mRNA_Ecto-sp13_S_contig11163.1021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11163.1021.1
Unique NamemRNA_Ecto-sp13_S_contig11163.1021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11163.1021.1 vs. uniprot
Match: D7FQ48_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ48_ECTSI)

HSP 1 Score: 538 bits (1387), Expect = 4.680e-180
Identity = 416/465 (89.46%), Postives = 418/465 (89.89%), Query Frame = 1 
Query:    1 ALDAVGKLSPVANVALAAAPLSRLPXXXXXXXXXXXAVALRASFVAEILSVPLLPSRLGVDDVKLLLKERAEAFFDCLRDFRVEMVAAAATXXXXXXXXXXXXXXXXXXXXXXXGPGAEEGNRRSGGXXXXAGHWGAFHLPPPPVSCCSTEAFLLGNVVAMGTKISVEGGGXXXXXXXINAGGPMTASAARRGQREFMRAVTSLLELRAIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKLLQRCTEAERLENKEILESNAANLAVASVQSQRAEANRGFVSKWAEKLLKTSKKWFSVPDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RGGVVDPADRPHAYDADSVLALSELLGVLLRRWGTGANASNQVMQA 1386
            ALDAVG LSP A VALAAAPLSR PXXXXXXXX   AV LRASFVAEILSVPLLPSRLGVD V LLLKERAEAFFDCLRDFRVEMVAAAA                XXXXX    PGAEEG RRS G    AGHWGAFHLPPPPVSCCSTEAFLLGNVVAMGTKISVEG  XXXXXXXI+AGGPMTASAARRGQREFMRAVTSLLELRAIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEK LQRCTEAERLENKE+LESNAANLAVASVQS RAEANRGFVSKWAEKLLKTSKKWFS PDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RGGVVDPADRPHAYDADSVLALSELLGVLLRRWGTGANASNQVMQA
Sbjct:  296 ALDAVGSLSPAATVALAAAPLSRSPXXXXXXXX---AVPLRASFVAEILSVPLLPSRLGVDGVNLLLKERAEAFFDCLRDFRVEMVAAAAYAAADGEGGGKGRAKGXXXXXSD--PGAEEGKRRSRGGAGGAGHWGAFHLPPPPVSCCSTEAFLLGNVVAMGTKISVEGXXXXXXXXXIDAGGPMTASAARRGQREFMRAVTSLLELRAIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKSLQRCTEAERLENKEVLESNAANLAVASVQSHRAEANRGFVSKWAEKLLKTSKKWFSSPDQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGGVVDPADRPHAYDADSVLALSELLGVLLRRWGTGANASNQVMQA 755
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BLAST of mRNA_Ecto-sp13_S_contig11163.1021.1 vs. uniprot
Match: A0A6H5KXV6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV6_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 1.720e-98
Identity = 249/258 (96.51%), Postives = 253/258 (98.06%), Query Frame = 1 
Query:  625 AIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKLLQRCTEAERLENKEILESNAANLAVASVQSQRAEANRGFVSKWAEKLLKTSKKWFSVPDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGVVDPADRPHAYDADSVLALSELLGVLLRRWGTGANASNQVMQARCWV 1398
            AIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEK LQRCTEAERLENKE+LESNAANLAVASVQS RAEANRGFVSKWAEKLLKTSKKWFS PDQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGG++DP DRPHAYDADSVLALSELLGVLLRRWGTGAN+SNQVMQARCWV
Sbjct:    2 AIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKSLQRCTEAERLENKEVLESNAANLAVASVQSHRAEANRGFVSKWAEKLLKTSKKWFSAPDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGIIDPVDRPHAYDADSVLALSELLGVLLRRWGTGANSSNQVMQARCWV 259
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BLAST of mRNA_Ecto-sp13_S_contig11163.1021.1 vs. uniprot
Match: A0A6H5KX73_9PHAE (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX73_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 3.610e-76
Identity = 162/232 (69.83%), Postives = 165/232 (71.12%), Query Frame = 1 
Query:    1 ALDAVGKLSPVANVALAAAPLSRLPXXXXXXXXXXXAVALRASFVAEILSVPLLPSRLGVDDVKLLLKERAEAFFDCLRDFRVEMVAAAATXXXXXXXXXXXXXXXXXXXXXXXGPGAEEGNRRSGGXXXXAGHWGAFHLPPPPVSCCSTEAFLLGNVVAMGTKISVEGGGXXXXXXXINAGGPMTASAARRGQREFMRAVTSLLELRAIPESLLTDRQAITWQSQDGASGG 696
            ALDAVG LSP A VALAA+PLSR P           AV LRASFVAEILSVPLLPSRLGVD V LLLKERAEAFFDCLRDFRVEMVAAAA              XXXXXXXX  GPGAEEGN RS G    AGHWG FHLPPPPVSCCSTEAFLLGNVVAMGTKIS EGGG       INAG PMTASAARRGQREFMRAVTSLLELR          +  TW+   G  GG
Sbjct:  296 ALDAVGSLSPAATVALAASPLSRSPPPPSAATA---AVPLRASFVAEILSVPLLPSRLGVDGVNLLLKERAEAFFDCLRDFRVEMVAAAAADGERGGKGRAQSAXXXXXXXX--GPGAEEGNMRSRGGAGGAGHWGTFHLPPPPVSCCSTEAFLLGNVVAMGTKISAEGGGGVGGGGRINAGAPMTASAARRGQREFMRAVTSLLELRV---------RGQTWRGGVGVGGG 513
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11163.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQ48_ECTSI4.680e-18089.46HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5KXV6_9PHAE1.720e-9896.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KX73_9PHAE3.610e-7669.83HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11163contigEcto-sp13_S_contig11163:2625..5361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1398
Hectar predicted targeting categoryother localisation
Exons4
Cds size1398
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462580.617002-CDS-Ecto-sp13_S_contig11163:2624..30921681462580.617002-CDS-Ecto-sp13_S_contig11163:2624..3092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11163 2625..3092 -
1681462580.6292386-CDS-Ecto-sp13_S_contig11163:3318..34951681462580.6292386-CDS-Ecto-sp13_S_contig11163:3318..3495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11163 3319..3495 -
1681462580.641507-CDS-Ecto-sp13_S_contig11163:3835..39641681462580.641507-CDS-Ecto-sp13_S_contig11163:3835..3964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11163 3836..3964 -
1681462580.6528337-CDS-Ecto-sp13_S_contig11163:4737..53611681462580.6528337-CDS-Ecto-sp13_S_contig11163:4737..5361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11163 4738..5361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11163.1021.1prot_Ecto-sp13_S_contig11163.1021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11163 2625..5361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11163.1021.1

>prot_Ecto-sp13_S_contig11163.1021.1 ID=prot_Ecto-sp13_S_contig11163.1021.1|Name=mRNA_Ecto-sp13_S_contig11163.1021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=466bp
ALDAVGKLSPVANVALAAAPLSRLPPPPSAAAATAAAVALRASFVAEILS
VPLLPSRLGVDDVKLLLKERAEAFFDCLRDFRVEMVAAAATATAGEGGGK
GRAKGAAAGASAAAGPGAEEGNRRSGGGAGGAGHWGAFHLPPPPVSCCST
EAFLLGNVVAMGTKISVEGGGGAGGGGGINAGGPMTASAARRGQREFMRA
VTSLLELRAIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQD
QVRLLVSDRWVRSASMLALDGVNEKLLQRCTEAERLENKEILESNAANLA
VASVQSQRAEANRGFVSKWAEKLLKTSKKWFSVPDQQQQPSAPAMSNAAA
AAAAPTLPPDGSSSGLINASAASRAAAMGQGHQQSKSGGPAGGGGGGGGG
AATLRGAVSGGGGGGGRGGVVDPADRPHAYDADSVLALSELLGVLLRRWG
TGANASNQVMQARCWV
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mRNA from alignment at Ecto-sp13_S_contig11163:2625..5361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11163.1021.1 ID=mRNA_Ecto-sp13_S_contig11163.1021.1|Name=mRNA_Ecto-sp13_S_contig11163.1021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11163:2625..5361- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTCGACGCGGTTGGAAAGCTTTCTCCTGTCGCCAACGTCGCTCTCGC
CGCTGCACCTCTCTCTCGACTACCACCGCCGCCGTCAGCTGCCGCCGCCA
CCGCCGCCGCGGTTGCGCTCCGCGCGTCATTCGTGGCGGAAATCCTGTCG
GTACCGCTCCTGCCGTCCAGGCTAGGCGTCGACGATGTCAAACTCTTGCT
CAAGGAGCGGGCGGAGGCGTTCTTCGACTGCCTCAGAGACTTTCGAGTGG
AGATGGTGGCCGCCGCCGCCACCGCCACCGCCGGCGAGGGCGGGGGAAAA
GGCAGAGCGAAAGGTGCCGCCGCTGGTGCATCGGCAGCGGCCGGTCCTGG
TGCTGAGGAGGGGAATAGGAGGAGTGGGGGTGGCGCCGGCGGCGCTGGCC
ACTGGGGGGCGTTTCATCTCCCTCCCCCGCCCGTGTCTTGCTGCTCGACG
GAGGCATTTCTCCTCGGCAACGTCGTGGCGATGGGAACTAAGATCTCGGT
GGAAGGTGGCGGCGGGGCTGGGGGAGGGGGCGGAATCAATGCCGGCGGAC
CGATGACGGCCTCCGCAGCGCGACGAGGGCAGCGGGAGTTCATGCGGGCG
GTGACCAGCTTGCTGGAGCTTCGGGTGAGAGGATACACATGCCGGGCCGG
GGGGGGGGGGTGGGGGGGGGGGTACTCATATTCGTGCGTGCCGTAGTCGT
TAGACCATTGACCTCGCATCCCTGCCGGGACGGAGCACGCCAGGTTCTCA
CCGGACCAGGCTCTCACATCACCAAGCGCGAAGCACCGTGAGGTATTCAG
CGAGTCGCAAGAAGGGTGCGCTGCATCCTGCTTCGGGTGTTCTGCATCAT
GTGCTTACTTACTTCCGTACGGATAACAGATTCATATGACTTCATTTCTG
GTGCTTTCACTTCCAGAGACAGTTAAAAGCACTGTGTAACTGCCTCGGCG
GGTACTTGACCAATGTAACACAACGTGGTGCGATCATCCCCTTTGCGCGG
AGTGAGGGTTCTCGACCCTGCACAACATAATCTACTCGACCACCATTATG
GTTACCGCAAGAAAAAAAAAAGGCAAGAAAGAAGCGAAAACCTGGTTGCC
GGGCTCACATAGTGATGGGCTTGTTTTACAACGTCGTTGCCAAGCGACGA
AAACCCATTGCTCAGAGGTGCATGCCGTAGTCGGGGGGAAGAAGGGGGGT
GTGGAATTGCCACGTATCTCACCGTAGCGGATGGTACTAAATAGCATCTT
TACAACGAGCGTGTCGCTGGTGTGTGTTTTGGTACTGCAGTGGGCGTGAA
ACCGTTGCCTCGTTTTATCCGAACGCATTCCGCCCCCTAGGCTTCCTTCA
GCGTCCCACGTTTCTCTATCCCCTTTCGTCCCCCGCGCATACCACAGGCG
ATACCCGAGAGTCTGCTCACGGACAGACAGGCCATCACCTGGCAGAGTCA
GGACGGAGCGTCTGGGGGCGGCAGCGGTGGGACTTCGATGACAGCGCTTG
CCGTGCCACAGGCGGTTCAGGACCAGGTATGTCGTGGTGAACGACAAGGA
GCGAACGACAAGCGTCAACTCAACAACTTTTTTGTTCGTTTTGCCGCTCC
ATGTCTGCTTGCTGATTTTCAAGCCGACGTGCACGACGAGACGGTAGAGA
CAAAAACGAAAATGTTGCTGCCGGCGCGGAGTGGATAGGCTGCGACCGCG
CCAAGCAAGAAGAACGGACACTTGAAGAAACACACGGAAGACGGAAATGC
GCTGACATCGTTCGCTACGTGTCCCCCCCGACCCCCTCGTCTTGCTGACG
CTGTTGTCTACCACCACCACCTTGCCGCCGCGACCATCAACCCCTCGCGC
GGGCATATTATCACAGGTGCGGCTGCTGGTGTCCGACCGCTGGGTGAGGT
CGGCGAGCATGCTGGCCCTGGACGGGGTGAACGAGAAATTGCTCCAGAGG
TGCACCGAGGCCGAGCGCCTCGAGAACAAGGAGATCCTGGAGTCTAACGC
CGCAAACCTGGCCGTGGCCAGTGTCCAAAGTCAAAGGGCAGAGGTGGGTG
GGTTCACGGGGGGTCGCTGTTGCTGTTGTTGTTGTCTCACGCGGAGGAGC
AAGAGGTGTTTGTTGTGTTGTCATTCCTCATGTTTCAACGTTGAGTCGGT
ATATCCTTGCGCTTCTTCGAAGCACGATACTTATTTTTACCTCGATCCGG
CTTCACACACACACCTTGGGTCCCCCGTATCCACCCCACCTCCCGTATGG
TCGCTCTCTCGGCCCCCAGGCCAACCGAGGGTTCGTCTCCAAGTGGGCCG
AGAAACTCCTCAAGACTAGCAAGAAGTGGTTCAGCGTCCCCGATCAGCAG
CAACAACCGTCTGCTCCCGCCATGAGCAACGCCGCCGCCGCCGCGGCTGC
TCCCACCCTCCCTCCTGACGGCTCCAGCAGCGGCCTAATCAACGCCAGCG
CTGCCTCTCGGGCAGCGGCAATGGGGCAGGGGCACCAGCAGTCGAAGAGC
GGCGGCCCCGCGGGAGGAGGAGGAGGAGGAGGCGGGGGGGCAGCAACATT
GCGGGGCGCCGTGAGCGGCGGCGGTGGTGGAGGAGGGCGGGGAGGCGTTG
TCGACCCCGCTGACAGGCCTCACGCGTACGATGCGGATAGCGTTTTGGCG
CTGTCGGAGCTGCTGGGGGTGCTCCTTCGAAGATGGGGGACGGGCGCGAA
CGCTTCGAACCAAGTCATGCAGGCGCGTTGTTGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11163:2625..5361-

>mRNA_Ecto-sp13_S_contig11163.1021.1 ID=mRNA_Ecto-sp13_S_contig11163.1021.1|Name=mRNA_Ecto-sp13_S_contig11163.1021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11163:2625..5361- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTCGACGCGGTTGGAAAGCTTTCTCCTGTCGCCAACGTCGCTCTCGC
CGCTGCACCTCTCTCTCGACTACCACCGCCGCCGTCAGCTGCCGCCGCCA
CCGCCGCCGCGGTTGCGCTCCGCGCGTCATTCGTGGCGGAAATCCTGTCG
GTACCGCTCCTGCCGTCCAGGCTAGGCGTCGACGATGTCAAACTCTTGCT
CAAGGAGCGGGCGGAGGCGTTCTTCGACTGCCTCAGAGACTTTCGAGTGG
AGATGGTGGCCGCCGCCGCCACCGCCACCGCCGGCGAGGGCGGGGGAAAA
GGCAGAGCGAAAGGTGCCGCCGCTGGTGCATCGGCAGCGGCCGGTCCTGG
TGCTGAGGAGGGGAATAGGAGGAGTGGGGGTGGCGCCGGCGGCGCTGGCC
ACTGGGGGGCGTTTCATCTCCCTCCCCCGCCCGTGTCTTGCTGCTCGACG
GAGGCATTTCTCCTCGGCAACGTCGTGGCGATGGGAACTAAGATCTCGGT
GGAAGGTGGCGGCGGGGCTGGGGGAGGGGGCGGAATCAATGCCGGCGGAC
CGATGACGGCCTCCGCAGCGCGACGAGGGCAGCGGGAGTTCATGCGGGCG
GTGACCAGCTTGCTGGAGCTTCGGGCGATACCCGAGAGTCTGCTCACGGA
CAGACAGGCCATCACCTGGCAGAGTCAGGACGGAGCGTCTGGGGGCGGCA
GCGGTGGGACTTCGATGACAGCGCTTGCCGTGCCACAGGCGGTTCAGGAC
CAGGTGCGGCTGCTGGTGTCCGACCGCTGGGTGAGGTCGGCGAGCATGCT
GGCCCTGGACGGGGTGAACGAGAAATTGCTCCAGAGGTGCACCGAGGCCG
AGCGCCTCGAGAACAAGGAGATCCTGGAGTCTAACGCCGCAAACCTGGCC
GTGGCCAGTGTCCAAAGTCAAAGGGCAGAGGCCAACCGAGGGTTCGTCTC
CAAGTGGGCCGAGAAACTCCTCAAGACTAGCAAGAAGTGGTTCAGCGTCC
CCGATCAGCAGCAACAACCGTCTGCTCCCGCCATGAGCAACGCCGCCGCC
GCCGCGGCTGCTCCCACCCTCCCTCCTGACGGCTCCAGCAGCGGCCTAAT
CAACGCCAGCGCTGCCTCTCGGGCAGCGGCAATGGGGCAGGGGCACCAGC
AGTCGAAGAGCGGCGGCCCCGCGGGAGGAGGAGGAGGAGGAGGCGGGGGG
GCAGCAACATTGCGGGGCGCCGTGAGCGGCGGCGGTGGTGGAGGAGGGCG
GGGAGGCGTTGTCGACCCCGCTGACAGGCCTCACGCGTACGATGCGGATA
GCGTTTTGGCGCTGTCGGAGCTGCTGGGGGTGCTCCTTCGAAGATGGGGG
ACGGGCGCGAACGCTTCGAACCAAGTCATGCAGGCGCGTTGTTGGGTG
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