mRNA_Ecto-sp13_S_contig1114.998.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1114.998.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE) HSP 1 Score: 1536 bits (3978), Expect = 0.000e+0 Identity = 1022/1189 (85.95%), Postives = 1035/1189 (87.05%), Query Frame = 1
Query: 517 QAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGGGGAAGRPLQGGGERGLDGRQTARLCHTLRCHGIVLEILALEMHRGLRPLGAAALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLAVPTRERVFGDGFLYHIPGLERLVGLPPHEGRASEGGGDSFQLVVRAAETPRSEGRAAALRLACEAANRNWSLAEAEAMVMRAFRVFVEVCVLRRQPGYQPAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGEVSPARTPVVVSXXXXXXXXXXXXXXXXXXXXXAVVEP-DRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACDQTLRTLAPALESLFDVAPLSRVLDVDEGVGGVLEANVISRATTISLCLRVRLRLLTAGLLXXXXXXXXXXXXXXXXXXXXXXXAGASVIGDGSVTGGAGAGGRSYGTRERRSSATGGGTATGEGLPEEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASLAGGALEAEGDRTLRAHIVETCVSIMEEMTIPRAYMMAGGHEEGEKWKRERETAVMAAEVERIVREEKVIPRLLERAARASRLACNTFGPLHSPPPPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAKGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPMLMLVRQASADRQCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTACVASXXXXXXXXXGGVSRERMGPREAEAGLSQVFRFVDAFRETMVEGLSLVVSAPPTGGARLTLAVVQESVDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS--PLARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXGGGIADSRPLELVKACALAVTAEEKAALDNXXXXXXXXXXXXQYPCAMTMATPTPVHRGXXXXXXXXA-FAPLRAGVXXXXXXAGGLGFFGRMEDGITAFLVVALSVLR 4071
QAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGGGGAAGRPLQGGGERGLDGRQTARLCHTLRCH IVLEILALEMHRGLRPLGAAALP +EGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTL VPTRERVFGDGFLYHIPGLERLVGLPPHEGRASEGGGDS QLV A+VMRAFRVFVEVCVLRRQPGYQPAPA XXXXXXX PGEVSPARTPVVVS XXXXXXXXXXXXXXXX DRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACDQTLRTLAPALESLFDVAPLSRVLDVDE VGGVLEANVISRATTISLCLRVRLRLLTAGLL XXXXXXXXXXXXXXXXXXXX AGASVIGDGSVTGGAGAGGRSYGTRERRS ATGGGTATGE EEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASL GGALEAEGDRTLRAHIVETCVSIMEEMTIPRAYMMAGGHEEGE+WKRERETAVMAAEVERIVREEKVIPRLLERAARASRLACNTFGPLHSPPPPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KAA+GPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPML LVRQASAD+QCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTA + S GGVSRER+GPREAEAGLSQVFRFVD FRETMVEGLSLVVSAPPTGG RLTLAVVQESVDVAGVVAALGPW+ RWRAQHPGTSTQLLEAVRQATRTAAVLL XXXXXXXXXXXXXXXXXXXXXXXXXXXX P+ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXX GGGIADSRPLELV+ACALAVTAEEKAALDN QYPCAMTMATPTPV+RGXXXXXXXXA FAP RAGV XXXXX GGLGFFGR+EDGITAFLV+ALSVLR
Sbjct: 2 QAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGGGGAAGRPLQGGGERGLDGRQTARLCHTLRCHSIVLEILALEMHRGLRPLGAAALPPPLKAAALPGNGDAAGKVSGGDGDDGGGGGVEGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLVVPTRERVFGDGFLYHIPGLERLVGLPPHEGRASEGGGDSLQLV---------------------------------AVVMRAFRVFVEVCVLRRQPGYQPAPAPAPPSSSSTQASGNPGGXXXXXXXGGD---PGEVSPARTPVVVSRGGVAXXXXXXXXXXXXXXXXXXXXXXDRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACDQTLRTLAPALESLFDVAPLSRVLDVDERVGGVLEANVISRATTISLCLRVRLRLLTAGLLLXXXXXXXXXXXXXXXXXXXXGGAGASVIGDGSVTGGAGAGGRSYGTRERRSLATGGGTATGEDFSEEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASLPGGALEAEGDRTLRAHIVETCVSIMEEMTIPRAYMMAGGHEEGEEWKRERETAVMAAEVERIVREEKVIPRLLERAARASRLACNTFGPLHSPPPPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KAARGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPMLTLVRQASADKQCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTAGIVSSSSSA----GGVSRERIGPREAEAGLSQVFRFVDTFRETMVEGLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPWVERWRAQHPGTSTQLLEAVRQATRTAAVLLVPATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXA-GGGIADSRPLELVEACALAVTAEEKAALDNGGYGVSSSDGGGQYPCAMTMATPTPVYRGXXXXXXXXAVFAPPRAGVGXXXXXXGGLGFFGRVEDGITAFLVLALSVLR 1148
BLAST of mRNA_Ecto-sp13_S_contig1114.998.1 vs. uniprot
Match: D7FGV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI) HSP 1 Score: 865 bits (2235), Expect = 2.160e-292 Identity = 650/753 (86.32%), Postives = 666/753 (88.45%), Query Frame = 1
Query: 1843 QTLRTLAPALESLFDVAPLSRVLDVDEGVGGVLEANVISRATTISLCLRVRLRLLTAGLLXXXXXXXXXXXXXXXXXXXXXXXAGASVIGDGSVTGGAGAGGRSYGTRERRSSATGGGTATGEGLPEEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASLAGGALEAEGDRTLRAHIVETCVSIMEEMTIPRAYMMAGGHEEGEKWKRERETAVMAAEVERIVREEKVIPRLLERAARASRLACNTFGPLHSPPPPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAKGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPMLMLVRQASADRQCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTACVASXXXXXXXXX----GGVSRERMGPREAEAGLSQVFRFVDAFRETMVEGLSLVVSAPPTGGARLTLAVVQESVDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS----PLARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXGGGIADSRPLELVKACALAVTAEEKAALDNXXXXXXXXXXXXQYPCAMTMATPTPVHRGXXXXXXXX--AFAPLRAGVXXXXXXAGGLGFFGRMEDGITAFLVVALSVLR 4071
QTLRTLAPALESLFDVAPLSRVLD+D GVGGVLEANVISRATTISLCLRVRLRLLTAGLLXXXXXXXXXXXXXXXXXXXXXXX SYGTRERRSSATGGGT+ GE PEEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASL GGALEAEGDRTLRAHIVETCVSIM+EMTIPRAYMMAGGHEEGE+WKRERETAVM AEVERIVREEKVIPRLLERAARASRLA T XXXXXXXXXXXXXXXXXXXXXXXX A+GPDAGAATAEGVELLQLIYSVFASAASRGLLTRTM+ESGVVSAM+NDPML LVRQASAD+QCSVPRGYT+QSELSPHWQCYLLALRTTSDLTRTI ASKALSSPLASNA+AARWTA V+ XXXXXXXXX GGVSRERMGPREAEAGLSQVFRFVDAFRETMV GLSLVVSAPPTGG RLTLAVVQES+DVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLL XXXXXXXXXXXXXXXXXXXXXXXXXXX P+ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXX +ADSRPLELVKACALAVTAEEKAA D XXXXXXXXXX QYPCAMTMATPTPVHRGXXXXXXXX AFAPLRAGVXXXXXX GLGFFGR+EDGITAFLV+ALSVLR
Sbjct: 23 QTLRTLAPALESLFDVAPLSRVLDMDGGVGGVLEANVISRATTISLCLRVRLRLLTAGLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------SYGTRERRSSATGGGTSAGEDFPEEASRLSRQARIKLLRRACGTLKELDVLEEDLKARRGGGGKRGPGAAASLPGGALEAEGDRTLRAHIVETCVSIMDEMTIPRAYMMAGGHEEGEEWKRERETAVMVAEVERIVREEKVIPRLLERAARASRLASATXX--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXARGPDAGAATAEGVELLQLIYSVFASAASRGLLTRTMLESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIRASKALSSPLASNAIAARWTAVVSXXXXXXXXXXXXXXGGVSRERMGPREAEAGLSQVFRFVDAFRETMVVGLSLVVSAPPTGGGRLTLAVVQESMDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMADSRPLELVKACALAVTAEEKAARDKGXXXXXXXXXXGQYPCAMTMATPTPVHRGXXXXXXXXXXAFAPLRAGVXXXXXXXXGLGFFGRVEDGITAFLVLALSVLR 743
BLAST of mRNA_Ecto-sp13_S_contig1114.998.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI) HSP 1 Score: 640 bits (1651), Expect = 2.010e-209 Identity = 457/615 (74.31%), Postives = 464/615 (75.45%), Query Frame = 1
Query: 1 WAGVPTAAGPNGGGGGGFVRPLADSLSPDDAYHLRQALVAAMSSQDPDKPVGXXXXXXXXXXXXXXXXXXXXXVKEQPALVVVLFWAQPTPPRKAGATPSVLSTLSPPTGDGETAAVVGGAALSGAVLXXXXXXXXXXXXXQRGLAGGSESLVMALELVLGLWHAEGVGRLGQAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGGGGAAGRPLQGGGERGLDGRQTARLCHTLRCHGIVLEILALEMHRGLRPLGAAALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLAVPTRERVFGDGFLYHIPGLERLVGLPPHEGRASEGGGDSFQLVVRAAETPRSEGRAAALRLACEAANRNWSLAEAEAMVMRAFRVFVEVCVLRRQPGYQPAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGEVSPARTPVVVSXXXXXXXXXXXXXXXXXXXXX-AVVEPDRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACD 1842
WAGVPTAAGP VRPLADSLSPDDAYHLRQALVAAMSSQ+PD+PVGXXXXXXXXXXXXXXXXXXXX VKEQPALVVVLFWAQPTPPRKAGATP+ LST SPPTGDGETAAVVGGAALSGA+L QRGLAGGSESLVMALELVLGLWHAEGVGRLGQAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAG G G GGG G R AA+P XXXXXXX+EGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLAVPTRE S GRAAALRLACEAANRNWSLAEAEA+VMRAFRVFVEVCVLRRQPGYQ APA XXXXXXXXXXXXXXXXXXXXXXX PGEVSPARTPVVVS XXXXXXXXXXXXXXXXXX AVVEPDRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACD
Sbjct: 279 WAGVPTAAGPIXXXXXXVVRPLADSLSPDDAYHLRQALVAAMSSQNPDEPVGXXXXXXXXXXXXXXXXXXXX-VKEQPALVVVLFWAQPTPPRKAGATPNALSTPSPPTGDGETAAVVGGAALSGALLSVLKALSVELADGQRGLAGGSESLVMALELVLGLWHAEGVGRLGQAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGERGRRGATPSGGGGAGTR-----------------------------READGAAVPHASLPRHCPRGNGDAAGKVSGGDXXXXXXXVEGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLAVPTRE----------------------------------------------SGGRAAALRLACEAANRNWSLAEAEAVVMRAFRVFVEVCVLRRQPGYQAAPAPAPXXXXXXXXXXXXXXXXXXXXXXXD---PGEVSPARTPVVVSRGGXXXXXXXXXXXXXXXXXXXAVVEPDRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSRGVRGQMSSDACD 814
BLAST of mRNA_Ecto-sp13_S_contig1114.998.1 vs. uniprot
Match: A0A6H5KHV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV9_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.280e-55 Identity = 121/173 (69.94%), Postives = 124/173 (71.68%), Query Frame = 1
Query: 1 WAGVPTAAGPNGGGGGGFVRPLADSLSPDDAYHLRQALVAAMSSQDPDKPVGXXXXXXXXXXXXXXXXXXXXXVKEQPALVVVLFWAQPTPPRKAGATPSVLSTLSPPTGDGETAAVVGGAALSGAVLXXXXXXXXXXXXXQRGLAGGSESLVMALELVLGLWHAEGVGRLGQ 519
WAGVPTAAGPN GGGGGFVRPLADSLSPDDAYHLRQALVAAMSSQDPDKPVG V+EQPALVVVLFWAQP+PPRKAGATP+V ST AVVG AALSGAVL QRGLAGGSE LVMALELVLGLWHAEGVGRLGQ
Sbjct: 296 WAGVPTAAGPNDGGGGGFVRPLADSLSPDDAYHLRQALVAAMSSQDPDKPVGGGGVAIEEKRAAALGLLLSA-VREQPALVVVLFWAQPSPPRKAGATPNVSSTXXXXXXXXXXXAVVGSAALSGAVLSVLKALSVELADGQRGLAGGSEPLVMALELVLGLWHAEGVGRLGQ 467 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1114.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1114.998.1 >prot_Ecto-sp13_S_contig1114.998.1 ID=prot_Ecto-sp13_S_contig1114.998.1|Name=mRNA_Ecto-sp13_S_contig1114.998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1361bp WAGVPTAAGPNGGGGGGFVRPLADSLSPDDAYHLRQALVAAMSSQDPDKPback to top mRNA from alignment at Ecto-sp13_S_contig1114:527..14347- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1114.998.1 ID=mRNA_Ecto-sp13_S_contig1114.998.1|Name=mRNA_Ecto-sp13_S_contig1114.998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=13821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1114:527..14347- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1114:527..14347- >mRNA_Ecto-sp13_S_contig1114.998.1 ID=mRNA_Ecto-sp13_S_contig1114.998.1|Name=mRNA_Ecto-sp13_S_contig1114.998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1114:527..14347- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |