mRNA_Ecto-sp13_S_contig11097.956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11097.956.1
Unique NamemRNA_Ecto-sp13_S_contig11097.956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11097.956.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 2.140e-77
Identity = 147/166 (88.55%), Postives = 152/166 (91.57%), Query Frame = 1 
Query:    1 MQYWKPGEKRPGGREGGXXXXXXXXXXXXGHVSDEQGRTDSKKEKRVVDKSRSDEGGKGGTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVVGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLETDFSSSYSKRLKADKDTGKDRRVLI 498
            MQYWKPGEKRPGG EGGXXXXXXXXXXX   VSD QGRTDSKK    VDKSR DEGG+G TDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPV GPSQGLLAMKFMQRK QADEAQKQRQEKREKLE+DFSSSY+KRLKADKDTGKDRR ++
Sbjct:    1 MQYWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDGQGRTDSKKR---VDKSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVL 163
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BLAST of mRNA_Ecto-sp13_S_contig11097.956.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.450e-76
Identity = 143/164 (87.20%), Postives = 150/164 (91.46%), Query Frame = 1 
Query:    1 MQYWKPGEKRPGGREGGXXXXXXXXXXXXGHVSDEQGRTDSKKEKRVVDKSRSDEGGKGGTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVVGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLETDFSSSYSKRLKADKDTGKDRRV 492
            MQYWKPGEKRPGG EG XXXXXXXXXX  G VSDEQGRTDSKK+K+ VDKSR D GG+G TDKGNRRSSEG KKRV+KGKGKERHSTG GLGGIKGEVSRAASKPPV GPSQGLLAMKFMQRKVQADEAQKQRQEKREKLE+ FSSSY+KRLKADKDTGKDR +
Sbjct:    1 MQYWKPGEKRPGGGEGXXXXXXXXXXXGTGRVSDEQGRTDSKKKKKRVDKSRRDGGGRGSTDKGNRRSSEGVKKRVKKGKGKERHSTGGGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTGKDRLI 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11097.956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLI5_9PHAE2.140e-7788.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK6_ECTSI1.450e-7687.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11097contigEcto-sp13_S_contig11097:66..1748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462575.9172273-CDS-Ecto-sp13_S_contig11097:65..2181681462575.9172273-CDS-Ecto-sp13_S_contig11097:65..218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11097 66..218 -
1681462575.9279225-CDS-Ecto-sp13_S_contig11097:1394..17481681462575.9279225-CDS-Ecto-sp13_S_contig11097:1394..1748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11097 1395..1748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11097.956.1prot_Ecto-sp13_S_contig11097.956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11097 66..1748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11097.956.1

>prot_Ecto-sp13_S_contig11097.956.1 ID=prot_Ecto-sp13_S_contig11097.956.1|Name=mRNA_Ecto-sp13_S_contig11097.956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MQYWKPGEKRPGGREGGGGSAGDGGGSGSGHVSDEQGRTDSKKEKRVVDK
SRSDEGGKGGTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSR
AASKPPVVGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLETDFSSSYSK
RLKADKDTGKDRRVLIST*
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mRNA from alignment at Ecto-sp13_S_contig11097:66..1748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11097.956.1 ID=mRNA_Ecto-sp13_S_contig11097.956.1|Name=mRNA_Ecto-sp13_S_contig11097.956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11097:66..1748- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTACTGGAAGCCCGGAGAGAAGAGGCCGGGAGGCCGAGAGGGGGG
CGGCGGGTCAGCAGGCGACGGCGGAGGGAGTGGGTCAGGGCACGTGAGCG
ACGAGCAAGGACGGACAGATAGCAAGAAGGAGAAGCGGGTGGTGGACAAG
AGTAGGAGTGATGAAGGTGGCAAGGGGGGCACCGACAAAGGCAACAGAAG
AAGCAGTGAAGGAGCGAAGAAGAGAGTGAGGAAGGGGAAAGGCAAGGAGA
GGCACAGCACCGGCAGCGGGTTGGGAGGCATCAAGGGGGAAGTGTCGCGG
GCTGCCTCTAAGCCGCCAGTTGTTGGGCCGTCACAGGGCCTTTTAGCGAT
GAAGGTAAGCACGCGCGGCTGCAACGTCTGCCTGGTCGCACTCATCCCTG
TGCTACAGAGTGTCGAGAAGAAGGGAACATACGAAACTGCTGTGGTGTAC
CAATCTCTCTGACTGCTATCCAGCAGCACTTGAGATGGATCCTGCCGACC
CAACATGTTGGCGGCCGTTGCGTGGTTACAGGTCTCCCTGTACGGTGGTG
TGTATATCGGGTGCGTTGGAGCCAGCTCAAGTGTGCGTACCCCAGTAGAA
ACTGTTGAGAGGCATGACGGCCACTAGACCACGAGTCAGCGCTGACTCGT
GGTCTAGTGGTCGTCGTGCTTCTTAACAAAAGTTAGTGCCCGCAACGGGT
CTGGCTTTGCAGCCACGAACACGTCCCCCCAGGGTTGCCATCCCCGTGAT
CAGCGCTGTCTTTCCCGGAAATCGCTACCGGTACAAGAGCTTCATCGGCT
TATTTTGCGAAGCCTATTTCCTCACACTTTTTTTTCCCATCGGACTCAAA
AAAAGTTATACTCGAGGGGAGATTCGAACCCCAGATATAACATAACTTTT
GTTGACAAGCACTATTATAGACCACGTAGTCAGCCAATAGAAACTGATAC
ATCTAGCACGTTCAGCAAACAACGTGTACATTATCGTAAGCACGAAAAAT
GTCACTGCTGGTTACCTACCGACGGAGTGTTTCCACTCGGGCTAGCGCCT
TTCTAAGCAGCATGTACGAGCGAATGTTGTTGCTGATACATACATACTGG
TGTATGCATGCTCTGTCCGGAGCAATAAGCGTGGATCGAAGTTGTAGAAC
CCCGATCTCCTGTCGTGCTGCCTTTCCGTCAAAACCTCGGCAATTAGTTG
TAGAGAACATATGTACCATCGAAAAAAGACTACCCATTCTAGATAGTATG
CACACCGCATCATCAGTAGTGAAAGGTCAGAGGGAATATGTTAGTCTTCA
CAGATAGCCGTGAGTAGGAAGAATACCGACTCTGGAATTGGGCTTATTGA
GTCTATTTTAGACTTCAAAACCAATTTTTTTTAGAGGGATGACAGCAGGT
GCTCGTCACAAAAGCACTTCATAGGTACGAATATTACAAGTTATCTCCCC
AGGTGGTTTTCTGTAGTTGTAAGTTTATGGGTGCCCTTGCCTCCCTTGCT
GCAACGCCGGGTGGTGTCTGGTGCCTGCAGTTCATGCAGCGCAAGGTACA
GGCGGACGAGGCTCAGAAGCAGCGGCAGGAAAAGAGAGAGAAGCTGGAAA
CCGACTTCAGCTCCTCCTACTCGAAACGGCTCAAGGCGGACAAGGACACC
GGGAAAGACCGGCGAGTGCTTATTTCCACCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11097:66..1748-

>mRNA_Ecto-sp13_S_contig11097.956.1 ID=mRNA_Ecto-sp13_S_contig11097.956.1|Name=mRNA_Ecto-sp13_S_contig11097.956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11097:66..1748- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTACTGGAAGCCCGGAGAGAAGAGGCCGGGAGGCCGAGAGGGGGG
CGGCGGGTCAGCAGGCGACGGCGGAGGGAGTGGGTCAGGGCACGTGAGCG
ACGAGCAAGGACGGACAGATAGCAAGAAGGAGAAGCGGGTGGTGGACAAG
AGTAGGAGTGATGAAGGTGGCAAGGGGGGCACCGACAAAGGCAACAGAAG
AAGCAGTGAAGGAGCGAAGAAGAGAGTGAGGAAGGGGAAAGGCAAGGAGA
GGCACAGCACCGGCAGCGGGTTGGGAGGCATCAAGGGGGAAGTGTCGCGG
GCTGCCTCTAAGCCGCCAGTTGTTGGGCCGTCACAGGGCCTTTTAGCGAT
GAAGTTCATGCAGCGCAAGGTACAGGCGGACGAGGCTCAGAAGCAGCGGC
AGGAAAAGAGAGAGAAGCTGGAAACCGACTTCAGCTCCTCCTACTCGAAA
CGGCTCAAGGCGGACAAGGACACCGGGAAAGACCGGCGAGTGCTTATTTC
CACCTAG
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