mRNA_Ecto-sp13_S_contig11091.952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11091.952.1 vs. uniprot
Match: A0A6H5KB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB88_9PHAE) HSP 1 Score: 976 bits (2524), Expect = 0.000e+0 Identity = 557/670 (83.13%), Postives = 582/670 (86.87%), Query Frame = 1
Query: 7 WQGPPDLPGSTATASGTIPATTVAARGRSDITGTGRTAAIESSVASKRTAQSMVEAAAPAAAASTPRVPDDFGTKRRDGSSVRLRPGLVATTDPSAITTDPASAVPAPVFPSLHKASLVAGPGGLRCLTVGLAVLQKVCPPVYRRLARVVSERYLEWVTEARRKNEDDWQESLESESVHSLSRAFYDSFAKGNCSGSVAGKGGNDVESSVGWTSGVEGGRGSSSVVGFGDRASSNRDELSIEAATLAMGSSKSISASSKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVLVPAQRKTPSSSTSPYRSXXXXXXXXXXXXXXXCNNTNTSDDR-IARRRVSPRSNATFTVISRATRRHCFAPPAPXXXXXXXXXSHAPSTGTNTDGRQAADQTKVKSPPRTNTGPISTGSASVYHTHHQSPRGAGGSLDKTGKANVHSCGGSVTGRDGSVFAGSNGGRXXXXXXXXXGSVCSRGHRCGSSLAQGVTVPSERLGTGWAAANVSNLSAKNHQLETYDCPVSPFSDPPSWADIPPLAVMEPPGYSLSLNTPTCAAADIVAAMPSGQRPPEVSGASPANETAASSPSSPLHVEDGTPTAAAAVATRPAEKAVFQIVTSRRRPSYGWGWKRPPGQKGGARKRVLVSGSMAVPSPSLHGWGRPGRTNMSTVPPTS 2013
WQGPPDLPGSTATA GT PATT AA GRSDITGTG TAA+ESSVAS TAQ+M AAAPAAAASTPRVPD GTK RDGSSVRLRPGLV+ TDPSAITTDPASAVPAPVFPSLHKASLVAGPGGLRCLTV LAVLQKVCPPVY RLARVVSERY EW+TEARRKNE+DWQESLESESVHSLSR+FYDSFAK +CSGSVAGKG NDVESSVGWTS EGGRGS+SV+G GDRA S+ DE +IEAATL M SS SISAS KSNKSIFELSRRYVGLALCSSARNVVPVRLGRVLVPAQR TPSSSTSP+RS XXXXXXXXXXXX A RRVSPRS ATF+VISRA RRHCFAPPAP SHAPSTGT TDG+QAADQTK SPPRTNTGPISTGSA VYH HHQSPRG GGSLD TGKA+VHSCGG VTG G+VFAGS+G XXXXXXXXX SVCSRGHRCGS+LA+GVTVPSERLGT WAAANVSNL K HQ+E YDCPVSPFSDPPSW DIPPLAVMEPPG+S +TPTCAAA IVAAMPSG+ PEVSGASPANETAAS PSSPLHVED TPT AAAVATRPAEK VFQIVTSRRRPSYGWGWKRPPGQKGGARKRV++ GS AVPSPSLHGW RPGRTNMSTVPPTS
Sbjct: 611 WQGPPDLPGSTATAGGTTPATTAAAHGRSDITGTGITAALESSVASNTTAQAMAVAAAPAAAASTPRVPDGSGTKHRDGSSVRLRPGLVSITDPSAITTDPASAVPAPVFPSLHKASLVAGPGGLRCLTVRLAVLQKVCPPVYHRLARVVSERYSEWMTEARRKNEEDWQESLESESVHSLSRSFYDSFAKVDCSGSVAGKGANDVESSVGWTSSAEGGRGSNSVLGSGDRAGSDGDEGTIEAATLGMASSNSISASGKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVLVPAQRNTPSSSTSPHRSRQRXXXXXXXXXXXXXXXXXXXXXXGTAHRRVSPRSKATFSVISRAARRHCFAPPAPASAAGAGVGSHAPSTGTITDGQQAADQTKTMSPPRTNTGPISTGSAPVYHKHHQSPRGTGGSLDNTGKASVHSCGGLVTGSGGTVFAGSSGXXXXXXXXXXXXSVCSRGHRCGSNLARGVTVPSERLGTEWAAANVSNLLVKYHQVEIYDCPVSPFSDPPSWVDIPPLAVMEPPGHSPRSSTPTCAAASIVAAMPSGEHAPEVSGASPANETAASPPSSPLHVEDRTPTVAAAVATRPAEKTVFQIVTSRRRPSYGWGWKRPPGQKGGARKRVVIPGSTAVPSPSLHGWERPGRTNMSTVPPTS 1280
BLAST of mRNA_Ecto-sp13_S_contig11091.952.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI) HSP 1 Score: 920 bits (2379), Expect = 8.550e-316 Identity = 551/670 (82.24%), Postives = 564/670 (84.18%), Query Frame = 1
Query: 4 SWQGPPDLPGSTATASGTIPATTVAARGRSDITGTGRTAAIESSVASKRTAQSMVEAAAPAAAASTPRVPDDFGTKRRDGSSVRLRPGLVATTDPSAITTDPASAVPAPVFPSLHKASLVAGPGGLRCLTVGLAVLQKVCPPVYRRLARVVSERYLEWVTEARRKNEDDWQESLESESVHSLSRAFYDSFAKGNCSGSVAGKGGNDVESSVGWTSGVEGGRGSSSVVGFGDRASSNRDELSIEAATLAMGSSKSISASSKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVLVPAQRKTPSSSTSPYRSXXXXXXXXXXXXXXXCNNTNTSDDRIARRRVSPRSNATFTVISRATRRHCFAPPAPXXXXXXXXXSHAPSTGTNTDGRQAADQTKVKSPPRTNTGPISTGSASVYHTHHQSPRGAGGSLDKTGKANVHSCGGSVTGRDGSVFAGSNGGRXXXXXXXXXGSVCSRGHRCGSSLAQGVTVPSERLGTGWAAANVSNLSAKNHQLETYDCPVSPFSDPPSWADIPPLAVMEPPGYSLSLNTPTCAAADIVAAMPSGQRPPEVSGASPANETAASSPSSPLHVEDGTPTAAAAVATRPAEKAVFQIVTSRRRPSYGWGWKRPPGQKGGARKRVLVSGSMAVPSPSLHGWGRPGRTNMSTVPPTS 2013
SWQGPPDLPGSTATA GT PATT AA GRSDITGTG TAAIE SVAS T Q+MV A+APAAAASTPRVPD GTK RDGSSVRLRPGLVATTDPSAIT DPASAVPAPVFP LHKASLVAGPGGLRCLTVGLAVLQKVCPPVYRRLARVVSERYLEWVTEARRKNE+DWQESLESESVHSLSR+FYDSFAKGNCSGS+AGKG N VESSVGW S EGGRGSSSV+GFGDRA S+ DEL+IEAATL M SS SIS S KSNKSIFELSRRYVGLALCSSARNVVPVRLGRV+VPAQRKTPSSSTSP+RS XXXXXXXXXXXXXX RVSPRS ATFTVISRA RRHCFAP A XXXXXXXX SHAPSTGT TDGRQAADQTK KSPPRTN VHSCGGSVTG DGSVFAGSNG R XXXXXXXX SVCSRGHRCGSSLA+GVTVPSERLGT WAAANVSNL AK HQLETYDCPVSPFSDPPSWADIPPLAV+EPPGYS S NTPTCAAA I AAM G+RPPEVSGASPANETAAS PSSPLHVEDG PT AAAVATRPAEK VFQIVTSRRRPSYGWGWKRPPGQKGGARKRVLV GS VPSPSL G RPGRTNMS VPPTS
Sbjct: 1111 SWQGPPDLPGSTATAGGTTPATTAAAHGRSDITGTGSTAAIEPSVASNTTVQAMVVASAPAAAASTPRVPDGSGTKHRDGSSVRLRPGLVATTDPSAITRDPASAVPAPVFPGLHKASLVAGPGGLRCLTVGLAVLQKVCPPVYRRLARVVSERYLEWVTEARRKNEEDWQESLESESVHSLSRSFYDSFAKGNCSGSIAGKGPNGVESSVGWISSAEGGRGSSSVLGFGDRAGSDGDELTIEAATLGMASSNSISGSGKSNKSIFELSRRYVGLALCSSARNVVPVRLGRVVVPAQRKTPSSSTSPHRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVSPRSKATFTVISRAARRHCFAP-AXXXXXXXXXGSHAPSTGTITDGRQAADQTKTKSPPRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVHSCGGSVTGGDGSVFAGSNGRRGXXXXXXXXXSVCSRGHRCGSSLARGVTVPSERLGTEWAAANVSNLLAKYHQLETYDCPVSPFSDPPSWADIPPLAVIEPPGYSPSSNTPTCAAAGIGAAMLPGERPPEVSGASPANETAASLPSSPLHVEDGAPTEAAAVATRPAEKTVFQIVTSRRRPSYGWGWKRPPGQKGGARKRVLVPGSTTVPSPSLLGRERPGRTNMSAVPPTS 1779 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11091.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11091.952.1 >prot_Ecto-sp13_S_contig11091.952.1 ID=prot_Ecto-sp13_S_contig11091.952.1|Name=mRNA_Ecto-sp13_S_contig11091.952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=672bp QSWQGPPDLPGSTATASGTIPATTVAARGRSDITGTGRTAAIESSVASKRback to top mRNA from alignment at Ecto-sp13_S_contig11091:2422..5455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11091.952.1 ID=mRNA_Ecto-sp13_S_contig11091.952.1|Name=mRNA_Ecto-sp13_S_contig11091.952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11091:2422..5455- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11091:2422..5455- >mRNA_Ecto-sp13_S_contig11091.952.1 ID=mRNA_Ecto-sp13_S_contig11091.952.1|Name=mRNA_Ecto-sp13_S_contig11091.952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11091:2422..5455- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |