mRNA_Ecto-sp13_S_contig1117.1025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1117.1025.1
Unique NamemRNA_Ecto-sp13_S_contig1117.1025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1117.1025.1 vs. uniprot
Match: D8LCP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP3_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.170e-78
Identity = 248/393 (63.10%), Postives = 266/393 (67.68%), Query Frame = 1 
Query:    1 MALLVKRQRKLRRQGRPSPSTTSAGDSGLIMSTDPPGNVVPERSAPSKITGQIRHILEAAASLDRPFLSEVVFPDSTSLDDSASSAIARMTDLSDTHYVASARSARPKAKASCHSESRSDVSNDTTPETTTAATSSRGWKSKSCDHKGCERQPSFARDGQQPMRCASHKLDGDTNVKHRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHRDTGGLRGMCQGRDPGSAAPCRKYATFSTVKGKPMRCKGHRLADDVDVVNKMCETEGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVLNCATIVGVNRTRCKEHAT 1179
            MAL +K+Q KLR QG  SPST SAGDSGLI+STDPPGNVVP+RSA SKITGQI+HILEAA+SLDRP LSEVV  +STSLDDSASSAI+RMTDLSDT YVASARSAR  A+AS HS                                GC ++  F   G + M C +H+   + +                                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GGLRGMCQGRD GS+ PCRKYATFSTVKGKP+RCKGHRLADDVDVVNKMCE  GCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVLNC T VGVNRTRCKEHAT
Sbjct:    1 MALFIKKQWKLRGQGCRSPSTASAGDSGLIVSTDPPGNVVPQRSASSKITGQIQHILEAASSLDRPILSEVVLTESTSLDDSASSAISRMTDLSDTQYVASARSARTNAEASFHS--------------------------------GCTKRSRFGIRGMRSMHCTNHRQPDEIDPLR-------------------------------------PPCMSPGCRVTPTYSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLRGMCQGRDQGSSVPCRKYATFSTVKGKPLRCKGHRLADDVDVVNKMCEAGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVLNCTTNVGVNRTRCKEHAT 324
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1117.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCP3_ECTSI1.170e-7863.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1117contigEcto-sp13_S_contig1117:3298..5237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-03_002140.1
Cds size1182
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462580.8617933-CDS-Ecto-sp13_S_contig1117:3297..36431681462580.8617933-CDS-Ecto-sp13_S_contig1117:3297..3643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1117 3298..3643 +
1681462580.8708448-CDS-Ecto-sp13_S_contig1117:4000..42791681462580.8708448-CDS-Ecto-sp13_S_contig1117:4000..4279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1117 4001..4279 +
1681462580.8790617-CDS-Ecto-sp13_S_contig1117:4487..45751681462580.8790617-CDS-Ecto-sp13_S_contig1117:4487..4575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1117 4488..4575 +
1681462580.891891-CDS-Ecto-sp13_S_contig1117:4768..52371681462580.891891-CDS-Ecto-sp13_S_contig1117:4768..5237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1117 4769..5237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1117.1025.1prot_Ecto-sp13_S_contig1117.1025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1117 3298..5237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1117.1025.1

>prot_Ecto-sp13_S_contig1117.1025.1 ID=prot_Ecto-sp13_S_contig1117.1025.1|Name=mRNA_Ecto-sp13_S_contig1117.1025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
MALLVKRQRKLRRQGRPSPSTTSAGDSGLIMSTDPPGNVVPERSAPSKIT
GQIRHILEAAASLDRPFLSEVVFPDSTSLDDSASSAIARMTDLSDTHYVA
SARSARPKAKASCHSESRSDVSNDTTPETTTAATSSRGWKSKSCDHKGCE
RQPSFARDGQQPMRCASHKLDGDTNVKHRRCIVAGCTKRSRFGVRGMRSM
HCTNHRQPDEIDPLRPPCMSPGCRVTPTYSPPGTKPVRCTSHKLEGDVNT
NRRRCDEENCNGRPCFVNPMTGVRHCLAHFSHRDTGGLRGMCQGRDPGSA
APCRKYATFSTVKGKPMRCKGHRLADDVDVVNKMCETEGCGKRPSFSPVG
GVAKRCKSHALDGDVNVNGKKCCVLNCATIVGVNRTRCKEHAT*
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mRNA from alignment at Ecto-sp13_S_contig1117:3298..5237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1117.1025.1 ID=mRNA_Ecto-sp13_S_contig1117.1025.1|Name=mRNA_Ecto-sp13_S_contig1117.1025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1940bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1117:3298..5237+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTACTCGTCAAGAGGCAGCGGAAACTAAGGAGACAGGGTCGCCC
GAGCCCAAGCACGACATCAGCCGGGGATTCCGGGCTCATCATGTCGACTG
ACCCACCAGGAAACGTAGTGCCGGAGAGGTCTGCGCCCAGCAAGATCACA
GGGCAAATCCGACATATCCTTGAGGCGGCTGCTTCCCTCGATAGGCCGTT
TCTTTCGGAGGTAGTGTTTCCTGATTCAACATCCCTTGATGATTCGGCAT
CATCAGCCATTGCGAGAATGACAGATCTTTCGGACACGCATTACGTGGCC
AGTGCGCGTTCAGCACGCCCCAAGGCTAAGGCAAGCTGTCACTCTGGTGA
GTTCAGCCTGTGGCCTCCGACTTCACCTGAGAACCAGCAACCACTGATCA
TTTTCCCGCTGGCGGCGATGATCTGCTCTATCTTTTGGGTGTGGACAATA
CTGCTGTAGATATGTAGTCTACTATGACACTGTCACATGTGCTTTCCTGT
TTTTGTGAGCATTACAAGGAGAGAGAGCGTTTGGTCGTACATCACAAAAC
TACCAGCGCCAACGGTTGATCGATTGAATGACGAGAACACATGGGAATTC
TCGAGTACTAAATACCATGGCACCATGCCCCCGAGTGTGTCGAGAAACGT
ACCCGAAAATGTTCCTTGGCCTCTGACGTACCTCTCTCTCTCACGGTTGA
CAGAATCCCGATCAGACGTTTCCAATGACACAACACCTGAAACCACGACG
GCGGCGACATCTTCCCGCGGGTGGAAAAGCAAATCGTGTGATCACAAGGG
ATGTGAAAGGCAGCCTAGCTTTGCAAGAGACGGACAGCAACCGATGCGAT
GCGCGTCCCATAAACTTGACGGGGACACCAACGTCAAGCACCGGAGGTGC
ATCGTGGCAGGCTGCACAAAGCGTTCTCGGTTCGGGGTACGGGGCATGAG
ATCTATGCACTGCACGAACCACCGGCAACCAGGTATTTTTAAGAAGGACT
CCGACCATTGATTGCTGCATGAATTCAATTGCAAGATCGACGAACTCATT
CAAAAATGCGGGCAAGGACATGTATGCATGTTGATCAACCATGGCAAGCT
TGTTGGTCTAGACTATGCGTGTGCCACCTCGACCGGCCTTTCCCACCTCC
CCACTGCCCCGTCCCCTTCACCTGTTTCCTTCCCGACCAGACGAAATAGA
TCCTCTTCGGCCGCCATGCATGTCTCCCGGGTGCCGAGTCACTCCGACGT
ACTCCCCGCCGGGGACAAAGCCGGTCAGGTAAGTCCGATGATTACCATAT
GTAGCGGGTTACAAACCCAAATCCCACCCTTGCCGAACTTTCTCTCTCCC
CAGTACGTGCTGAACTTCTCACAAGAAGGACGTGGAATTTTTCGAAAACA
CACTCCAAATGCGCGTCGACGGTTGTACAGTAGTACGCCCAGTAACAAGA
GCGTGCGCACGCTCGGCTCAGGTGCACATCACATAAGCTTGAGGGGGACG
TGAACACCAATCGGCGAAGGTGTGACGAGGAGAATTGCAATGGCAGACCG
TGCTTCGTGAACCCCATGACGGGGGTCAGGCACTGTTTGGCCCACTTCTC
CCACCGCGACACCGGGGGCCTGCGGGGGATGTGCCAAGGTCGCGATCCGG
GCAGTGCGGCGCCGTGCAGGAAGTATGCCACATTCTCTACAGTCAAGGGG
AAACCAATGAGGTGCAAGGGGCATAGGCTGGCCGATGATGTCGACGTTGT
CAACAAGATGTGCGAAACCGAGGGGTGCGGCAAGAGGCCGAGTTTTTCTC
CAGTTGGGGGAGTGGCCAAGCGATGCAAAAGCCACGCCTTGGACGGCGAT
GTGAATGTCAACGGAAAGAAGTGTTGCGTATTGAACTGTGCTACCATTGT
GGGTGTCAATAGGACGCGATGCAAAGAGCACGCAACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1117:3298..5237+

>mRNA_Ecto-sp13_S_contig1117.1025.1 ID=mRNA_Ecto-sp13_S_contig1117.1025.1|Name=mRNA_Ecto-sp13_S_contig1117.1025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1117:3298..5237+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTACTCGTCAAGAGGCAGCGGAAACTAAGGAGACAGGGTCGCCC
GAGCCCAAGCACGACATCAGCCGGGGATTCCGGGCTCATCATGTCGACTG
ACCCACCAGGAAACGTAGTGCCGGAGAGGTCTGCGCCCAGCAAGATCACA
GGGCAAATCCGACATATCCTTGAGGCGGCTGCTTCCCTCGATAGGCCGTT
TCTTTCGGAGGTAGTGTTTCCTGATTCAACATCCCTTGATGATTCGGCAT
CATCAGCCATTGCGAGAATGACAGATCTTTCGGACACGCATTACGTGGCC
AGTGCGCGTTCAGCACGCCCCAAGGCTAAGGCAAGCTGTCACTCTGAATC
CCGATCAGACGTTTCCAATGACACAACACCTGAAACCACGACGGCGGCGA
CATCTTCCCGCGGGTGGAAAAGCAAATCGTGTGATCACAAGGGATGTGAA
AGGCAGCCTAGCTTTGCAAGAGACGGACAGCAACCGATGCGATGCGCGTC
CCATAAACTTGACGGGGACACCAACGTCAAGCACCGGAGGTGCATCGTGG
CAGGCTGCACAAAGCGTTCTCGGTTCGGGGTACGGGGCATGAGATCTATG
CACTGCACGAACCACCGGCAACCAGACGAAATAGATCCTCTTCGGCCGCC
ATGCATGTCTCCCGGGTGCCGAGTCACTCCGACGTACTCCCCGCCGGGGA
CAAAGCCGGTCAGGTGCACATCACATAAGCTTGAGGGGGACGTGAACACC
AATCGGCGAAGGTGTGACGAGGAGAATTGCAATGGCAGACCGTGCTTCGT
GAACCCCATGACGGGGGTCAGGCACTGTTTGGCCCACTTCTCCCACCGCG
ACACCGGGGGCCTGCGGGGGATGTGCCAAGGTCGCGATCCGGGCAGTGCG
GCGCCGTGCAGGAAGTATGCCACATTCTCTACAGTCAAGGGGAAACCAAT
GAGGTGCAAGGGGCATAGGCTGGCCGATGATGTCGACGTTGTCAACAAGA
TGTGCGAAACCGAGGGGTGCGGCAAGAGGCCGAGTTTTTCTCCAGTTGGG
GGAGTGGCCAAGCGATGCAAAAGCCACGCCTTGGACGGCGATGTGAATGT
CAACGGAAAGAAGTGTTGCGTATTGAACTGTGCTACCATTGTGGGTGTCA
ATAGGACGCGATGCAAAGAGCACGCAACGTAG
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