mRNA_Ecto-sp13_S_contig1116.1016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1116.1016.1
Unique NamemRNA_Ecto-sp13_S_contig1116.1016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1116.1016.1 vs. uniprot
Match: D8LG05_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG05_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.670e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  160 MMSGDFGEEDSFGARAMQERTHAELQEMVSSHNILAFIKAS 282
            MMS DFGEEDSFGARAMQERTHAELQEMVSSHNILAFIK +
Sbjct:    1 MMSEDFGEEDSFGARAMQERTHAELQEMVSSHNILAFIKGN 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1116.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG05_ECTSI1.670e-1592.68Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1116contigEcto-sp13_S_contig1116:4768..5058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.8
Seed ortholog evalue3.1e-12
Seed eggNOG ortholog2880.D8LG05
Preferred nameGRX3
Model size292
KEGG koko:K07390
Hectar predicted targeting categorysignal peptide
GOsGO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252
Exons1
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0278@1,KOG0911@2759
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-21_005080.1
Cds size291
COG Functional cat.O
BiGG ReactioniMM904.YER174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462580.3859775-CDS-Ecto-sp13_S_contig1116:4767..50581681462580.3859775-CDS-Ecto-sp13_S_contig1116:4767..5058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1116 4768..5058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1116.1016.1prot_Ecto-sp13_S_contig1116.1016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1116 4768..5058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1116.1016.1

>prot_Ecto-sp13_S_contig1116.1016.1 ID=prot_Ecto-sp13_S_contig1116.1016.1|Name=mRNA_Ecto-sp13_S_contig1116.1016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MVMFPNYAVLFLVWNVLTTARVLGFVLRPPVGFGHLDRSSAQARHVTSAT
RLGMMSGDFGEEDSFGARAMQERTHAELQEMVSSHNILAFIKASLRQ
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mRNA from alignment at Ecto-sp13_S_contig1116:4768..5058-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1116.1016.1 ID=mRNA_Ecto-sp13_S_contig1116.1016.1|Name=mRNA_Ecto-sp13_S_contig1116.1016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1116:4768..5058- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATGTTCCCTAACTATGCAGTCCTGTTCCTGGTTTGGAACGTGCT
TACGACGGCGAGAGTACTCGGCTTCGTGCTCCGTCCTCCCGTGGGGTTTG
GACATCTCGATCGATCCTCAGCTCAAGCGAGACATGTTACCAGTGCAACC
AGACTGGGGATGATGTCCGGGGATTTTGGCGAGGAAGATAGTTTCGGGGC
GAGGGCTATGCAGGAGAGAACCCACGCGGAGCTGCAGGAGATGGTATCTT
CGCACAACATCTTGGCTTTTATCAAGGCAAGCTTGCGCCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1116:4768..5058-

>mRNA_Ecto-sp13_S_contig1116.1016.1 ID=mRNA_Ecto-sp13_S_contig1116.1016.1|Name=mRNA_Ecto-sp13_S_contig1116.1016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1116:4768..5058- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATGTTCCCTAACTATGCAGTCCTGTTCCTGGTTTGGAACGTGCT
TACGACGGCGAGAGTACTCGGCTTCGTGCTCCGTCCTCCCGTGGGGTTTG
GACATCTCGATCGATCCTCAGCTCAAGCGAGACATGTTACCAGTGCAACC
AGACTGGGGATGATGTCCGGGGATTTTGGCGAGGAAGATAGTTTCGGGGC
GAGGGCTATGCAGGAGAGAACCCACGCGGAGCTGCAGGAGATGGTATCTT
CGCACAACATCTTGGCTTTTATCAAGGCAAGCTTGCGCCAA
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