mRNA_Ecto-sp13_S_contig11119.977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11119.977.1
Unique NamemRNA_Ecto-sp13_S_contig11119.977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11119.977.1 vs. uniprot
Match: D7FT50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT50_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 9.300e-174
Identity = 273/301 (90.70%), Postives = 279/301 (92.69%), Query Frame = 1 
Query:    1 YYADKVQIREAAAADAVVAASRAKSRGPEARGSGGRPATEGREKKKQTVDVAASLQKLKAFILKPKKAAKAASLMADLMEAHMRPDNARMFFRALKPLAEEPAGEAALAAGEGGARSFRNLAERASEWVATPLEGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALGDVTGGGMATDGTAGEGDDGXXXGSARGNGVSLSLERKLALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGELRDTLDGFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 903
            YYAD+VQIR AAAADAVVAASRAKSRGPEARGSGGRP TEGREKK QTVDVAASLQKLK FILKPKKAAKAASLMADLMEAH+RP+NARMFFRALKPLAEEPAGEAALAAGEGGAR+FR LA+RASEWV  P EGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALG VTGGG ATDGT       XX GSA GN VSLSLERK ALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEG+LRDTLD FTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR
Sbjct:  185 YYADRVQIRAAAAADAVVAASRAKSRGPEARGSGGRPETEGREKKTQTVDVAASLQKLKVFILKPKKAAKAASLMADLMEAHLRPENARMFFRALKPLAEEPAGEAALAAGEGGARAFRKLAQRASEWVGAPSEGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALGGVTGGGKATDGTXXXXXXXXXTGSAGGNRVSLSLERKTALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGDLRDTLDDFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 485
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BLAST of mRNA_Ecto-sp13_S_contig11119.977.1 vs. uniprot
Match: A0A8J2SLZ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLZ0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-9
Identity = 74/263 (28.14%), Postives = 125/263 (47.53%), Query Frame = 1 
Query:  127 EKKKQTVDVAASLQKLKAFI-----LKPKKAAKAASLMADL--MEAHMRPDNARMFFRALKPLAEEPAGEAALAAGEGGARSFRNLAERASEWVATPLEGVRAVTWEL-LFGLRHDTKTDDSFTFARAIKRLREAIEALGDVTGGGMATDGTAGEGDDGXXXGSARGNGVSLSLERKLALILVMKEAFKSYHLA-WARSSIEPAFKAAADRRRLFPEGELRDTLDGFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKR 888
            +K +QTVD AA+++++ A +         KA+KA +++A L  ++  +  + A ++  AL+  A   A    L    G A      A+R+S  V    + V+  TW L L   R   +TDD++ F  A+KR+ +A+EALG              E D               +++R+ A++  +K  + +Y    WA++ +E A  A A+RR LF E + R  +D  T  +  +QR   GL    +  VR  + T+HP+   R
Sbjct:  131 KKTEQTVDAAATVKRVCAILKSSARTNAAKASKALAMLATLAGVDGGVTEETAPLYVDALRSFAASGAVSDGLVGPLGDAVEALGKADRSSFGVD---DRVQVATWRLSLRTARTLRETDDTYDFCAAMKRVHKAVEALG------------LDESD--------------AAVQRRDAIVHCLKSGWAAYESKPWAKTPVEAAVLACAERRHLFSEAQ-RTRIDRLTTQVKSKQR---GLCRVETAPVRDVDDTSHPLREVR 360
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BLAST of mRNA_Ecto-sp13_S_contig11119.977.1 vs. uniprot
Match: A0A7S2HDH6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDH6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.660e-6
Identity = 45/143 (31.47%), Postives = 63/143 (44.06%), Query Frame = 1 
Query:  457 TDDSFTFARAIKRLREAIEALGDVTGGGMATDGTAGEGDDGXXXGSARGNGVSLSLERKLALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGELRDTLDGFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNK 885
            +DD++TFARA+KR+R A+E + D  G                      G G      R+L L  +     K   L WA+  IE     AA+ R  F EG  R+ LD  T+ +   QR         +R+VR  +S  HP+ NK
Sbjct:   65 SDDTYTFARAMKRVRGAVEGVADKYG-------------------KDEGGGCY----RRLILACLETSLVKRSQL-WAKPEIERTMTLAAENRLHFSEGAERNHLDSLTEKMRHGQRK-----VIVNRTVRVVDSITHPLRNK 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11119.977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT50_ECTSI9.300e-17490.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2SLZ0_9STRA1.080e-928.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2HDH6_9STRA6.660e-631.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11119contigEcto-sp13_S_contig11119:1..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size906
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003580.1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.3096943-CDS-Ecto-sp13_S_contig11119:0..2781681462577.3096943-CDS-Ecto-sp13_S_contig11119:0..278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11119 1..278 +
1681462577.3214095-CDS-Ecto-sp13_S_contig11119:726..8981681462577.3214095-CDS-Ecto-sp13_S_contig11119:726..898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11119 727..898 +
1681462577.329777-CDS-Ecto-sp13_S_contig11119:1112..13791681462577.329777-CDS-Ecto-sp13_S_contig11119:1112..1379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11119 1113..1379 +
1681462577.3409936-CDS-Ecto-sp13_S_contig11119:1656..17821681462577.3409936-CDS-Ecto-sp13_S_contig11119:1656..1782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11119 1657..1782 +
1681462577.3525784-CDS-Ecto-sp13_S_contig11119:1997..20601681462577.3525784-CDS-Ecto-sp13_S_contig11119:1997..2060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11119 1998..2060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11119.977.1prot_Ecto-sp13_S_contig11119.977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11119 1..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11119.977.1

>prot_Ecto-sp13_S_contig11119.977.1 ID=prot_Ecto-sp13_S_contig11119.977.1|Name=mRNA_Ecto-sp13_S_contig11119.977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
YYADKVQIREAAAADAVVAASRAKSRGPEARGSGGRPATEGREKKKQTVD
VAASLQKLKAFILKPKKAAKAASLMADLMEAHMRPDNARMFFRALKPLAE
EPAGEAALAAGEGGARSFRNLAERASEWVATPLEGVRAVTWELLFGLRHD
TKTDDSFTFARAIKRLREAIEALGDVTGGGMATDGTAGEGDDGEGTGSAR
GNGVSLSLERKLALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPE
GELRDTLDGFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVI
R*
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mRNA from alignment at Ecto-sp13_S_contig11119:1..2060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11119.977.1 ID=mRNA_Ecto-sp13_S_contig11119.977.1|Name=mRNA_Ecto-sp13_S_contig11119.977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11119:1..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACGCGGACAAGGTTCAAATTCGCGAAGCAGCGGCTGCGGATGCAGT
GGTGGCAGCGTCGAGAGCTAAGAGCCGAGGGCCAGAGGCTCGAGGTTCTG
GAGGAAGGCCGGCGACGGAGGGCCGTGAGAAGAAAAAGCAGACGGTGGAC
GTGGCAGCCTCGCTGCAGAAACTCAAGGCGTTCATTCTCAAGCCCAAGAA
AGCGGCGAAAGCGGCATCGCTCATGGCAGACCTGATGGAGGCGCATATGC
GTCCGGACAACGCCCGGATGTTTTTCAGGTACAGTGGGGGTCCCTTTTTA
GCGCCGGTTGAATAGTGCCGGTGCCCGATATACTGCCGGTGTTTTCGGCG
GGCACACACTGATTTCGTCCTCAATACTTTGAACAGTACCGGTGTGGTAT
AGTACCGGTGAATTGCTGGGCACATGCCGGCATCAGAGATCTCTACAGTA
TGTGAAAAGGTGACCCACACCGCTACTTTGTGCAACCAAGATGGTTACGT
CGTTGTCCCGCACAACACGTCCCGGTATTTCACACAGCAGTATCCGTGTG
GTGTACGGAATTCCTGCAGAAGTTGCATCGTGTGCGCCTTGGCATCGCAC
CCCGAGGTCGGTTACGACGTACGACTGCCGGCTCATCTTCTCTTCATTCT
TTTACAGTGTTCCCCAACTCCCCTGCAATCTCGCCGCCTATAAGCAAATT
CTCGTCGCGTCTTCAAATTCGGGTAGGGCGCTCAAGCCCCTTGCGGAAGA
ACCGGCGGGCGAAGCTGCTCTTGCCGCCGGGGAAGGAGGCGCGAGATCGT
TTCGAAATCTCGCGGAGAGGGCATCGGAGTGGGTTGCAACGCCGTTGGAA
GGGGTGCGGGCGGTGACCTGGGAACTCCTCTTCGGCTTGCGGCATGACGT
GAGGTTTTTGCGAACGATGATGGGTGTTTTGATCGTCCTATTCCTTGTCC
ATCTATTAAGACGTGCGAAGCCGCTAGTATAGTTAAGGAGAGTCCGGCGA
ACTCTGCTCACCGAACGATGGCACTCTTTTGACTCCATGTGCAATGTCTG
ACAGCAGTGAGCACGCCCATCCCACAAACTCTGTCCACCCCCCACCACGC
GCCCCGAAACAGACGAAGACGGATGACTCGTTTACATTCGCTCGCGCCAT
CAAGCGCCTCCGTGAAGCCATTGAAGCCTTAGGCGACGTCACGGGTGGGG
GCATGGCTACCGATGGTACTGCCGGCGAAGGAGACGATGGTGAGGGAACC
GGATCGGCGCGAGGAAATGGGGTCTCGCTTTCCTTGGAGCGCAAATTGGC
GCTAATCTTGGTCATGAAAGAGGCGTTCAAGAGCTACCACCTGGCATGGG
CAAGATCGTCGATTGAACCAGCCTTCAAGGTGTGGATTGGTCACGGCAGG
GGTACGTCATGCGTTTTAATGGCATACAGGTTGCCGGTAGCTTGAGTTCC
GCGAAGTAGCGTCGTTTGTCCTGTTGAGCTGTGACGCTCTTGTGGTGCGT
GCTGATGTTGTTGCCTGCCCGACTTTCAGGCATTCTCGACACGTGAACGT
TGGCTTGTTTCATCCCATCCATCGCCTTCCTCCCGAGACGCAACCAGTTC
ATTTTTCTCTTTGATCCTGTGTCGCGGGCTTGTGCGCCGTGTTGCCCGTT
GCCTAGGCGGCGGCAGATCGCAGGCGACTATTCCCGGAAGGGGAGCTGCG
CGATACGCTCGACGGTTTCACCGACGCAATAACCAAAAGGCAAAGGAATC
CTGGAGGGTTGATGGCCCCACCTTCCAGATCGGTGAGTGTTCTGCGAGAG
TCAGGTGGGTTGGGGAGTTCTACGCTCTGCCTTTCCGCATCCTTGGTATG
CGAACGTCGGAATGATGCCGCCAGACGACTTTACACTCGTGAACATTTCG
TGTGGGAGAAGCGGTGCCCTCTCACGGTTCTGGCGAGAGCAGCGTCAGGC
CAACTTGCTTATAACCTCCCTCGCACCCCTCACCGTTGTATGAACAGGTC
AGAGCCCACAACAGCACGGCGCATCCGATGCTCAACAAGCGCTCGGACGT
CATCCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11119:1..2060+

>mRNA_Ecto-sp13_S_contig11119.977.1 ID=mRNA_Ecto-sp13_S_contig11119.977.1|Name=mRNA_Ecto-sp13_S_contig11119.977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11119:1..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACGCGGACAAGGTTCAAATTCGCGAAGCAGCGGCTGCGGATGCAGT
GGTGGCAGCGTCGAGAGCTAAGAGCCGAGGGCCAGAGGCTCGAGGTTCTG
GAGGAAGGCCGGCGACGGAGGGCCGTGAGAAGAAAAAGCAGACGGTGGAC
GTGGCAGCCTCGCTGCAGAAACTCAAGGCGTTCATTCTCAAGCCCAAGAA
AGCGGCGAAAGCGGCATCGCTCATGGCAGACCTGATGGAGGCGCATATGC
GTCCGGACAACGCCCGGATGTTTTTCAGGGCGCTCAAGCCCCTTGCGGAA
GAACCGGCGGGCGAAGCTGCTCTTGCCGCCGGGGAAGGAGGCGCGAGATC
GTTTCGAAATCTCGCGGAGAGGGCATCGGAGTGGGTTGCAACGCCGTTGG
AAGGGGTGCGGGCGGTGACCTGGGAACTCCTCTTCGGCTTGCGGCATGAC
ACGAAGACGGATGACTCGTTTACATTCGCTCGCGCCATCAAGCGCCTCCG
TGAAGCCATTGAAGCCTTAGGCGACGTCACGGGTGGGGGCATGGCTACCG
ATGGTACTGCCGGCGAAGGAGACGATGGTGAGGGAACCGGATCGGCGCGA
GGAAATGGGGTCTCGCTTTCCTTGGAGCGCAAATTGGCGCTAATCTTGGT
CATGAAAGAGGCGTTCAAGAGCTACCACCTGGCATGGGCAAGATCGTCGA
TTGAACCAGCCTTCAAGGCGGCGGCAGATCGCAGGCGACTATTCCCGGAA
GGGGAGCTGCGCGATACGCTCGACGGTTTCACCGACGCAATAACCAAAAG
GCAAAGGAATCCTGGAGGGTTGATGGCCCCACCTTCCAGATCGGTCAGAG
CCCACAACAGCACGGCGCATCCGATGCTCAACAAGCGCTCGGACGTCATC
CGTTGA
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