mRNA_Ecto-sp13_S_contig11136.996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11136.996.1
Unique NamemRNA_Ecto-sp13_S_contig11136.996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11136.996.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 3.550e-56
Identity = 114/152 (75.00%), Postives = 123/152 (80.92%), Query Frame = 3 
Query:   48 QQHQSDSDFDEALTGLKEGHDRLEDMIRKADDHRARVEAKLDQVLEALSNSNGAGSAESRGRGSVSDATAPRAKLEQGAAGPPAVAGRESDRRETSPPGVTAAGRGREIGDGGQGRATGGDSGGDDRPRRVSSGGDLDEFIDHYHAEASRER 503
            +QHQS+  F EALTGLK+GHDRLEDMIR AD++RARVEAKLDQVLEALSNS GAG+ ES+G GSVSDATAPRAKLEQGAA PP VAGRESDRRETS PGV  AGRGREI DGGQGRATGG               DLDEFIDHYHAEA+ +R
Sbjct: 1156 EQHQSERHFVEALTGLKKGHDRLEDMIRTADNNRARVEAKLDQVLEALSNSTGAGNTESKGHGSVSDATAPRAKLEQGAAAPPVVAGRESDRRETSSPGVVVAGRGREIDDGGQGRATGGXXXXXXXXXXXXXXXDLDEFIDHYHAEANIDR 1307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11136.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM43_ECTSI3.550e-5675.00Ankyrin repeat Transient receptor potential channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11136contigEcto-sp13_S_contig11136:1876..3060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score167.5
Seed ortholog evalue3.9e-39
Seed eggNOG ortholog2880.D8LM43
Model size604
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size384
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.8443792-UTR-Ecto-sp13_S_contig11136:1875..19941681462578.8443792-UTR-Ecto-sp13_S_contig11136:1875..1994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11136 1876..1994 +
1681462578.8532717-UTR-Ecto-sp13_S_contig11136:2575..25781681462578.8532717-UTR-Ecto-sp13_S_contig11136:2575..2578Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11136 2576..2578 +
1681462578.8704193-UTR-Ecto-sp13_S_contig11136:2962..30601681462578.8704193-UTR-Ecto-sp13_S_contig11136:2962..3060Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11136 2963..3060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.8610234-CDS-Ecto-sp13_S_contig11136:2578..29621681462578.8610234-CDS-Ecto-sp13_S_contig11136:2578..2962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11136 2579..2962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11136.996.1prot_Ecto-sp13_S_contig11136.996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11136 2579..2962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11136.996.1

>prot_Ecto-sp13_S_contig11136.996.1 ID=prot_Ecto-sp13_S_contig11136.996.1|Name=mRNA_Ecto-sp13_S_contig11136.996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MIRKADDHRARVEAKLDQVLEALSNSNGAGSAESRGRGSVSDATAPRAKL
EQGAAGPPAVAGRESDRRETSPPGVTAAGRGREIGDGGQGRATGGDSGGD
DRPRRVSSGGDLDEFIDHYHAEASRER*
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mRNA from alignment at Ecto-sp13_S_contig11136:1876..3060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11136.996.1 ID=mRNA_Ecto-sp13_S_contig11136.996.1|Name=mRNA_Ecto-sp13_S_contig11136.996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11136:1876..3060+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCTCCTTCCGACCACCATGTCTTGTGGCAAATGTGTCGAATCCACAG
CAACATCAATCGGACAGCGATTTCGATGAAGCCCTTACGGGACTGAAAGA
AGGACACGATCGATTGGAGGTAAGAGAGGGCGTGACCATCATGGAAAACG
TCTTGAGACCGAAGTCGCCGTGACGATGTACGCACCATGTCCACGACAAC
CTCACATCACCTGGTCCAGGTTCCGCCACAGTATTGATAGTGGAAACCAA
AACACAACGAGTGGCTATCACTTTGCATGTTGAATATCGCTCCTCTCTGT
ACGTTGATCGCAATACCTCTCTGTCTTGGAAGGGTAGCACCACCGAATTA
ACATTTAATCTTCTCTAGCAATGATTGGGTGAACTATGTCCACGTAAAGA
CGTTTTTCGCGATACAGCCCTCTGCAGTTCTGGTGCGCCAGATGTCGCTA
GTAAAATGTTGGTCCGAACGTGCGCAGATGGCATTATCCCTGCTTCCTCG
GTCGGTTCTCGGAACAGACGGCGCTAGATGCTGCGACGCTGGACACTCTT
GACACGCAGGAATTAGCACACTTTCAGGCAAACGTTTGACCCACAGCAGT
AGGTATGATGTGGAGGAATCACGATGGTTTCCGAAATGGGTGTGGCGACC
GTTTTTCTCGCTGCTTGTCACTTGCGCACGCGGAATCCACACCCGGGCAG
GACATGATCCGGAAAGCGGACGACCACAGGGCAAGGGTAGAAGCCAAGCT
GGACCAAGTTCTCGAGGCCCTCAGCAACAGCAACGGCGCCGGCAGCGCGG
AGAGCAGAGGTCGCGGCAGTGTTTCCGACGCCACTGCACCACGCGCAAAG
CTGGAACAAGGGGCTGCGGGGCCGCCCGCTGTTGCCGGTCGTGAAAGCGA
TAGGAGGGAGACATCACCGCCTGGTGTCACTGCTGCTGGCCGGGGGAGGG
AAATAGGTGATGGGGGACAAGGTCGGGCTACAGGAGGCGATAGTGGTGGT
GACGATCGACCAAGAAGGGTTAGTTCGGGGGGCGATCTGGACGAGTTTAT
AGATCACTATCATGCGGAGGCGAGTAGAGAGCGGTGACTTGGTGCATTAT
GTTTTGGCTCCCTATACTGTAGTTGAAGACCCTGGGGGAGCACAACCCCT
TTTCCTGTAGGTGTGAATAGAGATGTGCGCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11136:1876..3060+

>mRNA_Ecto-sp13_S_contig11136.996.1 ID=mRNA_Ecto-sp13_S_contig11136.996.1|Name=mRNA_Ecto-sp13_S_contig11136.996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11136:1876..3060+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCGGAAAGCGGACGACCACAGGGCAAGGGTAGAAGCCAAGCTGGA
CCAAGTTCTCGAGGCCCTCAGCAACAGCAACGGCGCCGGCAGCGCGGAGA
GCAGAGGTCGCGGCAGTGTTTCCGACGCCACTGCACCACGCGCAAAGCTG
GAACAAGGGGCTGCGGGGCCGCCCGCTGTTGCCGGTCGTGAAAGCGATAG
GAGGGAGACATCACCGCCTGGTGTCACTGCTGCTGGCCGGGGGAGGGAAA
TAGGTGATGGGGGACAAGGTCGGGCTACAGGAGGCGATAGTGGTGGTGAC
GATCGACCAAGAAGGGTTAGTTCGGGGGGCGATCTGGACGAGTTTATAGA
TCACTATCATGCGGAGGCGAGTAGAGAGCGGTGA
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