mRNA_Ecto-sp13_S_contig11121.985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11121.985.1
Unique NamemRNA_Ecto-sp13_S_contig11121.985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.230e-30
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQGK 177
            MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALARE VGYNRNVFV G+PQGK
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGK 59
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.710e-13
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQGKR 180
            ATTFWR+AG++YLEYA+  TT +R  LKEP RS A+ R  V YNR VF DG    K+
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAKK 62
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 65.1 bits (157), Expect = 9.780e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 SQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQGK 177
            S  TTFWR+AGM+YL+Y +KA T MRGALKEPA+  A+ +E   Y  + + DGK   K
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDGKQSPK 117
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 62.4 bits (150), Expect = 2.660e-10
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGK 165
            TTFWR+AGM+YL+Y +KA   MR  LKEPA++ A+A+E  GYN  V+  GK
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAGK 57
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A444ENQ8_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444ENQ8_ENSVE)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-8
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQ 171
            A  FWR AGMTY+ Y++   +++RG LKEP RS A+ARE V +  + + DGKP+
Sbjct:    7 AVPFWRAAGMTYITYSNICASLVRGCLKEPHRSEAVAREKVHFTVSKWADGKPE 60
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.280e-8
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNR 144
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP R+  +A+E + + R
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKR 49
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A2V0NKU9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKU9_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   19 FWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGK 165
            FWR AGM+YL+YA+    +MRG +KEP +S ALAR+ + +  + F DGK
Sbjct:    9 FWRAAGMSYLKYANICADMMRGVMKEPFKSKALARQSIYFRSSKFADGK 57
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.500e-7
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQGKRE 183
            +TT+WR+AGMTYL+Y ++A   +R  LKEP +S  LA+    YN + +  G    K+E
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAKKE 62
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.520e-7
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQGKRE 183
            AT FWR+AGM+YL+Y ++A   +R ALKEP +S   A+    Y  + +VDG    K E
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSKTE 62
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BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Match: A0A427B687_ENSVE (ATPase_AAA_core domain-containing protein n=3 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427B687_ENSVE)

HSP 1 Score: 58.2 bits (139), Expect = 4.170e-7
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNVFVDGKPQ 171
            A  FWR AGMTY+ Y++   +++RG LKEP RS A+ARE V +  + + DGKP+
Sbjct:  552 AVPFWRAAGMTYISYSNICASLVRGCLKEPHRSEAVAREKVHFTVSKWADGKPE 605
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11121.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FZG1_ECTSI6.230e-3094.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS1_9STRA7.710e-1357.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G8W9_PHATC9.780e-1153.45Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K8B7_FISSO2.660e-1056.86Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A444ENQ8_ENSVE1.500e-850.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
W7U8A3_9STRA3.280e-855.56Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
A0A2V0NKU9_9CHLO1.010e-751.02Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A448YV42_9STRA2.500e-743.10Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7ER17_9STRA3.520e-744.83Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A427B687_ENSVE4.170e-750.00ATPase_AAA_core domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11121contigEcto-sp13_S_contig11121:3793..5488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score60.5
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog161934.XP_010677215.1
Model size429
KEGG koko:K02135
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0098796,GO:0098798,GO:0098800
Exons2
EggNOG free text desc.ATP synthase subunit epsilon
EggNOG OGs37W9H@33090,3GK5A@35493,KOG3495@1,KOG3495@2759
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
Cds size204
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.9386456-CDS-Ecto-sp13_S_contig11121:3792..38431681462577.9386456-CDS-Ecto-sp13_S_contig11121:3792..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11121 3793..3843 +
1681462577.9545732-CDS-Ecto-sp13_S_contig11121:5110..52631681462577.9545732-CDS-Ecto-sp13_S_contig11121:5110..5263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11121 5111..5263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.9708478-UTR-Ecto-sp13_S_contig11121:5263..54881681462577.9708478-UTR-Ecto-sp13_S_contig11121:5263..5488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11121 5264..5488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11121.985.1prot_Ecto-sp13_S_contig11121.985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11121 3793..5263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11121.985.1

>prot_Ecto-sp13_S_contig11121.985.1 ID=prot_Ecto-sp13_S_contig11121.985.1|Name=mRNA_Ecto-sp13_S_contig11121.985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREVVGYNRNV
FVDGKPQGKRESFFSFF*
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mRNA from alignment at Ecto-sp13_S_contig11121:3793..5488+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11121.985.1 ID=mRNA_Ecto-sp13_S_contig11121.985.1|Name=mRNA_Ecto-sp13_S_contig11121.985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11121:3793..5488+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAGGCAACGACGTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GGTGAGACGAACAAAGCAAGCAGAGAAAGCTTGATCGAAACGCGCAAGAA
AGAAGAACGTTTCTGCACGCATGGAGAAGGGCGTCGCACAGAACTCGCCG
CGCCCACTAAATCAGCAGGGCAGCAGCAAGGGCGGGCGGGGGCCGAAAAG
GAGACGCGGCGACTCTCAAATGGCGCACCAAGAGCAGGGAACCGTTGTTG
CATCGGTGTTGCGCCTATCTCTCTCTAGTGTTTACCCGCCAATACCCCCT
ATCAGCTTGGTATCATCGCATCACTGCGAACCTGATCTTCCAATTTCTGC
CCTCTCGAGGTAGTCATTTTTCCCCATCTGCTGCCAATCCTTGATCATCG
GTAGTCTTGCAAGCTGTTCGTGTTGTGGGAACATGGGAATCAATAGAGCC
TAGACCCGTTCCGGATCGTGACGGGCCAAAGGAAAAACACTCCCAATCGC
ACTCGCCTCCTGTTTCTAAACGCAACAAGCGGGCCTCTGCTTTGCATCTT
GCACGAAAGCCTCTCTTTCCGTGTGCATTCCGTATGTTATGCTCGACTGC
CAGCGGCCAGCGGCGGTCGACGAAACCTACAGCAGTCTACATACAGCAGT
AGTAGCCGTCGGTCATAATGCGTAAGATGGATTTTTGCTGCTCGTCGGCT
GTGGCTGTGGCAGGACAGTGTTGTGTCATCCATGTCCAGGGGTGGGTTCA
AGAGGATTCCTACAGACATGCACGATGAGTTATTTGCGACATGAAACAGC
AATATTAGTGTTTCCACCCAACCCAGCCGGACGTGAACTTCGGTAAGTAG
TGCAAGGGAGAGCGATCCGAACACTGCCCGTCTTGCCCTCCCCTGTCGTT
TATACGCTCTCCCTTCGTCCAAGGCCGGCCGTACGAAAAGACTTGATGCA
TCCGGAACAGAAAAAACTCCAAGACACGAAACCGTTTACTGCTGTACATT
TGCATCTAGACGCCACCCTCCTCCCCCCCTCAAGACCTTTCAATTCGATC
AAGTAAAACATGTTGGATACAGTACGCAACCGGGCAAGTAGGGTTAGGGA
ATAGAGTCTGCGTCTCCTCTCCCCTCCCGGTTTTTTGTCCTCGTAAATTT
ATTAATCTCGCGAAGGCGGTACACGTCCCTACGTGTGCCTCTACATATCA
CTAGCGCCCTGCTCTACCCCTCACCCCAACCACCGCCACCTCGATCAGAG
CATCAACTACCATGCCAACTCTCACCTCCTCCGCGACACCGTGGCCTCGA
TTTTTTGTCCCGCCGCAGTACGCCAGCAAGGCAACCACGGTCATGCGCGG
CGCCCTCAAGGAGCCCGCCCGCAGCACGGCCTTGGCGCGGGAAGTGGTGG
GGTACAACCGCAACGTCTTCGTCGACGGCAAGCCGCAGGGCAAACGTGAG
AGTTTCTTTTCCTTTTTCTAGAATATCACGACAAATCCAGCTCTGTCCAT
ACACAAGGGACTGTAGGATAAATAGTAATCAAATCTAGCGTTCGCCTGTA
TGTGCTGCTACGATTCCAAATACAGCGATGTATTCCCTGTGTGTATGTAG
CAGGCTCAACAAGATAGCTCGGTGGCCATCTTGTACATCGGACTGTCTGT
GTTATGCCGGGGTGAACTTATTTTGCGTGTTCGTCGTGAAGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11121:3793..5488+

>mRNA_Ecto-sp13_S_contig11121.985.1 ID=mRNA_Ecto-sp13_S_contig11121.985.1|Name=mRNA_Ecto-sp13_S_contig11121.985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11121:3793..5488+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAGGCAACGACGTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GTACGCCAGCAAGGCAACCACGGTCATGCGCGGCGCCCTCAAGGAGCCCG
CCCGCAGCACGGCCTTGGCGCGGGAAGTGGTGGGGTACAACCGCAACGTC
TTCGTCGACGGCAAGCCGCAGGGCAAACGTGAGAGTTTCTTTTCCTTTTT
CTAG
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