mRNA_Ecto-sp13_S_contig11127.987.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11127.987.1
Unique NamemRNA_Ecto-sp13_S_contig11127.987.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: D7G8E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.250e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD
Sbjct:   83 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 146
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.590e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD
Sbjct:  174 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 237
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A4D9DG01_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DG01_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.780e-28
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            + R+GA +VVD  SLEFV+G+TVDF EDMMRSAFAV++NP+SESACGCGSSFA+KNFEKNPA+D
Sbjct:   61 YGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAIKNFEKNPAID 124
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.160e-27
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            + R+GA +VVD  SLEFV+G+TVDF EDMMRSAFAV++NP+SESACGCGSSFA+KNFEKNPA+D
Sbjct:  130 YGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A7S3NJQ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJQ0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.340e-27
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            F RDG  +VVD TSLEFV+GATVD++E+M+RSAF V+NNP SESACGCGSSFALKNF+ NPA+D
Sbjct:   83 FSRDGHDVVVDETSLEFVRGATVDYQEEMIRSAFVVINNPNSESACGCGSSFALKNFDSNPAID 146
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A7S2G7Q7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7Q7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.000e-26
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAV+NNP SESACGCGSSFALK+F  NPALD
Sbjct:   42 FERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 105
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A835ZPC5_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.490e-26
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDGA +V+D  SL FVKGATVDF++DMMR+AF+VLNNP SE+ACGCGSSFA+K FE NPA D
Sbjct:  170 FERDGAQVVIDEVSLGFVKGATVDFQQDMMRAAFSVLNNPNSENACGCGSSFAVKAFEANPARD 233
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A7S2CX78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CX78_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.870e-25
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAV+NNP SESACGCGSSFALK+F  NPALD
Sbjct:   98 FERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 161
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: A0A7S2RUW2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUW2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.520e-25
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 192
            FERDGA +V+D  SLEFV GATVDF E+M+RS+F V+NNP SESACGCGSSFALK F  NPA+D
Sbjct:   96 FERDGASVVIDEASLEFVTGATVDFVEEMIRSSFVVVNNPNSESACGCGSSFALKAFSDNPAVD 159
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BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Match: F0YDS2_AURAN (Fe-S_biosyn domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDS2_AURAN)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-24
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKN 180
            F RDG  +VVD +S+EFV+GATVDFEE+M+RSAF V +NP SESACGCGSSFALKNFE+N
Sbjct:   32 FSRDGCDVVVDDSSIEFVRGATVDFEEEMIRSAFVVSHNPNSESACGCGSSFALKNFEEN 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11127.987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E7_ECTSI1.250e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCK6_9PHAE1.590e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DG01_9STRA1.780e-2876.56Fe-S_biosyn domain-containing protein n=1 Tax=Nann... [more]
W7UC88_9STRA1.160e-2776.56Iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
A0A7S3NJQ0_9STRA1.340e-2775.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2G7Q7_9STRA4.000e-2670.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZPC5_9STRA9.490e-2675.00Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A7S2CX78_9STRA1.870e-2570.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RUW2_9STRA2.520e-2573.44Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0YDS2_AURAN1.390e-2475.00Fe-S_biosyn domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11127contigEcto-sp13_S_contig11127:1650..2704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score131.3
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D7G8E7
Preferred nameISA2
Model size195
KEGG koko:K15199,ko:K22063,ko:K22072
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010467,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019538,GO:0019752,GO:0022607,GO:0031163,GO:0031974,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0316@1,KOG1119@2759
Cds size195
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.1297443-CDS-Ecto-sp13_S_contig11127:1649..17781681462578.1297443-CDS-Ecto-sp13_S_contig11127:1649..1778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11127 1650..1778 -
1681462578.1410177-CDS-Ecto-sp13_S_contig11127:2638..27041681462578.1410177-CDS-Ecto-sp13_S_contig11127:2638..2704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11127 2639..2704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11127.987.1prot_Ecto-sp13_S_contig11127.987.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11127 1650..2704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11127.987.1

>prot_Ecto-sp13_S_contig11127.987.1 ID=prot_Ecto-sp13_S_contig11127.987.1|Name=mRNA_Ecto-sp13_S_contig11127.987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
FERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGS
SFALKNFEKNPALD*
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mRNA from alignment at Ecto-sp13_S_contig11127:1650..2704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11127.987.1 ID=mRNA_Ecto-sp13_S_contig11127.987.1|Name=mRNA_Ecto-sp13_S_contig11127.987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1055bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11127:1650..2704- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGAACGGGATGGGGCCGTGCTGGTTGTAGACGCCACCTCGCTCGAGTT
CGTCAAAGGCGCAACGGTAAGCCAGCGCCCGGAACACGTTTGTCGGGTGG
CTCGGTAGCGCCGCGAGTGCCTTTATGCAAGACGCATCAATGCCTTAGGG
GCAAGAAAGCGTGATGGTGTTGTCTCTCAACGAAGAAACTGGACAGTAGT
ATTCATCCCCTGCTGTCATGGTCGAACTACCAAGGTGTACAGGTACATGA
TTGTAAGTACACCTCCACCCCCAGCCCGCATTTCCGTGCTTTCGTGATCC
CTCGGGTACGTCGCGGTTTAGTTCACGTCCCCCCCCCCCCCCGGGCCGTC
TTTTCGGTGTGTTGGGGGCCCGGGGGGGGGGGGGGGGGGGGGGTGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGGGGGGTCACTCGGCATGT
TGTTACTCAAGCTTCTACCATTTTTTACTTGCATGAATAAGTTGTTTGCT
GCTGGCTGGCTAAACTGAAAACTGCAAGCATCTTCAGGTATTTTTCAGTC
ATAATTTGTATGTGATTGTTTGCATTCACCTACGTCGTTGGTTTGAGGTG
GTTCTCTGCAGACAAACAGCTTCTTCGTGCCCCACTCTCCTACCCACCCG
CCGCCGTGGTAGACCTCAGACGATGCTGTGGTTCTTTATGCACTGTAGCT
GTTTTGTGTCCTCGCGATTGTCGACAGCGTGTATGTGTGCTGTGCTGGAA
GGCTTCGCCTCTAAACCCTGTGCGAACCGTCACCAAGAGGGCTGACCTCA
ACGTTGCAGACGAGTAAACTCACACAAGTTTCGAGCTCAAAGCCCATCCC
GTTCCCACCCCTCCCATATTTCTCCATCGACACTCGGCATGAAAAACGAA
AAACTAATGCACGTAAAAAATGACAGGTGGACTTTGAGGAAGACATGATG
CGAAGCGCGTTCGCTGTGCTCAACAACCCGGTGTCGGAGAGCGCGTGCGG
GTGCGGCAGCTCCTTCGCCCTCAAGAATTTCGAGAAGAACCCCGCACTCG
ACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11127:1650..2704-

>mRNA_Ecto-sp13_S_contig11127.987.1 ID=mRNA_Ecto-sp13_S_contig11127.987.1|Name=mRNA_Ecto-sp13_S_contig11127.987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11127:1650..2704- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGAACGGGATGGGGCCGTGCTGGTTGTAGACGCCACCTCGCTCGAGTT
CGTCAAAGGCGCAACGGTGGACTTTGAGGAAGACATGATGCGAAGCGCGT
TCGCTGTGCTCAACAACCCGGTGTCGGAGAGCGCGTGCGGGTGCGGCAGC
TCCTTCGCCCTCAAGAATTTCGAGAAGAACCCCGCACTCGACTGA
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