mRNA_Ecto-sp13_S_contig11128.989.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11128.989.1
Unique NamemRNA_Ecto-sp13_S_contig11128.989.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11128.989.1 vs. uniprot
Match: A0A6H5JXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.770e-31
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    1 EDERRLSEDAIKKVENTIRKGLWDKHLDNAEACFRALTGGQGGKMGLEGLRVAVRLARVRGEAASCQVLKQVLQ 222
            EDERRL E AIKKVENTIRKGLWDKHLDNAEACFRALTGGQGG MGLEGLRVAVR+ARVRGEAAS QVL   LQ
Sbjct:  464 EDERRLPEGAIKKVENTIRKGLWDKHLDNAEACFRALTGGQGGTMGLEGLRVAVRIARVRGEAASSQVLGWSLQ 537
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BLAST of mRNA_Ecto-sp13_S_contig11128.989.1 vs. uniprot
Match: D7G7F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.820e-31
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 EDERRLSEDAIKKVENTIRKGLWDKHLDNAEACFRALTGGQGGKMGLEGLRVAVRLARVRGEAASCQVLKQVLQ 222
            EDERRL E+AIKKVENTIR GLWDKHLDNA+ACFRALTGGQGGKMGLEGLRVAVR+ARVRGEAAS QVL   LQ
Sbjct:  781 EDERRLPEEAIKKVENTIRNGLWDKHLDNAKACFRALTGGQGGKMGLEGLRVAVRIARVRGEAASSQVLGWSLQ 854
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11128.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXC8_9PHAE3.770e-3189.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F4_ECTSI3.820e-3187.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11128contigEcto-sp13_S_contig11128:4006..4395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.268437-CDS-Ecto-sp13_S_contig11128:4006..41831681462578.268437-CDS-Ecto-sp13_S_contig11128:4006..4183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11128 4007..4183 -
1681462578.2771556-CDS-Ecto-sp13_S_contig11128:4308..43951681462578.2771556-CDS-Ecto-sp13_S_contig11128:4308..4395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11128 4309..4395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11128.989.1prot_Ecto-sp13_S_contig11128.989.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11128 4007..4395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11128.989.1

>prot_Ecto-sp13_S_contig11128.989.1 ID=prot_Ecto-sp13_S_contig11128.989.1|Name=mRNA_Ecto-sp13_S_contig11128.989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
EDERRLSEDAIKKVENTIRKGLWDKHLDNAEACFRALTGGQGGKMGLEGL
RVAVRLARVRGEAASCQVLKQVLQRHGSESSTSSSGRE
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mRNA from alignment at Ecto-sp13_S_contig11128:4006..4395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11128.989.1 ID=mRNA_Ecto-sp13_S_contig11128.989.1|Name=mRNA_Ecto-sp13_S_contig11128.989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11128:4006..4395- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGACGAGCGGAGGCTCTCTGAAGACGCCATCAAGAAAGTCGAGAACAC
CATTAGGAAAGGACTCTGGGACAAACACCTCGACAACGTGAGAAGGCATC
GCGTTGACCGTTCGACAATATATGAGTGCCTGTTGGCGTTCATGAAACCC
TTGAGAGGATCGAATGTAAGTCCTTGTTCTCCGTGTTTCCCGTTCAACGA
TACTGCGTACAGGCGGAGGCGTGCTTTCGCGCGCTTACCGGCGGACAAGG
AGGAAAGATGGGGCTCGAGGGCCTCAGGGTAGCGGTCCGCCTTGCCCGCG
TTCGGGGAGAAGCGGCGTCTTGCCAGGTTCTCAAGCAAGTGCTGCAAAGG
CACGGGTCGGAAAGCTCCACCTCCAGCTCAGGGAGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11128:4006..4395-

>mRNA_Ecto-sp13_S_contig11128.989.1 ID=mRNA_Ecto-sp13_S_contig11128.989.1|Name=mRNA_Ecto-sp13_S_contig11128.989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11128:4006..4395- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGACGAGCGGAGGCTCTCTGAAGACGCCATCAAGAAAGTCGAGAACAC
CATTAGGAAAGGACTCTGGGACAAACACCTCGACAACGCGGAGGCGTGCT
TTCGCGCGCTTACCGGCGGACAAGGAGGAAAGATGGGGCTCGAGGGCCTC
AGGGTAGCGGTCCGCCTTGCCCGCGTTCGGGGAGAAGCGGCGTCTTGCCA
GGTTCTCAAGCAAGTGCTGCAAAGGCACGGGTCGGAAAGCTCCACCTCCA
GCTCAGGGAGAGAG
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