mRNA_Ecto-sp13_S_contig11148.1002.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11148.1002.1
Unique NamemRNA_Ecto-sp13_S_contig11148.1002.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.310e-77
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 1
Query:    1 QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQGFIKAFELQRLPCYSSNRT 369
            QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELL KFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETP EYSSGSLL HAQGFIKAFELQRLP YSSNRT
Sbjct:  192 QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLTKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPPEYSSGSLLLHAQGFIKAFELQRLPSYSSNRT 314          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 5.130e-74
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    1 QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQGFIKAFELQRLPCYSSNRTG 372
            QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELL KFEDYVDEHNV+NGG+VVGYDGFHANASVRDLLNSLCKELLGAETP EYSSGSLL HAQGFIKAFELQRLP YSSNRTG
Sbjct:  883 QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLTKFEDYVDEHNVSNGGSVVGYDGFHANASVRDLLNSLCKELLGAETPPEYSSGSLLLHAQGFIKAFELQRLPSYSSNRTG 1006          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: S2JJN8_MUCC1 (Origin recognition complex subunit 2 n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JJN8_MUCC1)

HSP 1 Score: 62.0 bits (149), Expect = 1.080e-8
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   13 RDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQ 312
            +D +D  S   ++ FP+W  EL  G++L+FYG GSKR LLN+F        +T+G  +V  +GF  + S++D+L  +    LG       S+GS+  H Q
Sbjct:  273 QDEIDILSEMHKQHFPQWFFELHSGFNLVFYGYGSKRNLLNEFAQTA----LTDGPLIV-VNGFFPSISIKDILLKITAGALGTTV----STGSIQDHVQ 363          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: C5FHS5_ARTOC (Origin recognition complex subunit 2 n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FHS5_ARTOC)

HSP 1 Score: 60.8 bits (146), Expect = 2.730e-8
Identity = 27/89 (30.34%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAE 267
            +DP+++  D      E+ FP+W  E+  G+++  YG GSKR+L+ ++ D++ EHN      +V  +G+  N ++R +L ++   +LG +
Sbjct:  260 KDPLQEEKDYLLELHERSFPQWNFEMTEGFNVCIYGYGSKRKLVQRYADWLYEHN-DQPPLIVIVNGYTPNITIRSVLATVATAILGPD 347          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: I1CDD5_RHIO9 (Origin recognition complex subunit 2 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CDD5_RHIO9)

HSP 1 Score: 60.5 bits (145), Expect = 3.540e-8
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   46 EKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETP 273
            ++ FP+W  EL  G++L+FYG GSKR LLN+F   V    +TNG  +V  +GF  + S++D+L  +    LG + P
Sbjct:  269 KQHFPQWYFELQSGFNLVFYGYGSKRNLLNEFAQTV----LTNGPLIV-INGFFPSISIKDILVKITAGALGTQAP 339          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: A0A8H7RAP9_9FUNG (Origin recognition complex subunit 2 n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7RAP9_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 3.730e-8
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   13 RDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQGFIKAF 330
            +D +   S   ++ FP+W  EL  G++L+FYG GSKR LLN+F        +T+G  +V  +GF  + S++D+L  +    LG   P    +GS+  H Q     F
Sbjct:  274 KDEIAILSEMHKQHFPQWFFELQSGFNLVFYGYGSKRNLLNEFAQTA----LTDGPMIV-VNGFFPSISIKDILLKITAGALGTTGP----TGSIQDHVQFICNYF 370          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: A0A0B7N551_9FUNG (Origin recognition complex subunit 2 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N551_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 6.930e-8
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   13 RDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQ 312
            R+ +   S    + FP+W  EL  G++L+FYG GSKR LLN+F        +T+G  +V  +GF    S++D+L  +    LG+  P    SGS+  H Q
Sbjct:  272 RNEIALLSEMHTQHFPQWFFELQSGFNLLFYGYGSKRNLLNEFAKTA----LTDGPMIV-VNGFFPTISIKDILLKITAGALGSAGP----SGSIQDHVQ 362          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: A0A1B7N7Y7_9AGAM (Origin recognition complex subunit 2 n=2 Tax=Rhizopogon TaxID=5375 RepID=A0A1B7N7Y7_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 8.920e-8
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   55 FPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCK 249
            F RW  ELD G++L+FYG+GSKR +LN F  +V +      G V   + FH + +VRD+L S+ +
Sbjct:   90 FKRWARELDEGFNLLFYGLGSKRSILNDFAKHVSKR-----GHVTVVNAFHPSVTVRDMLVSIAR 149          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: UPI001B866944 (origin recognition complex subunit 2 n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B866944)

HSP 1 Score: 59.3 bits (142), Expect = 8.920e-8
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   55 FPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCK 249
            F RW  ELD G++L+FYG+GSKR +LN F  +V        G V   + FH + +VRD+L S+ +
Sbjct:   91 FKRWARELDEGFNLLFYGLGSKRSILNDFAKHVSRR-----GHVAVVNAFHPSVTVRDMLASIAR 150          
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Match: UPI0006C96219 (origin recognition complex subunit 2 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C96219)

HSP 1 Score: 58.9 bits (141), Expect = 1.260e-7
Identity = 33/121 (27.27%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   13 RDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDYVDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLLHHAQGFIKAFELQRLPCYSSNRTGG 375
            +DI++A    A+K +P W   ++ G++++ YG+GSKR L+N+F   +     T     +  +GF  N +++++L+++  ELLG +T  + + G      +  +K     R+     N  GG
Sbjct:  200 QDIINALYDCAQKYYPEWFRLMEEGFTVLLYGLGSKRLLINQFHKEMISDEPT-----LIINGFFPNLTIKEILDNIIVELLGKQT--DTNQGECFEIIEKTMKRHSSDRIYLLIHNLDGG 313          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11148.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P6_ECTSI1.310e-7796.75Origin recognition complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5LEG7_9PHAE5.130e-7495.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
S2JJN8_MUCC11.080e-836.00Origin recognition complex subunit 2 n=1 Tax=Mucor... [more]
C5FHS5_ARTOC2.730e-830.34Origin recognition complex subunit 2 n=1 Tax=Arthr... [more]
I1CDD5_RHIO93.540e-840.79Origin recognition complex subunit 2 n=1 Tax=Rhizo... [more]
A0A8H7RAP9_9FUNG3.730e-833.96Origin recognition complex subunit 2 n=1 Tax=Mucor... [more]
A0A0B7N551_9FUNG6.930e-836.00Origin recognition complex subunit 2 n=1 Tax=Paras... [more]
A0A1B7N7Y7_9AGAM8.920e-843.08Origin recognition complex subunit 2 n=2 Tax=Rhizo... [more]
UPI001B8669448.920e-843.08origin recognition complex subunit 2 n=1 Tax=Suill... [more]
UPI0006C962191.260e-727.27origin recognition complex subunit 2 n=1 Tax=Trich... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11148contigEcto-sp13_S_contig11148:1266..2591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score246.5
Seed ortholog evalue6.5e-63
Seed eggNOG ortholog2880.D7G3P6
Model size377
KEGG koko:K02604,ko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.DNA replication origin binding
EggNOG OGsCOG5575@1,KOG2928@2759
Cds size375
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462579.4758697-CDS-Ecto-sp13_S_contig11148:1267..13901681462579.4758697-CDS-Ecto-sp13_S_contig11148:1267..1390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11148 1268..1390 -
1681462579.4886498-CDS-Ecto-sp13_S_contig11148:1944..20701681462579.4886498-CDS-Ecto-sp13_S_contig11148:1944..2070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11148 1945..2070 -
1681462579.4999459-CDS-Ecto-sp13_S_contig11148:2465..25911681462579.4999459-CDS-Ecto-sp13_S_contig11148:2465..2591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11148 2466..2591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11148.1002.1prot_Ecto-sp13_S_contig11148.1002.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11148 1268..2591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11148.1002.1

>prot_Ecto-sp13_S_contig11148.1002.1 ID=prot_Ecto-sp13_S_contig11148.1002.1|Name=mRNA_Ecto-sp13_S_contig11148.1002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
QDPVRDIVDAASSKAEKKFPRWKSELDWGWSLMFYGVGSKRELLNKFEDY
VDEHNVTNGGAVVGYDGFHANASVRDLLNSLCKELLGAETPQEYSSGSLL
HHAQGFIKAFELQRLPCYSSNRTGG
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mRNA from alignment at Ecto-sp13_S_contig11148:1266..2591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11148.1002.1 ID=mRNA_Ecto-sp13_S_contig11148.1002.1|Name=mRNA_Ecto-sp13_S_contig11148.1002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11148:1266..2591- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCCCGTACGCGACATCGTGGACGCCGCTTCTTCGAAAGCCGAAAA GAAGTTCCCCCGGTGGAAGAGCGAGCTAGACTGGGGGTGGAGCCTCATGT TCTATGGGGTCGGCAGCAAGCGGGAGGTTGGTGCATTTGCTGCCGGTGCT GCTGCCATTGCTGCTGCTGCTTCTGCTGCTGCTGTTGCTGCTTTTGCTGC TTCTGCTGCTGCTGCTGCTGCTGCTGTTGGTGGTGCTGCTATTGATGCTT CTGCCATTGCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGCT TTCGTTGCTGTTGGTGGTGGTGGTGCTGCTGCTGCTGTTGGTGGTGGTGG TGCTGCTGCTGCTGTTGGCTTAGCGTGCTTTCGTCCACCGCTCAGTTTGT TTTTATTTCCGTGTGTACATACAAAGGTCGTTGCGTTGTTTGCCACTGCT GTATGGTGTCTCCGGTATGGCGTGCGACTGACTGTGTGCTGAACACCGCC CCAACGTGCATCTACGCACAGCTGTTGAACAAGTTCGAAGACTACGTCGA CGAGCACAACGTAACCAACGGGGGAGCGGTGGTGGGCTACGACGGTTTCC ACGCCAACGCCTCCGTTAGAGACCTCCTCAACAGCCTCTGCAAGGAGGTG CGTGCGGTGTTGTAACGACTTGGACGACGTTTACAAACGATGTGTTTTTT TGTCCTCGTGTGGGCGCGTTTCAGCTGTTCCACATCTGCGACGCAGTTTG TTTAGTGTCCACTTGTCTACCCCTAAATGGTGTTGACTGTTTTATGTGTT GCTGTTCTTGCAGCTCGTTTTCGTTGACAAACGCATCGAACAGACGAAAG TGGTGCAAGGAAACGGTTTTTTTCATATGCCTGCCAAGGACGCCCACAAA AAAAAAATGATGAAAGGATGCACGATTGTGGCACATAACACAAGATCTCC CGAAATGGAATCATGATACGTCCCATACCTTCTCCTCTGCCACTTAAAAT TTGAACCTGTCAAAACCGGTTCCCGATCTGATACACATCGATCGAATCGA AGCGTACATTTCTCGATGCACATGCCCCATGGTCAGGTCGACACTGATCT CCCCCCGCTCCCCCCTTCCCTCTGTTTTTTTCTGCTACGCTCTAAATTAC CACAACAATGCCGGCCCTCATCGCCCGCCAACATCACCGCTAACGCTGAA GCTGCTGGGCGCCGAGACCCCGCAGGAGTACTCTAGCGGGAGCCTCCTCC ACCACGCACAGGGGTTTATAAAGGCGTTCGAACTCCAGCGGTTGCCCTGC TATTCCTCCAACCGCACCGGCGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11148:1266..2591-

>mRNA_Ecto-sp13_S_contig11148.1002.1 ID=mRNA_Ecto-sp13_S_contig11148.1002.1|Name=mRNA_Ecto-sp13_S_contig11148.1002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11148:1266..2591- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCCCGTACGCGACATCGTGGACGCCGCTTCTTCGAAAGCCGAAAA
GAAGTTCCCCCGGTGGAAGAGCGAGCTAGACTGGGGGTGGAGCCTCATGT
TCTATGGGGTCGGCAGCAAGCGGGAGCTGTTGAACAAGTTCGAAGACTAC
GTCGACGAGCACAACGTAACCAACGGGGGAGCGGTGGTGGGCTACGACGG
TTTCCACGCCAACGCCTCCGTTAGAGACCTCCTCAACAGCCTCTGCAAGG
AGCTGCTGGGCGCCGAGACCCCGCAGGAGTACTCTAGCGGGAGCCTCCTC
CACCACGCACAGGGGTTTATAAAGGCGTTCGAACTCCAGCGGTTGCCCTG
CTATTCCTCCAACCGCACCGGCGGC
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