mRNA_Ecto-sp13_S_contig11147.1001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11147.1001.1
Unique NamemRNA_Ecto-sp13_S_contig11147.1001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 1087 bits (2811), Expect = 0.000e+0
Identity = 638/695 (91.80%), Postives = 643/695 (92.52%), Query Frame = 1 
Query:    1 QLKRFSGPASAGLVMSHHLKSVHASVRRXXXXXXXXXXXXXXXXX--SDGVEQLFSSRLRGVNSPAAGRMLGVGGRMKRRDAVANTDWRKSSLNVYIRGFPAPRGCYKLSVCTSSWRDERRXXXXXXXXXXXXXXXXXXXXXWAEGERSRRRMEEVEDLWVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASLMHRSITVDGQRRAQETPAVRGRLFIGQASCAPSHPNFFDSSVLTGLPFHIDGPFFVSRRGGKASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAKGAKRPFSIMLPGQMYLQLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDLGRVVDFFGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------DTELLLELLEFCLSDCRPPEGERPSGVPAGRAGVEAEEGAVAAAAGGGQEELDAEAVARSEAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEVSLLDVASVPGL 2061
            +LKRFSGPASAGLVMSHHLKSVHASVRRXXXXXXXXXXXXXXXXX  SDGVEQLFSSRLRGVNSPAAGRMLGVGGRMKRR AV+NTDWRKSSLNVYIRGFPAPRGCYKLSVCTSSWRDERR XXXXXXXXXXXXXXXXX   WAEGERSRRRMEEVED+WVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASL+HRSITVDGQRRAQETPAVRGR+FIGQ           DSSVLTGLPFHIDGPFFVSRRGGKASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAK AKRPFSIMLPGQMYLQLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDLGRVVDFFG    XXXXXXXXXXXXXXXXXXXXXXXXXXXX         DTELLLELLEFCLSDCRPPEGERPSGVPAGRAGVEAE               DAEAVARSEAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKL DRFVHLKATRRLARFFERDDFLEMMGIVRFSP LLAENLDQVLPRTWRGEKFVGWGGGSA  QSG PKASWLALFWTEVSLLDVASVPGL
Sbjct:  509 ELKRFSGPASAGLVMSHHLKSVHASVRRXXXXXXXXXXXXXXXXXXXSDGVEQLFSSRLRGVNSPAAGRMLGVGGRMKRRGAVSNTDWRKSSLNVYIRGFPAPRGCYKLSVCTSSWRDERRDXXXXXXXXXXXXXXXXX---WAEGERSRRRMEEVEDMWVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASLVHRSITVDGQRRAQETPAVRGRIFIGQ-----------DSSVLTGLPFHIDGPFFVSRRGGKASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAKRAKRPFSIMLPGQMYLQLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDLGRVVDFFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVGPAPPPDTELLLELLEFCLSDCRPPEGERPSGVPAGRAGVEAE-AXXXXXXXXXXXXXDAEAVARSEAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLADRFVHLKATRRLARFFERDDFLEMMGIVRFSPTLLAENLDQVLPRTWRGEKFVGWGGGSAAGQSGAPKASWLALFWTEVSLLDVASVPGL 1188
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BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 1069 bits (2765), Expect = 0.000e+0
Identity = 627/697 (89.96%), Postives = 636/697 (91.25%), Query Frame = 1 
Query:    1 QLKRFSGPASAGLVMSHHLKSVHASVRRXXXXXXXXXXXXXXXXX-SDGVEQLFSSRLRGVNSPAAGRMLGVGGRMKRRDAVANTDWRKSSLNVYIRGFPAPRGCYKLSVCTSSWRDERRXXXXXXXXXXXXXXXXXXXXXWAEGERSRRRMEEVEDLWVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASLMHRSITVDGQRRAQETPAVRGRLFIGQASCAPSHPNFFDSSVLTGLPFHIDGPFFVSRRGGKASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAKGAKRPFSIMLPGQMYLQLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDLGRVVDFFGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------DTELLLELLEFCLSDCRPPEGERPSGVPAGRAGVEAEEGAVAAAAGG---GQEELDAEAVARSEAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEVSLLDVASVPGL 2061
            +LKRFSG ASAGLVMSHHL SVHASVRR    XXXXXXXXXXXXX SDGVEQLFSSRLR VNSPAAGRMLGV GRMKRR AVANTDWRKS +NVYI GFPAPRGCYKL VCTSSWRDERRXXXXXXXXXXXXXXXX     W EGERSRRRMEEVED+WVLSYVLAPPEARKLALSAEFEG+GLTPLMTCASL+HRSITVDGQRRAQETPAVRGRLFIGQ           DSSVLTGLPFHIDGPFF+SRRGGKASFVMDSLEDNRAS PPRAPRVAHG WNKELFGS+CTELVPEHMVDLKDELSGRDAGLLY FWPSAK AKRPFSIMLPGQMYL+LGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDL RVVDFFGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      DTELLLELLEFCLSDCRPPEGERPSGVPAGRAG E               GQEELDAEAVARSEAHAAR ALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPT FALAGRKRFVVGTRRQQGLLPKLT+RFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSA AQSG PKASWLALFWTEVSLLDVASVPGL
Sbjct: 2465 ELKRFSGSASAGLVMSHHLTSVHASVRRRWAGXXXXXXXXXXXXXXSDGVEQLFSSRLRRVNSPAAGRMLGVSGRMKRRSAVANTDWRKSGINVYILGFPAPRGCYKLRVCTSSWRDERRXXXXXXXXXXXXXXXXRG---WTEGERSRRRMEEVEDMWVLSYVLAPPEARKLALSAEFEGQGLTPLMTCASLVHRSITVDGQRRAQETPAVRGRLFIGQ-----------DSSVLTGLPFHIDGPFFLSRRGGKASFVMDSLEDNRASPPPRAPRVAHGTWNKELFGSLCTELVPEHMVDLKDELSGRDAGLLYHFWPSAKRAKRPFSIMLPGQMYLRLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVTVKKITPASVREFLRRSNGVSSQGDLARVVDFFGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTELLLELLEFCLSDCRPPEGERPSGVPAGRAGAEXXXXXXXXXXXXXEVGQEELDAEAVARSEAHAARLALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTTFALAGRKRFVVGTRRQQGLLPKLTNRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAAAQSGAPKASWLALFWTEVSLLDVASVPGL 3147
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BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.190e-31
Identity = 97/271 (35.79%), Postives = 137/271 (50.55%), Query Frame = 1 
Query:  472 WVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASLMHRSIT-VDGQRRAQETPAVRGRLFIGQASCAPSHPNFFDSSVLTGLPFHIDGPFFVSRRGG----KASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAKGAKRPFSIMLPGQMYLQLGDLPLYLSRSASEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDL-----ARQPTVT----VKKITPASVREFLR 1242
            W+++ V+APP  R  A     E     PL++CA+L+  SI    GQR A       GRLF+             D++V TGLPFH+DGPFFV+ RG     + + V+   +D      P    +   +WN  LF S+C+E VP  M  L   L    A  LYR WP     ++PF  ++P +++ +L   PLYLS S   G   RM +G  KT+ +SP +E ++ R   L SVP  VT D      A+Q T      ++++TPA VR  LR
Sbjct: 3982 WLVASVMAPPALRDPAQDYFSELSRAAPLLSCAALL--SIEGAGGQRGAGGAGLSCGRLFVRH-----------DTTVRTGLPFHVDGPFFVTDRGRGGLKRRALVLSPHDD------PALSDLRCQEWNTRLFQSLCSEAVPYFMEQLAATLRVGGAAQLYRNWPLVSRLRQPFQNLVPAELHQKLAVAPLYLSTS---GSLVRMSEGLLKTRPLSPAIEAFLGRQFALLSVPSLVTRDFLARYNAQQRTSATAPMLRELTPAGVRSMLR 4230
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BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A7S3XNM4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNM4_HETAK)

HSP 1 Score: 105 bits (263), Expect = 2.040e-22
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 1 
Query: 1651 WKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEVSLLDVASV 2052
            W EL G  L+PL +G  G F  +        +++ T  QQ LLP L  RFV L A R+   FFE   F+  MG   FSP++LA N++++LPR WR E+FV W        + GP   WL  FW EVSLLD  +V
Sbjct:   18 WTELHGAALVPLEDGGVGLFSRS------SPYILATAHQQSLLPGLKHRFVSLAAQRKFKDFFEDSSFVSTMGFAVFSPSVLANNMNEILPRAWRNEQFVKW---DPENGTEGPSRVWLYKFWQEVSLLDAHAV 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A7S2VVU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-11
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 1 
Query: 1648 VWKELQGVPLLPLAN---GTAGSFPTAFALAG--RKRFVVGTRRQQGLLPKLTDRFVHLKATRRLAR--FFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWG-------GGSAPAQSGGPKASWLALFWTEVSLLD 2040
            +WKE+ G+PL+P+ +   GT G    A    G  +K  V+  + QQ LLP + D F+  +  + +    +F+   F+  M I RF   +LA  +  +LP+ W G+ FV W        GG       GP   WL +FW+ V + D
Sbjct: 3177 IWKEMVGLPLIPMVDETFGTIGGGGIAIGAVGVGKKLAVIANKEQQLLLPNMRDCFIEDRFVKMVGEKGWFDNGKFMLAMNITRFDSKVLASYVSSLLPKEWEGKDFVSWSDDNWGGVGGVQIDNVRGPNGLWLKIFWSHVQIYD 3321
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A484EHX4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHX4_BRELC)

HSP 1 Score: 76.3 bits (186), Expect = 1.920e-10
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1 
Query: 1645 VVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEV 2028
            ++W E  G+PLLPL +G+ G      A   R  +++G+  Q  LL  + + FV L   RRL ++F    F+ + G+  FS  +LA+N+++VLP +W+ ++ V W     P    G    WL  FW  V
Sbjct: 3542 LIWAEFHGLPLLPLEDGSIGVLQ---ANQRRMSYIIGSYDQIELLEPVKNLFVSLLTLRRLHKYFSETRFISIFGLTSFSIKILADNIERVLPSSWKYQETVEWD----PNSPVGIDQLWLYRFWQVV 3662
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.780e-10
Identity = 56/171 (32.75%), Postives = 79/171 (46.20%), Query Frame = 1 
Query: 1621 QSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRF-VVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGW------GGGSAPA--------------------QSGGPKASWLALFWTEVSLLDVASV 2052
            QS   +   +W+EL+GVPLLPL +G+       F  +G  R  V+ TR Q  LLP     +V   A  R  + F+  DF  +MGI  F  ++LAE +  VLP  W+ + FV W      G  +A A                    ++  P A W+  FW EV+L D  +V
Sbjct:   41 QSLEAQATTIWRELRGVPLLPLEDGSVA----CFGASGSSRAPVLATRMQMSLLPA-PYLYVSQAAVARFPQVFQSADFRRVMGIRVFDSSVLAEYMWTVLPADWQRKPFVRWEPRDLAGTAAAAAAVPPAAETPAGEAKSEATAAEARAPTAQWIYQFWQEVNLDDAEAV 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A6A3NID5_9STRA (RING-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NID5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-8
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1 
Query: 1648 VWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEV 2028
            VW E  G+ LLPL +G+ G          R  +V+ +  Q  LL  L   FV L A+RRLA++F    F  + G+V FS   L++N+++VLP +W+ +  + W   S+P +       WL  FW  V
Sbjct:  948 VWTEFHGLSLLPLEDGSIGVLRVN---QRRTSYVLASFNQIELLRPLGHLFVSLAASRRLAKYFSDSRFTTIFGLVSFSIKTLSDNIERVLPSSWKNQAMIEWDP-SSPVEI---DELWLYRFWQVV 1067
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: A0A6A4E802_9STRA (RING-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E802_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-8
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1 
Query: 1648 VWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEV 2028
            VW E  G+ LLPL +G+ G          R  +V+ +  Q  LL  L   FV L A+RRLA++F    F  + G+V FS   L++N+++VLP +W+ +  + W   S+P +       WL  FW  V
Sbjct: 2881 VWTEFHGLSLLPLEDGSIGVLRVN---QRRTSYVLASFNQIELLRPLGHLFVSLAASRRLAKYFSDSRFTTIFGLVSFSIKTLSDNIERVLPSSWKNQAMIEWDP-SSPVEI---DELWLYRFWQVV 3000
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Match: G4YZA0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZA0_PHYSP)

HSP 1 Score: 68.9 bits (167), Expect = 3.400e-8
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1 
Query: 1648 VWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFVGWGGGSAPAQSGGPKASWLALFWTEV 2028
            VW E  G+ LLPL +G+ G          R  +V+ +  Q  LL  L   FV L A+RRLA++F    F  + G+  FS   L++N+++VLP +W+ +  V W   S+P +       WL  FW  V
Sbjct: 3468 VWTEFHGLSLLPLEDGSIGVLRVN---QRRTSYVLASFNQIELLRPLGHLFVSLAASRRLAKYFSDTRFTSVFGLTSFSIKTLSDNIERVLPSSWKSQAIVEWDP-SSPIEI---DELWLYRFWQVV 3587
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11147.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LJG4_ECTSI0.000e+091.80RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K688_9PHAE0.000e+089.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YL62_9STRA5.190e-3135.79RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XNM4_HETAK2.040e-2242.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2VVU2_9STRA1.240e-1131.72Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A484EHX4_BRELC1.920e-1033.59Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6U4DDX2_9STRA7.780e-1032.75Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6A3NID5_9STRA1.070e-834.65RING-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4E802_9STRA1.130e-834.65RING-type domain-containing protein n=6 Tax=Phytop... [more]
G4YZA0_PHYSP3.400e-834.65Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11147contigEcto-sp13_S_contig11147:140..5540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score1088.2
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LJG4
Model size2061
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
Cds size2061
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11147.1001.1prot_Ecto-sp13_S_contig11147.1001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11147 140..5540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462579.3445706-CDS-Ecto-sp13_S_contig11147:139..3671681462579.3445706-CDS-Ecto-sp13_S_contig11147:139..367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 140..367 +
1681462579.354864-CDS-Ecto-sp13_S_contig11147:585..8611681462579.354864-CDS-Ecto-sp13_S_contig11147:585..861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 586..861 +
1681462579.3632798-CDS-Ecto-sp13_S_contig11147:1256..14421681462579.3632798-CDS-Ecto-sp13_S_contig11147:1256..1442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 1257..1442 +
1681462579.3815262-CDS-Ecto-sp13_S_contig11147:2032..21411681462579.3815262-CDS-Ecto-sp13_S_contig11147:2032..2141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 2033..2141 +
1681462579.3939111-CDS-Ecto-sp13_S_contig11147:2836..30391681462579.3939111-CDS-Ecto-sp13_S_contig11147:2836..3039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 2837..3039 +
1681462579.4040835-CDS-Ecto-sp13_S_contig11147:3453..35731681462579.4040835-CDS-Ecto-sp13_S_contig11147:3453..3573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 3454..3573 +
1681462579.4306006-CDS-Ecto-sp13_S_contig11147:4002..44851681462579.4306006-CDS-Ecto-sp13_S_contig11147:4002..4485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 4003..4485 +
1681462579.4390128-CDS-Ecto-sp13_S_contig11147:4670..49251681462579.4390128-CDS-Ecto-sp13_S_contig11147:4670..4925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 4671..4925 +
1681462579.4471529-CDS-Ecto-sp13_S_contig11147:5339..55401681462579.4471529-CDS-Ecto-sp13_S_contig11147:5339..5540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11147 5340..5540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11147.1001.1

>prot_Ecto-sp13_S_contig11147.1001.1 ID=prot_Ecto-sp13_S_contig11147.1001.1|Name=mRNA_Ecto-sp13_S_contig11147.1001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=687bp
QLKRFSGPASAGLVMSHHLKSVHASVRRRRAGGGGGGGGGGGGGSSDGVE
QLFSSRLRGVNSPAAGRMLGVGGRMKRRDAVANTDWRKSSLNVYIRGFPA
PRGCYKLSVCTSSWRDERRDDDSKGNKAAAAAGGGGGGGGWAEGERSRRR
MEEVEDLWVLSYVLAPPEARKLALSAEFEGEGLTPLMTCASLMHRSITVD
GQRRAQETPAVRGRLFIGQASCAPSHPNFFDSSVLTGLPFHIDGPFFVSR
RGGKASFVMDSLEDNRASLPPRAPRVAHGKWNKELFGSVCTELVPEHMVD
LKDELSGRDAGLLYRFWPSAKGAKRPFSIMLPGQMYLQLGDLPLYLSRSA
SEGGFKRMKDGYFKTQAVSPLVEEYIRRHVNLFSVPHTVTEDLARQPTVT
VKKITPASVREFLRRSNGVSSQGDLGRVVDFFGGGVGGVGNNGGGRGAAS
ATGGGGQQRSGAGPAPPPDTELLLELLEFCLSDCRPPEGERPSGVPAGRA
GVEAEEGAVAAAAGGGQEELDAEAVARSEAHAARFALGQWQSAMDKCKVV
WKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLTDRF
VHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQVLPRTWRGEKFV
GWGGGSAPAQSGGPKASWLALFWTEVSLLDVASVPGL
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mRNA from alignment at Ecto-sp13_S_contig11147:140..5540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11147.1001.1 ID=mRNA_Ecto-sp13_S_contig11147.1001.1|Name=mRNA_Ecto-sp13_S_contig11147.1001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11147:140..5540+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGAAGCGCTTCTCAGGGCCGGCATCGGCGGGGCTAGTCATGTCCCA
CCACCTCAAGAGCGTACACGCCTCGGTACGACGGCGGCGGGCAGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTCTTCCGACGGTGTGGAG
CAACTCTTCTCGTCACGCCTCCGCGGGGTGAACTCCCCCGCTGCCGGGCG
CATGCTCGGCGTGGGCGGCCGCATGAAGGTGCGTGGTTGGTGTAAGCCGC
ATTGATAGCGCCCGAATTTATAGCTTGGGAAGGAAGCTTACTGGGCGGGG
GCTGTCACTTTTTTTTTTTATTCAAAGCGTTTGTGCCTTCCTAGGAGGAG
ATTGTTGTGGACATGAATGAAACCTACAACTTCACCCCCCCCACCCCCCG
CTTATGCTTAACATCCAACCCCCCCCCCCTGTCTATCACCGAGCAGCGGC
GCGATGCGGTCGCCAACACGGATTGGCGCAAGTCGAGCCTAAACGTGTAC
ATACGGGGATTCCCGGCGCCCCGTGGCTGCTACAAGCTCAGCGTGTGCAC
CTCGTCGTGGAGAGACGAGAGGCGAGACGACGATAGCAAGGGTAACAAGG
CAGCAGCAGCAGCAGGAGGAGGAGGAGGGGGTGGGGGGTGGGCGGAAGGG
GAGAGAAGCCGCCGTCGTATGGAGGAAGTGGAGGACCTGTGGGTGCTGTC
GTACGTGCTGGCACCTCCCGAGGTGAGTCTTTTCTTTGCTATTTGTTGGC
AAGGAATTTCGGTTTGTGGACTTGGTTGTTTTGTGCGTGTCTGACCGATA
CCAGCTGCTGGCTCGCTCTCTTCTCTCCTTTTTTTTCCTTTTTTCAACGG
TTGTGAAGGTGTTGGAAGAGGCGAGGGTTCTTATTGAAGAACTGTTTCGG
TCTGAAGTCATGTTGGTAGATGCGTTTCCTGCTTCATGGCAACTCACGTA
CGTGCGTACATCCTGTATATTCTGCCTCTGCCCCGCTCTATCCCTGCGAA
TAGGCTCTCTTCTTTCTGCCTCTCTGTCTCTGCCTCTTCTCTCCCTCTAT
GCCTCTTTTTCACCCCCTTGCTGTATTGTACCTCCCTTTGTCCCTCGCTT
TGTCCTTTCCCGTGCAGGCGAGAAAGCTCGCGCTGTCGGCGGAGTTCGAG
GGGGAGGGGCTGACGCCACTCATGACGTGCGCATCCCTCATGCACCGAAG
CATCACCGTCGACGGGCAGCGGCGTGCTCAAGAGACGCCTGCCGTCCGGG
GAAGGCTCTTCATCGGTCAGGCGAGTTGTGCCCCGAGTCACCCTAATTTT
TTTGTCTGTCTCTCTCGTCCCCTTCGCAGCTGTTGTGTGTCTCTGTTTCT
CTTCTTGTTGATCCCTCTTTTCTGCCTCTGCTCCCCCCCTCTCTGGCTCT
CTCTCCCCTCCCCTCCCTTCTTGTTCTTTCTCATCTCATCTGACGGCTCA
GATTATTTCACGCGTGCGCCCGCCACCCTCACCCATTACATATACTTGAC
GCGCATCTGCAATCTTGCTGAGGTTTCTTGCAAAGTCTACTCGTTTAGTT
TCTTTCGAAAGTAGGGTCTTCGCTAGAATATGAGGCGTTGTTATGTATAT
TTTCCCCGTCTCTCCCGATCGTGCAGTTTTTTTCAACTCCAATGTACATA
CAAAAGGTGAAACACAAGGTGGAAGACAAGGTGGACCACAAAGTGGAACA
CAAGCCTTCCGCAGCACAGGTTTCGTGGTGGAACACAACGTGGAACACAG
AGTAGAACACGGAGTAGAACACATGTCTTCCGTAGGACAGGTTTCGTCGT
GACTCTTGTTTCTCATCCACTGCCCCCCCGTCCCGTCCCGTCGTTCTTGT
ATCCGGCTTCGTGATTCTGCTTCATGTCTTGTCCTCTTGACAGGATTCTT
CCGTCCTCACTGGCCTACCGTTCCACATCGACGGGCCGTTCTTCGTGTCG
AGGAGAGGAGGCAAGGCCTCGTTTGTAATGGACAGCCTGGAAGACAACAG
AGGTACGTAACCAGAAAAATTTCGCGCTCTCTCTATTTATATTTATCATG
CCATTTGAGCAAACGTTGAGCGGCAGTGGGTTCGGGAGGGCTGCTGTTTC
TCCCTCTCGACTGCAGCACGCTTGAGGACCTGATATGTTGCCCGAGGCTA
GCTCTTATCTCCTCTGCGGGGGTAATTCGACAGACGATAAAGGTTTTAGT
GTAGGATTAGTAGCTGGGTACCTGATTTTATGGTCAACGTCTCAAGTTTC
TATCTTATGTAGTTATCTGAAAGCTCTCAACTCTCAGTTTCTTTGGTCTT
AGCACGTTCAGTAATTCTCCCAGCTTGCTGGCTTTCGTTCTCTTGGCTTT
TCCACGAGGCTAAACCAACAATGTACTGCTGCAATTCGGAAACTGCTTAC
TCCGGCGTCTCTGTGCACGAAATACCCCCATAACTGTGCCCCCGTCCGTC
CTAATTTCCCCCCGCTAGATTTCAAGAGCGCGCTAAAACTTAGCCTCCGA
TTATAAAAAGACTGGATCCCTTGTCTTCTCTGCATGCTGCTGCTTCTTTC
GAATACCCACCCGAATAAGTGAGGTTCCGTCATTTGGATAGATCAGAGCG
ATACATGTCTTGTGGTAAAGACAACAATGGCGACAGCAGCTAGATCACGT
TAGCGTGAAACTTCTGTACCTCCCTTATCGTATATTTGGTGTTGCAGCGA
GCCTGCCCCCTCGAGCCCCTCGGGTAGCCCACGGTAAGTGGAACAAGGAG
CTCTTCGGGAGCGTGTGCACGGAGCTGGTGCCGGAACACATGGTGGACCT
CAAAGACGAGCTGAGCGGCCGCGACGCCGGGCTGCTTTACCGTTTCTGGC
CCTCAGCCAAGGGCGCCAAGAGGCCGTTCTCGATCATGCTCCCTGGTCAG
GTAAGAAGGGGAGTCGTGGGAGAAAGGGGGGGGGGGCAAGAGGCTATCAT
GCTCCCGGTCAGGCACGAAGGGGAGTGGTTCGAGAGGGGGGGGAGGGGTG
GGAGCAAGAGAGTGTTGTCGATCGTGCTCCCAGGCTAGCTGAGAAGGGGA
ATAGTTTGAGGGAGACCGGGCAAGTGTTACACAGTGTCTCGGGTTTCCGC
CGAAGTAAGGCACTCGACCTCTTTCTTCTTCCGCTACTGCTGTAATGTAT
GTAGTATGAAACATTATCCTTGGGTATTGGACGCTTTGCTTTGGGTGCAC
ACGCGACGGGAGCACCCAACGTCGCCTTCCTAAGAGCCTGTAATTGATGT
CATGAACCTTGCGCCGTTGTTACCCTCTGACGACATGGAATCGAACCGGA
TGTGTTTCGATCAGATGTACCTTCAACTGGGAGATCTGCCTCTGTACCTT
AGCCGTAGCGCCTCAGAGGGTGGCTTCAAGCGCATGAAGGACGGCTACTT
CAAGACCCAGGCCGTCAGCCCGTTGGTAGAAGAGGTGAGCGTTTGGTTGG
CACACAAGCAGGCGCATGGCGTTGTATGCTTTGGATAGCGGGGGGGGGGG
GGGGGGGCCCGATAACCTTTGAACTTTTTTTTTTTTTTTTTTCCCCCTTC
CCCCCCTTCCCCCCCCTTTTTTTTTTTTGATTTCCTCATCCCTCATGTCC
CATGCCGTTCTTGTCTTCACTGTAATCCCACGCCCGCTTCAGCACCTCCA
TTCAGGTCTTTCCCTCCTTGCTCTCCAGCACAACTTTCCTAACGTTAACT
CGCCAGCCTATTCCTTTTTCTCGCCCCATATTTTTCTCTCATGTTCGGTT
CAACTTATTGCCTCCTGTATACCTCCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCTTCCCCCCCCCCCCCCCCCTCCCCCCTCCCACACCCCTCCCCT
CTTCCTCCTCCAGTACATCCGTCGACACGTCAACCTCTTCTCGGTGCCGC
ACACAGTCACCGAAGACCTAGCCAGGCAGCCGACGGTCACCGTAAAGAAG
ATAACGCCTGCCTCGGTCCGGGAGTTCCTACGCCGGTCCAACGGCGTTTC
TTCCCAGGGCGACTTGGGCCGGGTGGTCGACTTCTTTGGTGGCGGCGTCG
GAGGCGTCGGCAACAACGGCGGTGGCAGGGGAGCCGCTAGCGCTACCGGT
GGCGGCGGTCAGCAAAGGTCCGGTGCGGGGCCGGCACCGCCTCCGGACAC
CGAACTCTTGCTTGAGCTGCTCGAGTTTTGCTTGTCAGACTGCCGGCCCC
CCGAGGGGGAACGGCCGTCAGGCGTGCCCGCTGGTCGGGCGGGCGTAGAA
GCGGAGGAGGGAGCGGTGGCGGCGGCGGCGGGAGGGGGCCAGGAAGAGCT
CGACGCTGAGGCGGTGGCGAGGAGCGAGGCTCACGCGGCCAGATTTGTGA
GCTTCGGAGAGTGGAATTGGGATTGTTTTTGGCGAGAGAGACATACGGAA
TTTTTTTTTTTTTGCGGGATGTTGCCGTGCACCTCGCGCATGTGAAGATT
ATTTAAGACCTATGCAACGACCGTTTCGCGTCTTGATCTCGGACTTTAAG
CTACGTTCCAACTCCCGTTCGCCTTGGGCAGGCCTTGGGGCAGTGGCAGT
CAGCCATGGACAAGTGCAAGGTCGTCTGGAAGGAGCTCCAGGGGGTGCCC
CTGCTGCCCCTCGCCAACGGTACCGCTGGCAGCTTCCCGACGGCCTTCGC
CTTGGCGGGAAGAAAGAGGTTCGTCGTGGGCACGAGGCGGCAGCAGGGGC
TGCTGCCCAAGCTCACGGACCGGTTCGTGCACCTTAAGGCTACCAGGAGG
CTGGCCAGGTTCTTCGAGCGAGATGATTTCTTGGAGGTGAACAAAAAGCA
GCAGCAGCTTGTGCGTGTTGTCTACGACCGATGAAAATATACCGAGTCAT
TCGCAGCTGTCATGTGAATTCAAGGAAGTGAGTACAAGATGCAGAACCAT
GTCAGCGTGGTGCAGCGCACCCTCCATGGAACTCGCCGAATACCTCACCG
CGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCAACCCGGCGCTCCATCCC
GACCGTGTTGGGATGCGAGGTCAATGGTCTAACGATTACGGCATGCACGG
CTATGAGTCCCCCCCCCCCCACCGACCATCGATGATCGGTCCTGTGGGAA
CAGCATTCCGTCCTCTCGAGGACTCATGGTCAATGGTCTCATCCGCTGTG
GCATGCAAAACATTACCCTCCCGTCCTCTCGTTGTGCCCCCCGTTTTCAG
ATGATGGGCATCGTGCGCTTCTCCCCGGCCCTCCTTGCCGAGAACCTCGA
TCAAGTCCTCCCCCGCACCTGGCGGGGGGAGAAATTCGTGGGCTGGGGGG
GGGGCTCCGCGCCTGCGCAGTCGGGGGGCCCCAAGGCCTCCTGGCTCGCG
CTCTTCTGGACCGAGGTGTCACTGCTGGACGTCGCCTCAGTGCCCGGGCT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11147:140..5540+

>mRNA_Ecto-sp13_S_contig11147.1001.1 ID=mRNA_Ecto-sp13_S_contig11147.1001.1|Name=mRNA_Ecto-sp13_S_contig11147.1001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11147:140..5540+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGAAGCGCTTCTCAGGGCCGGCATCGGCGGGGCTAGTCATGTCCCA
CCACCTCAAGAGCGTACACGCCTCGGTACGACGGCGGCGGGCAGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTCTTCCGACGGTGTGGAG
CAACTCTTCTCGTCACGCCTCCGCGGGGTGAACTCCCCCGCTGCCGGGCG
CATGCTCGGCGTGGGCGGCCGCATGAAGCGGCGCGATGCGGTCGCCAACA
CGGATTGGCGCAAGTCGAGCCTAAACGTGTACATACGGGGATTCCCGGCG
CCCCGTGGCTGCTACAAGCTCAGCGTGTGCACCTCGTCGTGGAGAGACGA
GAGGCGAGACGACGATAGCAAGGGTAACAAGGCAGCAGCAGCAGCAGGAG
GAGGAGGAGGGGGTGGGGGGTGGGCGGAAGGGGAGAGAAGCCGCCGTCGT
ATGGAGGAAGTGGAGGACCTGTGGGTGCTGTCGTACGTGCTGGCACCTCC
CGAGGCGAGAAAGCTCGCGCTGTCGGCGGAGTTCGAGGGGGAGGGGCTGA
CGCCACTCATGACGTGCGCATCCCTCATGCACCGAAGCATCACCGTCGAC
GGGCAGCGGCGTGCTCAAGAGACGCCTGCCGTCCGGGGAAGGCTCTTCAT
CGGTCAGGCGAGTTGTGCCCCGAGTCACCCTAATTTTTTTGATTCTTCCG
TCCTCACTGGCCTACCGTTCCACATCGACGGGCCGTTCTTCGTGTCGAGG
AGAGGAGGCAAGGCCTCGTTTGTAATGGACAGCCTGGAAGACAACAGAGC
GAGCCTGCCCCCTCGAGCCCCTCGGGTAGCCCACGGTAAGTGGAACAAGG
AGCTCTTCGGGAGCGTGTGCACGGAGCTGGTGCCGGAACACATGGTGGAC
CTCAAAGACGAGCTGAGCGGCCGCGACGCCGGGCTGCTTTACCGTTTCTG
GCCCTCAGCCAAGGGCGCCAAGAGGCCGTTCTCGATCATGCTCCCTGGTC
AGATGTACCTTCAACTGGGAGATCTGCCTCTGTACCTTAGCCGTAGCGCC
TCAGAGGGTGGCTTCAAGCGCATGAAGGACGGCTACTTCAAGACCCAGGC
CGTCAGCCCGTTGGTAGAAGAGTACATCCGTCGACACGTCAACCTCTTCT
CGGTGCCGCACACAGTCACCGAAGACCTAGCCAGGCAGCCGACGGTCACC
GTAAAGAAGATAACGCCTGCCTCGGTCCGGGAGTTCCTACGCCGGTCCAA
CGGCGTTTCTTCCCAGGGCGACTTGGGCCGGGTGGTCGACTTCTTTGGTG
GCGGCGTCGGAGGCGTCGGCAACAACGGCGGTGGCAGGGGAGCCGCTAGC
GCTACCGGTGGCGGCGGTCAGCAAAGGTCCGGTGCGGGGCCGGCACCGCC
TCCGGACACCGAACTCTTGCTTGAGCTGCTCGAGTTTTGCTTGTCAGACT
GCCGGCCCCCCGAGGGGGAACGGCCGTCAGGCGTGCCCGCTGGTCGGGCG
GGCGTAGAAGCGGAGGAGGGAGCGGTGGCGGCGGCGGCGGGAGGGGGCCA
GGAAGAGCTCGACGCTGAGGCGGTGGCGAGGAGCGAGGCTCACGCGGCCA
GATTTGCCTTGGGGCAGTGGCAGTCAGCCATGGACAAGTGCAAGGTCGTC
TGGAAGGAGCTCCAGGGGGTGCCCCTGCTGCCCCTCGCCAACGGTACCGC
TGGCAGCTTCCCGACGGCCTTCGCCTTGGCGGGAAGAAAGAGGTTCGTCG
TGGGCACGAGGCGGCAGCAGGGGCTGCTGCCCAAGCTCACGGACCGGTTC
GTGCACCTTAAGGCTACCAGGAGGCTGGCCAGGTTCTTCGAGCGAGATGA
TTTCTTGGAGATGATGGGCATCGTGCGCTTCTCCCCGGCCCTCCTTGCCG
AGAACCTCGATCAAGTCCTCCCCCGCACCTGGCGGGGGGAGAAATTCGTG
GGCTGGGGGGGGGGCTCCGCGCCTGCGCAGTCGGGGGGCCCCAAGGCCTC
CTGGCTCGCGCTCTTCTGGACCGAGGTGTCACTGCTGGACGTCGCCTCAG
TGCCCGGGCTG
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