Query: 1 MLLQMILDSRDLMDSPDGITHRMGSLGGLGDPSRSTGPATSAAGKAGGGMNAEDCGAVFAQRIGVIFCALFNMFVDAEVLATVWDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRVHLREGKLDPFPLLREDTPAKRRGPCKLVNPLLLVTERKGAASTLHYGAFPLDAFNTGASLGKLRPQSFQDEYGRQAPTVSKPREMNSQLGGGGSRVTSIPTSVAQEAWLSAALEELAQMCGALLRATATSNADSSAGSRLSINVHVGDALNFCDTLLACESPVGGSADADGDTPKESATRGSPAAFQQDTLQPLHLRAGAVTDFDVISSSNLADYLGIINVVVVSAPLLKAHHHAVLLTSFISTLRSSNLFKGTQEFYEKLLCMNSHTAAVLL 1179
MLLQMILDSRDLMDSPD ITHRMGSLGGLGDPSRST PATSAAGKAGGGM+AE+CGAVFAQRIGVIFCALFNMFVDAEVLAT+ DVAGRLAASAASPAEWASTELG FVHFSDDRS+DRVHLREG LDPFPLL EDTPAKRRGPCKLVNPLLLVTERKGAAS+LHYGAFPLDAFNT ASL KLRPQSFQDEYG+QAPTV+KPREMNSQ+GGGGSRVTSIPTSVAQ+AWLSAALEELAQMCGALLRATATSNADSS GSRLSINVHVGDALNFCD LLAC P GSADADGD PK SATRGSP AFQQDTLQPLHL AGAVT+FDVISSSNLADYLGIINVVV SAPLLKAHHHAVLLTSFISTL+SSNLF+GTQEFYEKLLCMN+HTAAVLL
Sbjct: 1 MLLQMILDSRDLMDSPDSITHRMGSLGGLGDPSRSTEPATSAAGKAGGGMDAEECGAVFAQRIGVIFCALFNMFVDAEVLATILDVAGRLAASAASPAEWASTELGGFVHFSDDRSRDRVHLREGILDPFPLLCEDTPAKRRGPCKLVNPLLLVTERKGAASSLHYGAFPLDAFNT-ASLWKLRPQSFQDEYGQQAPTVTKPREMNSQIGGGGSRVTSIPTSVAQQAWLSAALEELAQMCGALLRATATSNADSSTGSRLSINVHVGDALNFCDALLACAPPTRGSADADGDAPKVSATRGSPVAFQQDTLQPLHLWAGAVTEFDVISSSNLADYLGIINVVVASAPLLKAHHHAVLLTSFISTLKSSNLFQGTQEFYEKLLCMNAHTAAVLL 392
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Match: A0A6H5JFV6_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV6_9PHAE) HSP 1 Score: 498 bits (1282), Expect = 8.070e-164 Identity = 299/459 (65.14%), Postives = 307/459 (66.88%), Query Frame = 1
Query: 1 MLLQMILDSRDLMDSPDGITHRMGSLGGLGDPSRSTGPATSAAGKAGGGMNAEDCGAVFAQRIGVIFCALFNMFVDAEVLATVWDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRV------------------------------------------------------------------HLREGKLDPFPLLREDTPAKRRGPCKLVNPLLLVTERKGAASTLHYGAFPLDAFNTGASLGKLRPQSFQDEYGRQAPTVSKPREMNSQLGGGGSRVTSIPTSVAQEAWLSAALEELAQMCGALLRATATSNADSSAGSRLSINVHVGDALNFCDTLLACESPVGGSADADGDTPKESATRGSPAAFQQDTLQPLHLRAGAVTDFDVISSSNLADYLGIINVVVVSAPLLKAHHHAVLLTSFISTLRSSNLFKGTQEFYEKLLCMNSHTAAVLL 1179
MLLQMILDSR LMD PDGITHRMGSL GLGDPSRSTGPATSAAGK GGGM+AEDCGAVFAQRIGVIFCALFNMFVDAEVLAT+ DVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRV +LREG LDPFPLLREDTPAKRRGPCKLVNPLLLVTERKGAAS+LHYGAFPLDAFNTG GG GSRVTSIPTS+AQEAWLS ALEELAQMCGALLR TATSNADSSAGSRLSINVHVGDALNFCDTLLAC SP GSADADGD PKESATR GIINVVV SAPLLKAH +AVLLTSFIST S+LF+GTQEFYEKLLCMNSHTAAVLL
Sbjct: 1 MLLQMILDSRGLMDVPDGITHRMGSLRGLGDPSRSTGPATSAAGKEGGGMDAEDCGAVFAQRIGVIFCALFNMFVDAEVLATIRDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRVRKIWFSYIDGSLQDNGVFMKIRQERSAFLAKYMPKGKKLNFVSRAMGLASCRLPETMEASSKMRRQYLREGILDPFPLLREDTPAKRRGPCKLVNPLLLVTERKGAASSLHYGAFPLDAFNTG--------------------------------GGEGSRVTSIPTSIAQEAWLSTALEELAQMCGALLRVTATSNADSSAGSRLSINVHVGDALNFCDTLLACASPAWGSADADGDAPKESATR------------------------------------GIINVVVASAPLLKAHRYAVLLTSFISTSHVSSLFQGTQEFYEKLLCMNSHTAAVLL 391
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI) HSP 1 Score: 325 bits (833), Expect = 4.820e-97 Identity = 226/477 (47.38%), Postives = 276/477 (57.86%), Query Frame = 1
Query: 1 MLLQMILDSRDLM----DSPDGITHRMGSLG---GLGDPSRSTGPATSAAGKAGGGMNAED--------CGAVFAQRIGVIFCALFNMFVDAEVLATVWDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRV-----------------------------------------------------------------HLREGKLDPFPLLRED-TPAKRRGPCKLVNPLLLVTERKGAASTLHYGAFPLDAFNTGASLGKLRPQSFQDEYGRQAPTVSKPREMNSQLGGGGSRVTSIPTSVAQEAWLSAALEELAQMCGALLRATATSNADSSAGSRLSINVHVGDALNFCDTLLACESPVGGSADADGDTPKESATRGSPAAFQQDTLQPLHLRAGAVT---DFDVISSSNLADYLGIINVVVVSAPLLKAHHHAVLLTSFISTLRSSNLFKGTQEFYEKLLCMNSHTAAVLL 1179
MLLQMILDSR L+ D D + M ++ G GD S S K G D GA FAQRIGVIF A++NMFVDA+ L V +VAGRLA+SAASPAEW+STELG V F+DDRSQDRV +LREG LDPFPLL E+ PA RRGP + VNPLLLVTERKGAAS+LHYGAFPLDAF+T S K+RP+S QDE+G+ A V+K R+ S G GG +V + V Q+AW ALEELAQMCGA L AT+TS SSA L I + VGD+LNFCD LL SP G+ + D T E A P +FQQ ++QPLHLRA + +FDVIS++NL ++LG++NV+V SAPLLKA HAVLLTS ++TL + + +K +F KLLCM+S A +LL
Sbjct: 99 MLLQMILDSRGLLNAEADGVDAVVRGMDTVAVDAGSGDRSIPEAAGKSVCKKKTGKKKTSDKTATKPSLSGAAFAQRIGVIFSAMYNMFVDADTLKMVHEVAGRLASSAASPAEWSSTELGRIVRFADDRSQDRVREILTNYTDHGLQEPGVFTRIRRERTAFLTKYMPKSMGNIISRAMGLSSFCQGESIEANAKMRRQYLREGILDPFPLLLEEGAPAVRRGPFRKVNPLLLVTERKGAASSLHYGAFPLDAFHTDVSWWKVRPESLQDEFGKLARRVTKHRDAGSHSGLGGPKVAN---GVRQDAWFGTALEELAQMCGAFLAATSTSV--SSAAPALGIILQVGDSLNFCDALLTA-SPSRGAVE-DCTTSAEFA----PISFQQGSVQPLHLRADVFSCQPEFDVISTNNLVEHLGMVNVLVASAPLLKALPHAVLLTSLMATLVNLHQYKDLADFQAKLLCMSSQAAGILL 564
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Match: D7FXN8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXN8_ECTSI) HSP 1 Score: 283 bits (723), Expect = 7.830e-82 Identity = 201/480 (41.88%), Postives = 256/480 (53.33%), Query Frame = 1
Query: 1 MLLQMILDSRDLMDSPDGITHRMGSL---GGLGDPSRSTGPATSAAGKAGGGMNAEDCGAVFAQRIGVIFCALFNMFVDAEVLATVWDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRVH------------------------------------------------------------------LREGKLDPFPLLRED--TPAKRRGPCKLVNPLLLVTERKGAASTLHYGAFPLDAFNTGASLGKLRPQSFQDEYGRQAPTVSKPREMNSQLGGGGS-------RVTSIPTSVAQEAWLSAALEELAQMCGALLRATATSNADSSAGSRLSINVHVGDALNFCDTLLACES--PVGGSADADGDT-PKESATRGSPAAFQQDTLQPLHLRAGAVT------DFDVISSSNLADYLGIINVVVVSAPLLKAHHHAVLLTSFISTLRSSNLFKGTQEFYEKLLCMNSHTAAVLL 1179
MLLQM LD+RD+++S T + G SR G G A FAQRIGVI+ +++N FVDAEVL + VAGRLAA+A SP+ WAS ELG V F+DD SQ RV L++G LDPFPLL ED KRRG LVNPLLLVTE KG A +LHY AFPLDAF+T KLRP++ Q E+G+ AP V+KP+ N L G G+ + T+ Q W ALEELAQMCGA +RATA +LSI +HVGDALN CD LLA + P S + +G T PK+ P QQ TLQP+ LRA A+ +FDVI++SNL+++LG++N++V +APLLK HAVLLTSF++ L++ +L+K T EFYEK LCM S +++LL
Sbjct: 123 MLLQMFLDARDILESSGSATKKKSGTKKXXXRGGNSR------------GHGSGRGSSAAAFAQRIGVIYSSMYNSFVDAEVLEMIESVAGRLAAAAESPSTWASAELGRLVRFADDCSQQRVRKILAAYADGSLQREGAAARVKRERAAVIGTYCPPRDDLSIHSRAMGLASFRQGDCMNPYAEMRREFLKKGVLDPFPLLLEDGAESGKRRGSFDLVNPLLLVTETKGMAYSLHYAAFPLDAFHTDVCWWKLRPENLQGEFGKVAPKVTKPQGFN--LAGSGATQGPFSFKPTAKTQRDTQNVWFVTALEELAQMCGAFVRATA----------KLSITIHVGDALNCCDALLAASAALPSVRSREENGVTAPKDVFP---PVFCQQGTLQPVQLRADALMTPSGFFEFDVINTSNLSEHLGVVNLLVAAAPLLKTTAHAVLLTSFMAALQNLSLYKNTSEFYEKYLCMGSQASSLLL 575
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Match: D8LNQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ6_ECTSI) HSP 1 Score: 248 bits (632), Expect = 9.800e-72 Identity = 182/422 (43.13%), Postives = 241/422 (57.11%), Query Frame = 1
Query: 1 MLLQMILDSRDLM----DSPDGITHRMGSLG---GLGDPS------RSTGPATSAAGKAGGGMNAEDC--GAVFAQRIGVIFCALFNMFVDAEVLATVWDVAGRLAASAASPAEWASTELGSFVHFSDDRSQDRV------HLREGKLDP--FPLLREDTPAKRRGPCKLVNPLLLVTERKGAASTLHYGAFPLDA-FNTGASLGKLRPQSFQDEYGRQAPTVSKPREMNSQLGGGGSRVTSIPTSVAQEAWLSAALEELAQMCGALLRATATSNADSSAGSRLSINVHVGDALNFCDTLLACESPVGGSADADGDTPKESATRG--SPAAFQQDTLQPLHLRAGAVT---DFDVISSSNLADYLGIINVVVVSAPLLKAHHHAVLLTSFISTLRSSNLFKGTQEFYEKLLCMNSHTAAVLL 1179
MLLQMILDSR L+ D D + + ++ G GD S +S G +A K G + GA FAQRIGVIF A++NMFVDA+ L V +VAG LA SAASPAEWASTELG V F+DDRSQDRV + +G +P F +R++ A + + G AS +A S KLRP+ Q ++G+ +P V+K E + G G +V + ++ Q AW ALEELAQMCGA L AT+TS A L I + VGDALNFCD LL +G T ++ AT +P +FQQ ++QPLHLRAG + FDVI++SNLA++LG +NV+V S+PLLK HAVLLTS +++ + +L+ G +F KLLCM+SHTA +LL
Sbjct: 1 MLLQMILDSRGLLNAEADGVDDVIRGVDTVAVDAGSGDRSIPEAAGKSVGKKKAAKTKTSGKTADKPSLHGAAFAQRIGVIFSAMYNMFVDADTLKMVHEVAGTLAGSAASPAEWASTELGQIVRFADDRSQDRVREILTNYTDDGLQEPRVFTRIRQERTAFLYTHMGKDTKPEIWSRAMGLASFCQGEGIEANAKMRRHLSWWKLRPERLQGDFGKLSPRVTKHLEAGAHSGPGEPKVAN---ALRQNAWFGTALEELAQMCGAFLAATSTSVPK--ATPHLDITMQVGDALNFCDALLTASPSMG--------TAEDCATSAVFAPISFQQGSVQPLHLRAGIFSYPPQFDVINTSNLAEHLGTVNVLVASSPLLKTLPHAVLLTSLLASTATLHLYDGLADFQAKLLCMSSHTAGILL 409 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1117.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1117.1027.1 >prot_Ecto-sp13_S_contig1117.1027.1 ID=prot_Ecto-sp13_S_contig1117.1027.1|Name=mRNA_Ecto-sp13_S_contig1117.1027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp MLLQMILDSRDLMDSPDGITHRMGSLGGLGDPSRSTGPATSAAGKAGGGMback to top mRNA from alignment at Ecto-sp13_S_contig1117:14838..17659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1117.1027.1 ID=mRNA_Ecto-sp13_S_contig1117.1027.1|Name=mRNA_Ecto-sp13_S_contig1117.1027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1117:14838..17659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1117:14838..17659- >mRNA_Ecto-sp13_S_contig1117.1027.1 ID=mRNA_Ecto-sp13_S_contig1117.1027.1|Name=mRNA_Ecto-sp13_S_contig1117.1027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1117:14838..17659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |