mRNA_Ecto-sp13_S_contig11118.976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11118.976.1
Unique NamemRNA_Ecto-sp13_S_contig11118.976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11118.976.1 vs. uniprot
Match: A0A6H5JMR2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMR2_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 2.460e-92
Identity = 151/158 (95.57%), Postives = 154/158 (97.47%), Query Frame = 1 
Query:    1 MQLCVGRSMAMLAMALRNVSGFVGPVRFTAARSAGGVLRMSSGPTSASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAESTPRQDSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDESGEESREDDGNEYYI 474
            MQLCVGRSMAMLA+ALRN SGFVGPVRFTAARSAG VLRMSSGPTSASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAEST RQDSVS+PGMG FGKRERDDFIEGEGETSALRRYQYSDQLLTDD+SGEESREDDGNEYYI
Sbjct:    1 MQLCVGRSMAMLAIALRNASGFVGPVRFTAARSAGVVLRMSSGPTSASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAESTSRQDSVSMPGMGVFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11118.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMR2_9PHAE2.460e-9295.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11118contigEcto-sp13_S_contig11118:2..4039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1317
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001730.1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.2441113-UTR-Ecto-sp13_S_contig11118:1..8411681462577.2441113-UTR-Ecto-sp13_S_contig11118:1..841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11118 2..841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.2631302-CDS-Ecto-sp13_S_contig11118:841..10511681462577.2631302-CDS-Ecto-sp13_S_contig11118:841..1051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11118 842..1051 -
1681462577.2715533-CDS-Ecto-sp13_S_contig11118:3493..36571681462577.2715533-CDS-Ecto-sp13_S_contig11118:3493..3657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11118 3494..3657 -
1681462577.2798657-CDS-Ecto-sp13_S_contig11118:3936..40391681462577.2798657-CDS-Ecto-sp13_S_contig11118:3936..4039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11118 3937..4039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11118.976.1prot_Ecto-sp13_S_contig11118.976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11118 842..4039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11118.976.1

>prot_Ecto-sp13_S_contig11118.976.1 ID=prot_Ecto-sp13_S_contig11118.976.1|Name=mRNA_Ecto-sp13_S_contig11118.976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MQLCVGRSMAMLAMALRNVSGFVGPVRFTAARSAGGVLRMSSGPTSASRP
SVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAESTPRQ
DSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDESGEESRE
DDGNEYYI*
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mRNA from alignment at Ecto-sp13_S_contig11118:2..4039-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11118.976.1 ID=mRNA_Ecto-sp13_S_contig11118.976.1|Name=mRNA_Ecto-sp13_S_contig11118.976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11118:2..4039- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACTGTGTGTAGGGCGGTCTATGGCGATGCTGGCGATGGCGCTGAG
AAACGTCAGCGGCTTCGTGGGACCTGTTCGATTCACCGCTGCGAGGTCGG
CAGGTGAGCCCTAGATGTTTTTTGTTCGTACAGGGGTGTGGTGTCTTCCG
TTCAGCCGCGATCGTTTATCAAGTTGAGGTTGAGGTCTGTTGGCGGCGCG
GGAAGCTTCTGCGGTGATTCCCCGGCCCTCTTTGTCGCGCTGCGCAAATC
GTACCCCGGCTCATCACGATGCTAGTGTTCTCCTCTTCCACCCTGCTTCA
AAAGTATCTCGACCTCCCCACGGAGGTTTGGATATCTTCAATTCCACGTC
CGTGGTTGTGTTGCTGACCTTTCGTGTGCCAGGTGGCGTCTTGAGGATGA
GCTCCGGGCCAACGTCTGCCTCGCGCCCTAGCGTGCCGGTCCTCGATGCG
CAGGCAGCGGAGCTCAAGGCCGAGCGGCTATGGGGTATGGCGGACGCCCA
GAAGCCGGGGTTGTCGGTACCATCTGAGAGATTAGACCTTGGGGAGGTGA
GGTGCTGCTGTTCTGATTCGGCCGGTGTTTCGCGTTATTTGATGCGGCGA
CGCATCGAAATCCAGTTGCACACACACGTGGTGCTCGGCGATCGGTACAG
TGGGAATTAGAAACACTCCCCCGGTCTTTTTGGAATGGTGTTGAATTTTG
CCACTCGCCAATCAACGAAGATGGATGATGAAGAGTTTGGTGTCGTGCCC
ACTTCCTTTCTAGATCGTCAGCAACATCTGCTGTACATTTACGATCGTTC
GGCACCTTTGACTAGAGAACAATGTAGTAAACGAAGTACATTGAAGCCAA
AACGTGGGCAGTTGCAACTTTCACAGCAGTACAGGCGGCTTTTTCACTCT
CTGCAACAGCCCTTTTCCTTGATTTCAGCGTAGTCTTCTCCAACGCATGG
TTGGCGTCGGATCGAACATTGATAGCGTCAAGCAGGGATTATTGTGGAAA
CAAAGGCCGCCTTCCGTCTTCCGTCTTGGTACGAGTTCGGATAAGTACTC
AAGTTACAGTCGCCGGGCGGTTGGTTTTCCACACGATGTGCGACAAAGTT
CCCTCTCTGGACTCAGTTCAAAGGGGTTGTGGCATTGGCACCATCGTTAA
AACCTCAACTGCCCGCAGTCACGACTCTCCTTTTCTATGTCTCGTGCGTT
CTGGCATCGATACACAACCGTAATTTGAAGTTGTGGGTTGTTTTTGGTGT
TTGGTTTTGTCTCTTTACATGCTCACCTCTTGATATCCATACCGGCGACC
TCAGTTTGACCGAGTGCGGCAGATAATGCTTGTACTTGGCGCTTCCTCAC
CACACATCGGTCGGGAGAAACCGGCCTTGCCTCCAGTGGTAGACCAATCT
TATACCATCTTGCGATGCTTGGCACCACCATGTTGGCGTTGCTGTCGGAC
TCTTCCCTCTCCGCTGGGCTCCGGTTATGTGGGTCGTATCGTTCCTCGAG
GTGGTGCCCTTCACCTTGGCCTTGGTGAGGCTGTTTCGACAGAAAATCTC
TTGTTCGAGCTTCTTTACAAGAGGCCTCTCACGTTCCGTGACTCAAGTGG
GAGTAGCCTACCAGTTGGAGGCACGGTCAGTTTCTTTTGTCGGCGCGTGG
CGAGGAAGTGCCACATATTACCGAGCGGATTCAGTCAATGATAAAGGTGG
AAAAAAAGAAAAGGAACTCATCGCTCCCGCTCGGTACTCGGCGCCAAACA
GAATACGAAGCACAAGATCAAGAACAATCACCCATGTTTCTATTTCTATA
CCCCTGACTCTCGATAGGACGGGGTGCAGTCACCGCCGGAGTTGCACCAG
CCATGCCATTCCCAGGCGAAATATCGTTGTAACAATGTACCCGAGGCTCA
AGATCAAGACGCCGGTGAAACCTGTATCCTCGATTCCATCAGAAGCAGAC
AAACTCGACGCATGGCGTCCCCCACCCCCGTACCATGCCTGGAATATATC
CTATGCCAGATTCTCGCCGGACAGCCTAGCCCCTGCCGTACGGAGACAAG
CAAAGGGTTTTCGCGTTCCTTATCAAGTACCCGTGCATGTATCTCGGAAA
AATCGTAATTGGACAGCACGTATGAACACGACATGGGTGTTTGGGTGCGG
TAGCTTCGTCAGAGGCCGAAAGGGAAATAGGGTTGACTCAAGACCTTGAT
TGATACGAGAATGACAGCAATGTGGGGAAGGCAAGAGGGGGCCCGCGCAT
GATGTCCACCATACAAACATCATTCACGTAACCCCCGAAGGTCGCGTAGA
TCAGTACTGTGTTGAGGACCCCAAACATCTGGGAAGGGTGCAATGGAAGG
TTATCAAGGTAGTCTAGTAGGCAAAGTTGTTTACGTTATCATCCAAATTA
CGTCGCACGTTGCGAGAGCTGTTCTACACCTAAAATTGGCTTAGCTTGTA
CACGGACTTTGTGTTTCGCCTCGTTTTTTTCACCTGTAATGAGGGAAATT
GGTTGCCCCTTTGAACAGTGGGGATGAGGAATTTGCTGCTGTCGACCCGT
TTTCCTTGACTGCTGTTTCGCTGTCAGACCGGTTTGTGTTCAATCGTGTA
TTGGTCGTCGGCCTCAAGAAAGAGCGGGAGAGTGGGCAGCGCGGCCCACA
AGTAGCGCCATGACACAAGGCTCAGCTAATACATACCCCGCACCAAACTA
GAATTATCCCAATCGACATAAAAGTTTGTCTTTGTTGGAGATATAGGTAT
TACCGACAAGAGGATCGTGGCTAGAAGTAGACATGATAATGGTTTTTGAA
GTGCACACAACATCAGCAACAGCGTGCTGACAACATTGACAACGAGACAC
AACACCTTGTTCATATCCATGTTCAATTGCCAACCGGATGTAGGCTCTTC
CCACATGACCTTGCTCGGTACACAGCGTTTTGACGTCGTAACGGAAGTCC
TCTAAAGTCTTGACCGCCCCTGAAATTGAACGCAACAGGTCCAAGCGGCT
GCTGAGAGCACGCCGCGGCAAGATTCTGTGAGCATCCCCGGCATGGGTGC
TTTCGGCAAGAGGGAAAGGGACGACTTCATCGAAGGAGAGGGGGAAACAT
CCGCATTGCGGCGGTATCAGTACAGCGATCAGCTTTTGACGGACGACGAG
AGCGGAGAAGAGAGCAGGGAAGACGACGGCAACGAGTACTACATTTGACC
GGCCTCGAATCCGGACAAAGTTAGACTGTAACGTACGTGCACCTCACGCC
ACTGGGATAGTGGTACGTAAGCTTGGAAAATTCTGCGAGATACAATCAAT
CCGCCGCGAACCGCTTACGGCGAAATCTGTCAGCCGGTTTTGCTTAGTTG
TGATTCAAACACCGTTTTATTTTTTATCCTGATGGCTTATGTAGCCGCAC
CTCCGCCTCGCCTCTGTGGAGGTGTTTCCAATGTGGCTGACTTGTGCTAG
TAATCTACTGAGAGTGTGTAACTGGGAACCCTGAGGCCATGAAGTGGAAG
CTTGAGCTTTAGCTTTGGGCCTGATGGGTTGCGGCCGATCTGCGTGCATC
ATGTTCGTTTGCGAGTTTCGGGAAATGTTTCAACTTGACGAAGAAGGCCT
CGATAGGAGAGAGCCGTTGTATAGGCAATTCATGAACTTTGCAAGGTGTT
TGAGGCGGTGCTAGCGTCCCGCCGGGAGGACGGGGAAATCTGGTCTATTC
TCAGGGAGACAATCAAATCAAGAACGTTGGTTGTGTAGTGGTTCTTCTTC
CAGTTTTTCCTGTGCTACCATGCACTTGCCTGTCTTGCCTCTCTGCGGAA
TGTATGTGCTACACATACTCGCTTTGGTGGCGTTTGGTCTGCTGCTTGTT
TCAAGTCATGACCCCAAGTGGGACAGTCCGTGCAGCGCTTTGCGGTTCAA
GGCCTACTAAATAGCACGCATACGAGCAGGCAAGTGATTTCAGCCGAAAC
GCGAACTTTCGGGTGAAGATTCATGCCCGGCGGCATACTTCTGCTTGTTC
TTTTGGTACCCGGCACACCGTTCGAGTAGGGGAGATGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11118:2..4039-

>mRNA_Ecto-sp13_S_contig11118.976.1 ID=mRNA_Ecto-sp13_S_contig11118.976.1|Name=mRNA_Ecto-sp13_S_contig11118.976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11118:2..4039- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACTGTGTGTAGGGCGGTCTATGGCGATGCTGGCGATGGCGCTGAG
AAACGTCAGCGGCTTCGTGGGACCTGTTCGATTCACCGCTGCGAGGTCGG
CAGGTGGCGTCTTGAGGATGAGCTCCGGGCCAACGTCTGCCTCGCGCCCT
AGCGTGCCGGTCCTCGATGCGCAGGCAGCGGAGCTCAAGGCCGAGCGGCT
ATGGGGTATGGCGGACGCCCAGAAGCCGGGGTTGTCGGTACCATCTGAGA
GATTAGACCTTGGGGAGGTCCAAGCGGCTGCTGAGAGCACGCCGCGGCAA
GATTCTGTGAGCATCCCCGGCATGGGTGCTTTCGGCAAGAGGGAAAGGGA
CGACTTCATCGAAGGAGAGGGGGAAACATCCGCATTGCGGCGGTATCAGT
ACAGCGATCAGCTTTTGACGGACGACGAGAGCGGAGAAGAGAGCAGGGAA
GACGACGGCAACGAGTACTACATTTGA
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