mRNA_Ecto-sp13_S_contig11166.1023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11166.1023.1
Unique NamemRNA_Ecto-sp13_S_contig11166.1023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11166.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11166contigEcto-sp13_S_contig11166:57..1504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size369
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_001050.2
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462580.7677395-UTR-Ecto-sp13_S_contig11166:56..1761681462580.7677395-UTR-Ecto-sp13_S_contig11166:56..176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11166 57..176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462580.7764525-CDS-Ecto-sp13_S_contig11166:176..3641681462580.7764525-CDS-Ecto-sp13_S_contig11166:176..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11166 177..364 +
1681462580.7844822-CDS-Ecto-sp13_S_contig11166:1443..15041681462580.7844822-CDS-Ecto-sp13_S_contig11166:1443..1504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11166 1444..1504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11166.1023.1prot_Ecto-sp13_S_contig11166.1023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11166 177..1504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11166.1023.1

>prot_Ecto-sp13_S_contig11166.1023.1 ID=prot_Ecto-sp13_S_contig11166.1023.1|Name=mRNA_Ecto-sp13_S_contig11166.1023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MYLSKTDRIQSCRVRALTSSRRSPPPGTKVQRRPANISPRTANMNPHRTA
RVGERNVKHRGGTITNRTASWGKRTQEKRGKST
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mRNA from alignment at Ecto-sp13_S_contig11166:57..1504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11166.1023.1 ID=mRNA_Ecto-sp13_S_contig11166.1023.1|Name=mRNA_Ecto-sp13_S_contig11166.1023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11166:57..1504+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTCACAAGCTCACAAGAAACAGCGGCACCAGCAGAAGATCTACAAA
GGACCACAAGAACAGATAAGGTTACGGCAAAGCAGGACTTATCCCATTAA
GTACCCAGCGTCCGAGTACGATGTATCTGTCAAAGACAGATAGAATACAG
TCGTGTCGGGTGAGAGCCCTCACGAGCTCAAGACGCTCGCCGCCGCCGGG
GACCAAGGTGCAGCGGCGGCCAGCCAATATATCGCCCAGGACGGCGAACA
TGAATCCTCATCGAACCGCACGGGTCGGCGAGCGCAACGTCAAGCACCGT
GGCGGGACGGCGGTGAGCAAAAAGGTGTGTGTAGCCTGCTGCAGGCCAGA
TCCGTGTGAGGTTGTCTTGGACGCGGACGGTCATGTGATCGAGCTCGTAT
GTCTCGGCTAATCTTTTGAAAGATCCAGAACAGAAGTACTGCAGTCATGT
CGCCACGGTGCTTGACGTTGCCCTCACCGGCCCGTGCGGTTCGATGAGGA
TTGGTGCCGGATGCTGTCCTTGCCGATCGAGATGTCGACCACCGCTGCAT
CTTTTCCCCGGAGGCGAAGGTGTTGAGCTCACATGAGCTCAAGATCTTCG
CTGCCGGGTGTCACCATGCAGCGGCGGCCGGCACCTCCATCGCCGAGGAT
AGCATCCGGTACCAATCCTCATCGAAACGCACCGGTCGGTGAGGGCAACG
TCAAGCACCGTGGTGGGACAGCAGTCAATGAAGGGTGCAGTCTACAGAGG
CCAGATCCGTGCGAGGTTGTCTTGACGGACGGCATCGTGTGTAGGAGCTC
GCGTTAATTACGTATTTCTCGGCTGATCTCCTCGAGAGACAGAACAGAAA
ACACATGCACTAAACCATGCCGCCACGGCGCTTGCTTGACCTTGCCGTCG
GCCTGTGCGACTCGATTGGTGGCAATGGCGTCGAGTGTTGGCTGTCTTCA
GCGATAGCTGTGCTGGGCGCCGCTGCATGCGGATCCCCGGTGTCGAAGGT
CTGGCGCTCGTGTTGAACACCAGCTCAGTACCTTCGCCGCGGAGGATCAA
CATGCAACGGCGACCATCAAAGACACGCTGAAGGCGGCACCCGAACCGAA
TACCAATCGAACCTCGCTGGCAGAGAGCAAGATGAAGCACTGTGGCGACA
CGGTGAACGAGGTTGTCGACGAGATCGATGTCGGGTTGCCATGCATGGTG
GTATCACGTAAGGAGTTCGTGTAAATTCATTTCTCGGCGGATCTTCTCCT
GAAGAGAGAGGAGAAAAAAGTTCACTACAATCATCGCCGCTCGGTCGCTG
TACATGGGGCGTGCAATCTCGTACGCATTACATCGCGGCTACTTACTTAT
TTTAATCCCATGGTCCACCTACCCTCCTGCCAAAAAAAATCACAAACAGG
ACTGCATCGTGGGGAAAGCGGACGCAAGAAAAGCGGGGCAAGAGCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11166:57..1504+

>mRNA_Ecto-sp13_S_contig11166.1023.1 ID=mRNA_Ecto-sp13_S_contig11166.1023.1|Name=mRNA_Ecto-sp13_S_contig11166.1023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11166:57..1504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCTGTCAAAGACAGATAGAATACAGTCGTGTCGGGTGAGAGCCCT
CACGAGCTCAAGACGCTCGCCGCCGCCGGGGACCAAGGTGCAGCGGCGGC
CAGCCAATATATCGCCCAGGACGGCGAACATGAATCCTCATCGAACCGCA
CGGGTCGGCGAGCGCAACGTCAAGCACCGTGGCGGGACAATCACAAACAG
GACTGCATCGTGGGGAAAGCGGACGCAAGAAAAGCGGGGCAAGAGCACG
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